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Search of human proteins with 4757738
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4757738 A-kinase anchor protein 7 isoform alpha [Homo
sapiens]
(81 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4757738 A-kinase anchor protein 7 isoform alpha [Homo sapiens] 167 2e-42
gi|20336196 A-kinase anchor protein 7 isoform beta [Homo sapiens] 154 2e-38
gi|7706527 A-kinase anchor protein 7 isoform gamma [Homo sapiens] 131 1e-31
gi|223633927 hypothetical protein LOC642597 [Homo sapiens] 43 6e-05
gi|68077166 DnaJ homology subfamily A member 5 isoform 2 [Homo s... 31 0.24
gi|52856434 POTE ankyrin domain family, member G [Homo sapiens] 28 1.2
gi|224282147 prostate-specific P704P [Homo sapiens] 28 1.2
gi|209977003 ANKRD26-like family C, member 3 [Homo sapiens] 28 1.2
gi|153791352 prostate, ovary, testis expressed protein on chromo... 28 1.2
gi|134133226 protein expressed in prostate, ovary, testis, and p... 28 1.6
gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 ... 28 1.6
gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2 ... 28 1.6
gi|46399200 testis-specific bromodomain protein [Homo sapiens] 28 1.6
gi|46399198 testis-specific bromodomain protein [Homo sapiens] 28 1.6
gi|113413200 PREDICTED: similar to protein expressed in prostate... 28 2.1
gi|239741769 PREDICTED: similar to protein expressed in prostate... 28 2.1
gi|88953571 PREDICTED: similar to protein expressed in prostate,... 28 2.1
gi|122937514 unc-13 homolog C [Homo sapiens] 28 2.1
gi|39725938 polymerase (RNA) III (DNA directed) polypeptide A, 1... 27 2.7
gi|33300663 polycomb group ring finger 5 [Homo sapiens] 27 3.5
gi|5802978 apolipoprotein B mRNA editing enzyme, catalytic polyp... 27 4.6
gi|112380630 leiomodin 1 (smooth muscle) [Homo sapiens] 27 4.6
gi|89363026 calponin-homology and microtubule-associated protein... 27 4.6
gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens] 26 6.0
gi|194097392 Golgi autoantigen, golgin subfamily a, 2 [Homo sapi... 26 7.8
gi|38788260 bromodomain PHD finger transcription factor isoform ... 26 7.8
gi|38788274 bromodomain PHD finger transcription factor isoform ... 26 7.8
gi|68077168 DnaJ homology subfamily A member 5 isoform 1 [Homo s... 26 7.8
>gi|4757738 A-kinase anchor protein 7 isoform alpha [Homo sapiens]
Length = 81
Score = 167 bits (422), Expect = 2e-42
Identities = 81/81 (100%), Positives = 81/81 (100%)
Query: 1 MGQLCCFPFSRDEGKISEKNGGEPDDAELVRLSKRLVENAVLKAVQQYLEETQNKNKPGE 60
MGQLCCFPFSRDEGKISEKNGGEPDDAELVRLSKRLVENAVLKAVQQYLEETQNKNKPGE
Sbjct: 1 MGQLCCFPFSRDEGKISEKNGGEPDDAELVRLSKRLVENAVLKAVQQYLEETQNKNKPGE 60
Query: 61 GSSVKTEAADQNGNDNENNRK 81
GSSVKTEAADQNGNDNENNRK
Sbjct: 61 GSSVKTEAADQNGNDNENNRK 81
>gi|20336196 A-kinase anchor protein 7 isoform beta [Homo sapiens]
Length = 104
Score = 154 bits (388), Expect = 2e-38
Identities = 81/104 (77%), Positives = 81/104 (77%), Gaps = 23/104 (22%)
