Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 4757734
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4757734 absent in melanoma 2 [Homo sapiens]
(343 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4757734 absent in melanoma 2 [Homo sapiens] 665 0.0
gi|4505227 myeloid cell nuclear differentiation antigen [Homo sa... 186 3e-47
gi|112789562 interferon, gamma-inducible protein 16 [Homo sapiens] 183 2e-46
gi|41282051 pyrin and HIN domain family, member 1 beta 2 isoform... 172 4e-43
gi|41282048 pyrin and HIN domain family, member 1 alpha 2 isofor... 172 4e-43
gi|41282056 pyrin and HIN domain family, member 1 beta 1 isoform... 171 7e-43
gi|39540514 pyrin and HIN domain family, member 1 alpha 1 isofor... 171 7e-43
gi|4557743 Mediterranean fever protein [Homo sapiens] 37 0.026
gi|28827813 NLR family, pyrin domain containing 14 [Homo sapiens] 35 0.075
gi|8923473 NLR family, pyrin domain containing 2 [Homo sapiens] 35 0.13
gi|194018482 NLR family, pyrin domain containing 4 [Homo sapiens] 35 0.13
gi|110349721 titin isoform novex-3 [Homo sapiens] 34 0.22
gi|110349719 titin isoform N2-A [Homo sapiens] 34 0.22
gi|100814339 coiled-coil domain containing 146 [Homo sapiens] 32 0.63
gi|21955154 NLR family, pyrin domain containing 12 isoform 2 [Ho... 32 0.83
gi|36950991 nuclear receptor subfamily 2, group C, member 2 [Hom... 32 1.1
gi|157694524 plexin D1 [Homo sapiens] 32 1.1
gi|21264320 NLR family, pyrin domain containing 6 [Homo sapiens] 32 1.1
gi|19557702 surfeit 6 [Homo sapiens] 32 1.1
gi|169162310 PREDICTED: similar to hCG2041495 [Homo sapiens] 31 1.4
gi|169161845 PREDICTED: similar to hCG2041495 [Homo sapiens] 31 1.4
gi|169162679 PREDICTED: hypothetical protein LOC646377 [Homo sap... 31 1.4
gi|5032223 plexin C1 [Homo sapiens] 31 1.8
gi|148806928 hypothetical protein LOC57482 [Homo sapiens] 30 2.4
gi|7656983 TP53-target gene 5 protein [Homo sapiens] 30 2.4
gi|193788632 DnaJ (Hsp40) homolog, subfamily C, member 2 isoform... 30 2.4
gi|62243484 sarcoma antigen NY-SAR-41 [Homo sapiens] 30 2.4
gi|104526627 triadin [Homo sapiens] 30 2.4
gi|14670392 bromodomain adjacent to zinc finger domain, 1B [Homo... 30 4.1
gi|109255234 centrosomal protein 290kDa [Homo sapiens] 30 4.1
>gi|4757734 absent in melanoma 2 [Homo sapiens]
Length = 343
Score = 665 bits (1715), Expect = 0.0
Identities = 343/343 (100%), Positives = 343/343 (100%)
Query: 1 MESKYKEILLLTGLDNITDEELDRFKFFLSDEFNIATGKLHTANRIQVATLMIQNAGAVS 60
MESKYKEILLLTGLDNITDEELDRFKFFLSDEFNIATGKLHTANRIQVATLMIQNAGAVS
Sbjct: 1 MESKYKEILLLTGLDNITDEELDRFKFFLSDEFNIATGKLHTANRIQVATLMIQNAGAVS 60
Query: 61 AVMKTIRIFQKLNYMLLAKRLQEEKEKVDKQYKSVTKPKPLSQAEMSPAASAAIRNDVAK 120
AVMKTIRIFQKLNYMLLAKRLQEEKEKVDKQYKSVTKPKPLSQAEMSPAASAAIRNDVAK
Sbjct: 61 AVMKTIRIFQKLNYMLLAKRLQEEKEKVDKQYKSVTKPKPLSQAEMSPAASAAIRNDVAK 120
Query: 121 QRAAPKVSPHVKPEQKQMVAQQESIREGFQKRCLPVMVLKAKKPFTFETQEGKQEMFHAT 180
QRAAPKVSPHVKPEQKQMVAQQESIREGFQKRCLPVMVLKAKKPFTFETQEGKQEMFHAT
Sbjct: 121 QRAAPKVSPHVKPEQKQMVAQQESIREGFQKRCLPVMVLKAKKPFTFETQEGKQEMFHAT 180
Query: 181 VATEKEFFFVKVFNTLLKDKFIPKRIIIIARYYRHSGFLEVNSASRVLDAESDQKVNVPL 240
VATEKEFFFVKVFNTLLKDKFIPKRIIIIARYYRHSGFLEVNSASRVLDAESDQKVNVPL
Sbjct: 181 VATEKEFFFVKVFNTLLKDKFIPKRIIIIARYYRHSGFLEVNSASRVLDAESDQKVNVPL 240
Query: 241 NIIRKAGETPKINTLQTQPLGTIVNGLFVVQKVTEKKKNILFDLSDNTGKMEVLGVRNED 300
NIIRKAGETPKINTLQTQPLGTIVNGLFVVQKVTEKKKNILFDLSDNTGKMEVLGVRNED
Sbjct: 241 NIIRKAGETPKINTLQTQPLGTIVNGLFVVQKVTEKKKNILFDLSDNTGKMEVLGVRNED 300
Query: 301 TMKCKEGDKVRLTFFTLSKNGEKLQLTSGVHSTIKVIKAKKKT 343
TMKCKEGDKVRLTFFTLSKNGEKLQLTSGVHSTIKVIKAKKKT
Sbjct: 301 TMKCKEGDKVRLTFFTLSKNGEKLQLTSGVHSTIKVIKAKKKT 343
>gi|4505227 myeloid cell nuclear differentiation antigen [Homo
sapiens]
Length = 407
Score = 186 bits (471), Expect = 3e-47
Identities = 134/400 (33%), Positives = 200/400 (50%), Gaps = 61/400 (15%)
Query: 1 MESKYKEILLLTGLDNITDEELDRFKFFLSDEFNIATGKLHTANRIQVATLMIQNAGAVS 60
M ++YK+ILLL G + + D K L+ + + T NRI++ LM + V+
Sbjct: 1 MVNEYKKILLLKGFELMDDYHFTSIKSLLAYDLGLTTKMQEEYNRIKITDLMEKKFQGVA 60
Query: 61 AVMKTIRIFQKLNYML-LAKRLQEEKEKVDKQYKSVTKP--KPLSQAEMSPAASA----- 112
+ K I + + + + L L++EK KV K+ K+ K K ++Q E+ AA A
Sbjct: 61 CLDKLIELAKDMPSLKNLVNNLRKEKSKVAKKIKTQEKAPVKKINQEEVGLAAPAPTARN 120