Query: 1 MGQLCCFPFSRDEGKISE-----------------------KNGGEPDDAELVRLSKRLV 37
MGQLCCFPFSRDEGKISE KNGGEPDDAELVRLSKRLV
Sbjct: 1 MGQLCCFPFSRDEGKISELESSSSAVLQRYSKDIPSWSSGEKNGGEPDDAELVRLSKRLV 60
Query: 38 ENAVLKAVQQYLEETQNKNKPGEGSSVKTEAADQNGNDNENNRK 81
ENAVLKAVQQYLEETQNKNKPGEGSSVKTEAADQNGNDNENNRK
Sbjct: 61 ENAVLKAVQQYLEETQNKNKPGEGSSVKTEAADQNGNDNENNRK 104
>gi|7706527 A-kinase anchor protein 7 isoform gamma [Homo sapiens]
Length = 326
Score = 131 bits (330), Expect = 1e-31
Identities = 65/66 (98%), Positives = 65/66 (98%)
Query: 16 ISEKNGGEPDDAELVRLSKRLVENAVLKAVQQYLEETQNKNKPGEGSSVKTEAADQNGND 75
I EKNGGEPDDAELVRLSKRLVENAVLKAVQQYLEETQNKNKPGEGSSVKTEAADQNGND
Sbjct: 261 IGEKNGGEPDDAELVRLSKRLVENAVLKAVQQYLEETQNKNKPGEGSSVKTEAADQNGND 320
Query: 76 NENNRK 81
NENNRK
Sbjct: 321 NENNRK 326
>gi|223633927 hypothetical protein LOC642597 [Homo sapiens]
Length = 69
Score = 42.7 bits (99), Expect = 6e-05
Identities = 18/40 (45%), Positives = 30/40 (75%)
Query: 18 EKNGGEPDDAELVRLSKRLVENAVLKAVQQYLEETQNKNK 57
EK G EP++ +L SK++V+NA+L+AVQQ +E+Q + +
Sbjct: 7 EKPGNEPEEVKLQNASKQIVQNAILQAVQQVSQESQRREE 46
>gi|68077166 DnaJ homology subfamily A member 5 isoform 2 [Homo
sapiens]
Length = 531
Score = 30.8 bits (68), Expect = 0.24
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 9 FSR---DEGKISEKNGGEPDDAELVRLSKRLVENAVLKAVQQYLEETQNKNKPGEGSSVK 65
FSR DE + + + E +DA +LSK+ + K Q Y ++ N N PGEG VK
Sbjct: 356 FSRPQIDENPLDDNSEEEMEDAPKQKLSKKQKKKKQ-KPAQNY-DDNFNVNGPGEG--VK 411
Query: 66 TEAADQNGNDN 76
+ D N N +
Sbjct: 412 VDPEDTNLNQD 422
>gi|52856434 POTE ankyrin domain family, member G [Homo sapiens]
Length = 508
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 1 MGQLC--CFPFSRDEGKISEKNGGEPDDAELVRLSKRL 36
MG+ C CFP+ R GK + G+ DD+ + L ++
Sbjct: 24 MGKWCRHCFPWCRGSGKSNVGTSGDHDDSAMKTLRSKM 61
Score = 26.2 bits (56), Expect = 6.0
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 1 MGQLC--CFPFSRDEGKISEKNGGEPDDAELVRLSKRL 36
MG+ C CFP+ R K + G+ DD+ + L ++
Sbjct: 61 MGKWCRHCFPWCRGSSKSNVGTSGDHDDSAMKTLRSKM 98
>gi|224282147 prostate-specific P704P [Homo sapiens]
Length = 508
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 1 MGQLC--CFPFSRDEGKISEKNGGEPDDAELVRLSKRL 36
MG+ C CFP+ R GK + G+ DD+ + L ++
Sbjct: 24 MGKWCRHCFPWCRGSGKSNVGTSGDHDDSAMKTLRSKM 61
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 1 MGQLC--CFPFSRDEGKISEKNGGEPDDAELVRLSKRL 36
MG+ C CFP+ R GK + G+ DD+ + L ++
Sbjct: 61 MGKWCRHCFPWCRGSGKSNVGTSGDHDDSAMKTLRSKM 98
>gi|209977003 ANKRD26-like family C, member 3 [Homo sapiens]
Length = 545
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 1 MGQLCC--FPFSRDEGKISEKNGGEPDDAELVRLSKRL 36
MG+ CC FP+ R GK + G+ DD+ + L ++
Sbjct: 61 MGKWCCHCFPWCRGSGKSNVGTSGDHDDSAMKTLRSKM 98
Score = 27.3 bits (59), Expect = 2.7
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 1 MGQLCC--FPFSRDEGKISEKNGGEPDDAELVRLSKRL 36
MG+ CC FP R GK + G+ DD+ + L ++
Sbjct: 98 MGKWCCHCFPCCRGSGKSNVGTSGDHDDSAMKTLRSKM 135
>gi|153791352 prostate, ovary, testis expressed protein on