Query: 113 -------------------------AIRNDVAKQRAAPK--------------------- 126
A RN V+++++ P
Sbjct: 121 KLTSEARGRIPVAQKRKTPNKEKTEAKRNKVSQEQSKPPGPSGASTSAAVDHPPLPQTSS 180
Query: 127 ---VSPHVKPEQKQMVAQQESIREGF-QKRCLPVMVLKAKKPFTFETQE-GKQEMFHATV 181
+ P Q+ +Q R Q + V+VLKA PF +E+ E GK MFHATV
Sbjct: 181 STPSNTSFTPNQETQAQRQVDARRNVPQNDPVTVVVLKATAPFKYESPENGKSTMFHATV 240
Query: 182 ATEKEFFFVKVFNTLLKDKFIPKRIIIIARYYRHSGFLEVNSASRVLDAESDQKVNVPLN 241
A++ ++F VKVF+ LK+KF+ K++I I+ Y G +E+ AS V D +Q VP
Sbjct: 241 ASKTQYFHVKVFDINLKEKFVRKKVITISDYSECKGVMEIKEASSVSDF--NQNFEVPNR 298
Query: 242 IIRKAGETPKINTLQTQPLGTIVNGLFVVQKVTEKKKNILFDLSDNTGKMEVLGVRNEDT 301
II A +TPKI+ L Q GT+V GLF++QK + KKN ++++ DNTG M+V+G
Sbjct: 299 IIEIANKTPKISQLYKQASGTMVYGLFMLQKKSVHKKNTIYEIQDNTGSMDVVGSGKWHN 358
Query: 302 MKCKEGDKVRLTFFTLSKNGEKLQLTSGVHSTIKVIKAKK 341
+KC++GDK+RL L KL+L G HS IKVIKAKK
Sbjct: 359 IKCEKGDKLRLFCLQLRTVDRKLKLVCGSHSFIKVIKAKK 398
>gi|112789562 interferon, gamma-inducible protein 16 [Homo sapiens]
Length = 729
Score = 183 bits (465), Expect = 2e-46
Identities = 135/396 (34%), Positives = 197/396 (49%), Gaps = 57/396 (14%)
Query: 1 MESKYKEILLLTGLDNITDEELDRFKFFLSDEFNIATGKLHTANRIQVATLMIQNAGAVS 60
M KYK I+LL GL+ I D K LS++ + ++IQ+A LM + +
Sbjct: 1 MGKKYKNIVLLKGLEVINDYHFRMVKSLLSNDLKLNLKMREEYDKIQIADLMEEKFRGDA 60
Query: 61 AVMKTIRIFQKLNYML-LAKRLQEEKEKVDKQYKSVTKPKPLSQAEMSPAASAAIRNDVA 119
+ K I+IF+ + + LA+ L++EK KV S + K + +P+ S+ ++ + A
Sbjct: 61 GLGKLIKIFEDIPTLEDLAETLKKEKLKVKGPALSRKRKKEVDATSPAPSTSSTVKTEGA 120
Query: 120 -------------KQRAAPKVSPHVKPEQKQMVA-------------------------- 140
K++A PK S V EQ Q +
Sbjct: 121 EATPGAQKRKKSTKEKAGPKGSK-VSEEQTQPPSPAGAGMSTAMGRSPSPKTSLSAPPNS 179
Query: 141 ------------QQESIREGFQKRCLPVMVLKAKKPFTFETQE-GKQEMFHATVATEKEF 187
Q R QKR + V VL KPF +ET E K+ MFHATVAT+ +F
Sbjct: 180 SSTENPKTVAKCQVTPRRNVLQKRPVIVKVLSTTKPFEYETPEMEKKIMFHATVATQTQF 239
Query: 188 FFVKVFNTLLKDKFIPKRIIIIARYYRHSGFLEVNSASRVLDAESDQKVNVPLNIIRKAG 247
F VKV NT LK+KF K+IIII+ Y + LEVN S V +A +Q VP II +A
Sbjct: 240 FHVKVLNTSLKEKFNGKKIIIISDYLEYDSLLEVNEESTVSEAGPNQTFEVPNKIINRAK 299