chromosome 2 [Homo sapiens]
Length = 1075
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 1 MGQLCC--FPFSRDEGKISEKNGGEPDDAELVRLSKRL 36
MG+ CC FP R+ GK + G+ DD+ + L ++
Sbjct: 24 MGKWCCRCFPCCRESGKSNVGTSGDHDDSAMKTLRSKM 61
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 1 MGQLC--CFPFSRDEGKISEKNGGEPDDAELVRLSKRL 36
MG+ C CFP R GK + G+ DD+ + L ++
Sbjct: 61 MGKWCRHCFPCCRGSGKSNVGASGDHDDSAMKTLRNKM 98
>gi|134133226 protein expressed in prostate, ovary, testis, and
placenta 2 [Homo sapiens]
Length = 1075
Score = 28.1 bits (61), Expect = 1.6
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 1 MGQLCC--FPFSRDEGKISEKNGGEPDDAELVRLSKRL 36
MG+ CC FP R+ GK + G+ DD+ + L ++
Sbjct: 24 MGKWCCRCFPCYRESGKSNVGTSGDHDDSAMKTLRSKM 61
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 1 MGQLC--CFPFSRDEGKISEKNGGEPDDAELVRLSKRL 36
MG+ C CFP R GK + G+ DD+ + L ++
Sbjct: 61 MGKWCHHCFPCCRGSGKSNVGASGDHDDSAMKTLRNKM 98
>gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1
[Homo sapiens]
Length = 916
Score = 28.1 bits (61), Expect = 1.6
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 13 EGKISEKNGGEPDDAELVRLSKRLVENAVL------KAVQQYLE-ETQNKNKPGEGSSVK 65
E K+ +K D E + + E AV K+V+ +LE ET+ + KP + K
Sbjct: 715 EEKVEKKEEKPKDVPEKKKAESPVKEEAVAEVVTITKSVKVHLEKETKEEGKPLQQEKEK 774
Query: 66 TEAADQNGNDNENNRK 81
+A + G++ E + K
Sbjct: 775 EKAGGEGGSEEEGSDK 790
>gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2
[Homo sapiens]
Length = 540
Score = 28.1 bits (61), Expect = 1.6
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 13 EGKISEKNGGEPDDAELVRLSKRLVENAVL------KAVQQYLE-ETQNKNKPGEGSSVK 65
E K+ +K D E + + E AV K+V+ +LE ET+ + KP + K
Sbjct: 339 EEKVEKKEEKPKDVPEKKKAESPVKEEAVAEVVTITKSVKVHLEKETKEEGKPLQQEKEK 398
Query: 66 TEAADQNGNDNENNRK 81
+A + G++ E + K
Sbjct: 399 EKAGGEGGSEEEGSDK 414
>gi|46399200 testis-specific bromodomain protein [Homo sapiens]
Length = 947
Score = 28.1 bits (61), Expect = 1.6
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 11 RDEGKISEKNGGEPDDAELVRLSKRLVENAVLKAVQQYLE-----ETQNKNKPGEGSSVK 65
R+ + G DD+E R+ + LKAV Q L+ + NK E S K
Sbjct: 399 RENTNEASSEGNSSDDSEDERVKRLAKLQEQLKAVHQQLQVLSQVPFRKLNKKKE-KSKK 457
Query: 66 TEAADQNGNDNENNRK 81
+ ++ N NEN RK
Sbjct: 458 EKKKEKVNNSNENPRK 473
>gi|46399198 testis-specific bromodomain protein [Homo sapiens]
Length = 947
Score = 28.1 bits (61), Expect = 1.6
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 11 RDEGKISEKNGGEPDDAELVRLSKRLVENAVLKAVQQYLE-----ETQNKNKPGEGSSVK 65
R+ + G DD+E R+ + LKAV Q L+ + NK E S K
Sbjct: 399 RENTNEASSEGNSSDDSEDERVKRLAKLQEQLKAVHQQLQVLSQVPFRKLNKKKE-KSKK 457
Query: 66 TEAADQNGNDNENNRK 81
+ ++ N NEN RK
Sbjct: 458 EKKKEKVNNSNENPRK 473
>gi|113413200 PREDICTED: similar to protein expressed in prostate,
ovary, testis, and placenta 2 [Homo sapiens]
Length = 1038
Score = 27.7 bits (60), Expect = 2.1
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 1 MGQLC--CFPFSRDEGKISEKNGGEPDDAELVRLSKRL 36