Query: 248 ETPKINTLQTQPLGTIVNGLFVVQKVTEKKKNILFDLSDNTGKMEVLGVRNEDTMKCKEG 307
ET KI+ L Q G IV G+F++ K T +K ++++ D+ GKM+V+G + C+EG
Sbjct: 300 ETLKIDILHKQASGNIVYGVFMLHKKTVNQKTTIYEIQDDRGKMDVVGTGQCHNIPCEEG 359
Query: 308 DKVRLTFFTLSKNGEKLQLTSGVHSTIKVIKAKKKT 343
DK++L F L K + +L S +HS I++ KKKT
Sbjct: 360 DKLQLFCFRLRKKNQMSKLISEMHSFIQI---KKKT 392
Score = 168 bits (426), Expect = 6e-42
Identities = 98/216 (45%), Positives = 135/216 (62%), Gaps = 7/216 (3%)
Query: 127 VSPHVKPEQKQMVAQQESIREGFQKRCLPVMVLKAKKPFTFETQEGKQEMFHATVATEKE 186
+ P +K E +++ SI + Q VMVL A + F +E +E K+ MFHATVATE E
Sbjct: 500 LKPRLKTEPEEV-----SIEDSAQSDLKEVMVLNATESFVYEPKEQKK-MFHATVATENE 553
Query: 187 FFFVKVFNTLLKDKFIPKRIIIIARYYRHSGFLEVNSASRVLDAESDQKVNVPLNIIRKA 246
F VKVFN LK+KF PK+II IA Y +GFLEV + V D +D+ + +P +IR A
Sbjct: 554 VFRVKVFNIDLKEKFTPKKIIAIANYVCRNGFLEVYPFTLVADVNADRNMEIPKGLIRSA 613
Query: 247 GETPKINTLQTQPLGTIVNGLFVVQKVTEKKKNILFDLSDNTGKMEVLGVRNEDTMKCKE 306
TPKIN L +Q G+ VNG+F V K + + +++ DNTGKMEV+ T+ C+E
Sbjct: 614 SVTPKINQLCSQTKGSFVNGVFEVHKKNVRGEFTYYEIQDNTGKMEVVVHGRLTTINCEE 673
Query: 307 GDKVRLTFFTLS-KNGEKLQLTSGVHSTIKVIKAKK 341
GDK++LT F L+ K+G +L S +HS IKVIK +K
Sbjct: 674 GDKLKLTCFELAPKSGNTGELRSVIHSHIKVIKTRK 709
>gi|41282051 pyrin and HIN domain family, member 1 beta 2 isoform
[Homo sapiens]
Length = 452
Score = 172 bits (436), Expect = 4e-43
Identities = 125/391 (31%), Positives = 189/391 (48%), Gaps = 53/391 (13%)
Query: 1 MESKYKEILLLTGLDNITDEELDRFKFFLSDEFNIATGKLHTANRIQVATLMIQNAGAVS 60
M + YK+I+LL GL+ I D K LS++ + ++IQ+A LM + +
Sbjct: 1 MANNYKKIVLLKGLEVINDYHFRIVKSLLSNDLKLNPKMKEEYDKIQIADLMEEKFPGDA 60
Query: 61 AVMKTIRIFQKLNYM----------------------------------------LLAKR 80
+ K I F+++ + L AK
Sbjct: 61 GLGKLIEFFKEIPTLGDLAETLKREKLKVKGIIPSKKTKQKEVYPATPACTPSNRLTAKG 120
Query: 81 LQE----EKEKVDKQYKSVTKPKPLSQAEMSPAASAAIRNDVAKQRAAPKVSPHVKP--- 133
+E +K K + ++ TK +S+ + P+ SA A R+ P + P
Sbjct: 121 AEETLGPQKRKKPSEEETGTKRSKMSKEQTRPSCSAGASTSTAMGRSPPPQTSSSAPPNT 180
Query: 134 ---EQKQMVAQQESI--REGFQKRCLPVMVLKAKKPFTFETQEGKQE-MFHATVATEKEF 187
E + +A + + + F++ + MVL A K F +E+ E +Q MFHATVAT+ +F
Sbjct: 181 SSTESLKPLANRHATASKNIFREDPIIAMVLNATKVFKYESSENEQRRMFHATVATQTQF 240
Query: 188 FFVKVFNTLLKDKFIPKRIIIIARYYRHSGFLEVNSASRVLDAESDQKVNVPLNIIRKAG 247
F VKV N LK KFI KRIIII+ Y + + LEVN AS V +A DQ VP +IIR+A
Sbjct: 241 FHVKVLNINLKRKFIKKRIIIISNYSKRNSLLEVNEASSVSEAGPDQTFEVPKDIIRRAK 300
Query: 248 ETPKINTLQTQPLGTIVNGLFVVQKVTEKKKNILFDLSDNTGKMEVLGVRNEDTMKCKEG 307
+ PKIN L Q G IV GLF++ +K ++++ D TG M V+G + C++G
Sbjct: 301 KIPKINILHKQTSGYIVYGLFMLHTKIVNRKTTIYEIQDKTGSMAVVGKGECHNIPCEKG 360
Query: 308 DKVRLTFFTLSKNGEKLQLTSGVHSTIKVIK 338
DK+RL F L K +L S +HS I++ K
Sbjct: 361 DKLRLFCFRLRKRENMSKLMSEMHSFIQIQK 391
>gi|41282048 pyrin and HIN domain family, member 1 alpha 2 isoform
[Homo sapiens]
Length = 483
Score = 172 bits (436), Expect = 4e-43
Identities = 125/391 (31%), Positives = 189/391 (48%), Gaps = 53/391 (13%)
Query: 1 MESKYKEILLLTGLDNITDEELDRFKFFLSDEFNIATGKLHTANRIQVATLMIQNAGAVS 60
M + YK+I+LL GL+ I D K LS++ + ++IQ+A LM + +
Sbjct: 1 MANNYKKIVLLKGLEVINDYHFRIVKSLLSNDLKLNPKMKEEYDKIQIADLMEEKFPGDA 60
Query: 61 AVMKTIRIFQKLNYM----------------------------------------LLAKR 80
+ K I F+++ + L AK
Sbjct: 61 GLGKLIEFFKEIPTLGDLAETLKREKLKVKGIIPSKKTKQKEVYPATPACTPSNRLTAKG 120
Query: 81 LQE----EKEKVDKQYKSVTKPKPLSQAEMSPAASAAIRNDVAKQRAAPKVSPHVKP--- 133
+E +K K + ++ TK +S+ + P+ SA A R+ P + P
Sbjct: 121 AEETLGPQKRKKPSEEETGTKRSKMSKEQTRPSCSAGASTSTAMGRSPPPQTSSSAPPNT 180
Query: 134 ---EQKQMVAQQESI--REGFQKRCLPVMVLKAKKPFTFETQEGKQE-MFHATVATEKEF 187
E + +A + + + F++ + MVL A K F +E+ E +Q MFHATVAT+ +F
Sbjct: 181 SSTESLKPLANRHATASKNIFREDPIIAMVLNATKVFKYESSENEQRRMFHATVATQTQF 240
Query: 188 FFVKVFNTLLKDKFIPKRIIIIARYYRHSGFLEVNSASRVLDAESDQKVNVPLNIIRKAG 247
F VKV N LK KFI KRIIII+ Y + + LEVN AS V +A DQ VP +IIR+A
Sbjct: 241 FHVKVLNINLKRKFIKKRIIIISNYSKRNSLLEVNEASSVSEAGPDQTFEVPKDIIRRAK 300
Query: 248 ETPKINTLQTQPLGTIVNGLFVVQKVTEKKKNILFDLSDNTGKMEVLGVRNEDTMKCKEG 307
+ PKIN L Q G IV GLF++ +K ++++ D TG M V+G + C++G
Sbjct: 301 KIPKINILHKQTSGYIVYGLFMLHTKIVNRKTTIYEIQDKTGSMAVVGKGECHNIPCEKG 360
Query: 308 DKVRLTFFTLSKNGEKLQLTSGVHSTIKVIK 338
DK+RL F L K +L S +HS I++ K
Sbjct: 361 DKLRLFCFRLRKRENMSKLMSEMHSFIQIQK 391
>gi|41282056 pyrin and HIN domain family, member 1 beta 1 isoform