MG+ C CFP R GK + G+ DD+ + L ++
Sbjct: 24 MGKWCRHCFPCCRGSGKSNVGTSGDQDDSTMKTLRSKM 61
>gi|239741769 PREDICTED: similar to protein expressed in prostate,
ovary, testis, and placenta 2 [Homo sapiens]
Length = 952
Score = 27.7 bits (60), Expect = 2.1
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 1 MGQLC--CFPFSRDEGKISEKNGGEPDDAELVRLSKRL 36
MG+ C CFP R GK + G+ DD+ + L ++
Sbjct: 24 MGKWCRHCFPCCRGSGKSNVGTSGDQDDSTMKTLRSKM 61
Score = 27.3 bits (59), Expect = 2.7
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 1 MGQLCC--FPFSRDEGKISEKNGGEPDDAELVRLSKRL 36
MG+ CC FP R GK + G+ DD+ + L ++
Sbjct: 61 MGKWCCHCFPCCRGSGKSNVGTSGDHDDSAMKTLRSKM 98
>gi|88953571 PREDICTED: similar to protein expressed in prostate,
ovary, testis, and placenta 2 isoform 2 [Homo sapiens]
Length = 1075
Score = 27.7 bits (60), Expect = 2.1
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 1 MGQLC--CFPFSRDEGKISEKNGGEPDDAELVRLSKRL 36
MG+ C CFP R GK + G+ DD+ + L ++
Sbjct: 24 MGKWCRHCFPCCRGSGKSNVGTSGDQDDSTMKTLRSKM 61
Score = 27.3 bits (59), Expect = 2.7
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 1 MGQLCC--FPFSRDEGKISEKNGGEPDDAELVRLSKRL 36
MG+ CC FP R GK + G+ DD+ + L ++
Sbjct: 61 MGKWCCHCFPCCRGSGKSNVGTSGDHDDSAMKTLRSKM 98
>gi|122937514 unc-13 homolog C [Homo sapiens]
Length = 2214
Score = 27.7 bits (60), Expect = 2.1
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 18 EKNGGEPDDAELVRLSKRL---VENAVLKAVQQYLEETQNKNKPGEGSSVKTEAADQNGN 74
++N P+ + KR+ + A L+A ++ + E + K G+ SSV +A +GN
Sbjct: 950 DENQNIPEQPVEITKPKRIRPSFKEAALRAYKKQMAELEEKILAGDSSSVDEKARIVSGN 1009
Query: 75 D 75
D
Sbjct: 1010 D 1010
>gi|39725938 polymerase (RNA) III (DNA directed) polypeptide A, 155kDa
[Homo sapiens]
Length = 1390
Score = 27.3 bits (59), Expect = 2.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 25 DDAELVRLSKRLVENAVLKAVQQYLEE 51
DDA+ RL K +E +L + +Y+EE
Sbjct: 1093 DDADYARLVKGRIEKTLLGEISEYIEE 1119
>gi|33300663 polycomb group ring finger 5 [Homo sapiens]
Length = 256
Score = 26.9 bits (58), Expect = 3.5
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 13/70 (18%)
Query: 23 EPDDAELVRLSKRLVENAVLKAV----QQYLE---ETQNKNKPGEGSSVKTEAA-----D 70
E + E++RL L E + K V +Q LE E KNKP E T A D
Sbjct: 62 ETNPLEMLRLDNTL-EEIIFKLVPGLREQELERESEFWKKNKPQENGQDDTSKADKPKVD 120
Query: 71 QNGNDNENNR 80
+ G++NE+++
Sbjct: 121 EEGDENEDDK 130
>gi|5802978 apolipoprotein B mRNA editing enzyme, catalytic
polypeptide-like 2 [Homo sapiens]
Length = 224
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 60 EGSSVKTEAADQNGNDNEN 78
E ++V TEAA QNG D EN
Sbjct: 5 EEAAVATEAASQNGEDLEN 23
>gi|112380630 leiomodin 1 (smooth muscle) [Homo sapiens]
Length = 600
Score = 26.6 bits (57), Expect = 4.6
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 9 FSRDEGKISEKNGGEPDDAELVR-LSKRLVENAVLKAVQQYLEETQNKNKPGEGSSVKTE 67
FSRD + K+G +P + +++R + K V AV K + K+ GE +V T+
Sbjct: 134 FSRDRDEAGGKSGEKPKEEKIIRGIDKGRVRAAVDK-------KEAGKDGRGEERAVATK 186
Query: 68 AADQNGNDNEN 78
++ + N
Sbjct: 187 KEEEKKGSDRN 197
>gi|89363026 calponin-homology and microtubule-associated protein
[Homo sapiens]
Length = 236
Score = 26.6 bits (57), Expect = 4.6
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 20 NGGEPDDA--ELVRLSKRLVENAVLKAVQQYLEETQNKNKPGEGSSVKTEAADQNG 73
N PDD ++ + + +VE VL ++Q LEE Q + K G GS + D +G
Sbjct: 81 NFSVPDDVMRKIAQCAPGVVE-LVLIPLRQRLEERQRRRKQGAGSLQELAPQDGSG 135
>gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens]
Length = 1301
Score = 26.2 bits (56), Expect = 6.0
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 10 SRDEGKISEKNGGEPDDAELVRLSKRLVENAVLKAVQQYLEETQNKNKPGEGSSVKTEAA 69
S+D G S+ G E DD++ S N+ + +K+ G+G K++++
Sbjct: 498 SKDNGNGSDSKGAEDDDSD----STSDTNNSDSNGNGNNGNDDNDKSDSGKG---KSDSS 550
Query: 70 DQNGNDNENN 79
D + +D+ N+
Sbjct: 551 DSDSSDSSNS 560
>gi|194097392 Golgi autoantigen, golgin subfamily a, 2 [Homo
sapiens]
Length = 1002
Score = 25.8 bits (55), Expect = 7.8
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 42 LKAVQQYLEETQNKNKPGEGSSVKTEAADQNGNDNE 77
L A ++ L E Q +N PG + K + +NG++ E
Sbjct: 22 LAAAKKKLREYQQRNSPGVPTGAKKKKKIKNGSNPE 57
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 25.8 bits (55), Expect = 7.8
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 11/68 (16%)
Query: 15 KISEKNGGEPDDAELVRLSKRLVENAVLKAVQQY-----LEETQNKNKPGEGSSVKTEAA 69
K +E NG +P K+L E V K Q ++ N+N+ E +T
Sbjct: 1478 KGTEANGKKPSQ------QKKLEERPVNKCSDQIKLKNTTDKKNNENRESEKKGQRTSTF 1531
Query: 70 DQNGNDNE 77
NG DN+
Sbjct: 1532 QINGKDNK 1539
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 25.8 bits (55), Expect = 7.8
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 11/68 (16%)
Query: 15 KISEKNGGEPDDAELVRLSKRLVENAVLKAVQQY-----LEETQNKNKPGEGSSVKTEAA 69
K +E NG +P K+L E V K Q ++ N+N+ E +T
Sbjct: 1352 KGTEANGKKPSQ------QKKLEERPVNKCSDQIKLKNTTDKKNNENRESEKKGQRTSTF 1405
Query: 70 DQNGNDNE 77
NG DN+
Sbjct: 1406 QINGKDNK 1413
>gi|68077168 DnaJ homology subfamily A member 5 isoform 1 [Homo
sapiens]
Length = 576
Score = 25.8 bits (55), Expect = 7.8
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 12/61 (19%)
Query: 16 ISEKNGGEPDDAELVRLSKRLVENAVLKAVQQYLEETQNKNKPGEGSSVKTEAADQNGND 75
+ E+ GE + + +K L+EN +Q ++ N N PGEG VK + D N N
Sbjct: 419 LGERRDGESEH----KCAKMLLEN------RQNYDDNFNVNGPGEG--VKVDPEDTNLNQ 466
Query: 76 N 76
+
Sbjct: 467 D 467
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.305 0.127 0.349
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,150,178
Number of Sequences: 37866
Number of extensions: 104978
Number of successful extensions: 349
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 324
Number of HSP's gapped (non-prelim): 39
length of query: 81
length of database: 18,247,518
effective HSP length: 53
effective length of query: 28
effective length of database: 16,240,620
effective search space: 454737360
effective search space used: 454737360
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.