[Homo sapiens]
Length = 461
Score = 171 bits (434), Expect = 7e-43
Identities = 127/400 (31%), Positives = 191/400 (47%), Gaps = 62/400 (15%)
Query: 1 MESKYKEILLLTGLDNITDEELDRFKFFLSDEFNIATGKLHTANRIQVATLMIQNAGAVS 60
M + YK+I+LL GL+ I D K LS++ + ++IQ+A LM + +
Sbjct: 1 MANNYKKIVLLKGLEVINDYHFRIVKSLLSNDLKLNPKMKEEYDKIQIADLMEEKFPGDA 60
Query: 61 AVMKTIRIFQKLNYML-LAKRLQEEKEKVDKQYKSV------------------------ 95
+ K I F+++ + LA+ L+ EK KV + +S+
Sbjct: 61 GLGKLIEFFKEIPTLGDLAETLKREKLKVANKIESIPVKGIIPSKKTKQKEVYPATPACT 120
Query: 96 ----------------------------TKPKPLSQAEMSPAASAAIRNDVAKQRAAPKV 127
TK +S+ + P+ SA A R+ P
Sbjct: 121 PSNRLTAKGAEETLGPQKRKKPSEEETGTKRSKMSKEQTRPSCSAGASTSTAMGRSPPPQ 180
Query: 128 SPHVKP------EQKQMVAQQESI--REGFQKRCLPVMVLKAKKPFTFETQEGKQE-MFH 178
+ P E + +A + + + F++ + MVL A K F +E+ E +Q MFH
Sbjct: 181 TSSSAPPNTSSTESLKPLANRHATASKNIFREDPIIAMVLNATKVFKYESSENEQRRMFH 240
Query: 179 ATVATEKEFFFVKVFNTLLKDKFIPKRIIIIARYYRHSGFLEVNSASRVLDAESDQKVNV 238
ATVAT+ +FF VKV N LK KFI KRIIII+ Y + + LEVN AS V +A DQ V
Sbjct: 241 ATVATQTQFFHVKVLNINLKRKFIKKRIIIISNYSKRNSLLEVNEASSVSEAGPDQTFEV 300
Query: 239 PLNIIRKAGETPKINTLQTQPLGTIVNGLFVVQKVTEKKKNILFDLSDNTGKMEVLGVRN 298
P +IIR+A + PKIN L Q G IV GLF++ +K ++++ D TG M V+G
Sbjct: 301 PKDIIRRAKKIPKINILHKQTSGYIVYGLFMLHTKIVNRKTTIYEIQDKTGSMAVVGKGE 360
Query: 299 EDTMKCKEGDKVRLTFFTLSKNGEKLQLTSGVHSTIKVIK 338
+ C++GDK+RL F L K +L S +HS I++ K
Sbjct: 361 CHNIPCEKGDKLRLFCFRLRKRENMSKLMSEMHSFIQIQK 400
>gi|39540514 pyrin and HIN domain family, member 1 alpha 1 isoform
[Homo sapiens]
Length = 492
Score = 171 bits (434), Expect = 7e-43
Identities = 127/400 (31%), Positives = 191/400 (47%), Gaps = 62/400 (15%)
Query: 1 MESKYKEILLLTGLDNITDEELDRFKFFLSDEFNIATGKLHTANRIQVATLMIQNAGAVS 60
M + YK+I+LL GL+ I D K LS++ + ++IQ+A LM + +
Sbjct: 1 MANNYKKIVLLKGLEVINDYHFRIVKSLLSNDLKLNPKMKEEYDKIQIADLMEEKFPGDA 60
Query: 61 AVMKTIRIFQKLNYML-LAKRLQEEKEKVDKQYKSV------------------------ 95
+ K I F+++ + LA+ L+ EK KV + +S+
Sbjct: 61 GLGKLIEFFKEIPTLGDLAETLKREKLKVANKIESIPVKGIIPSKKTKQKEVYPATPACT 120
Query: 96 ----------------------------TKPKPLSQAEMSPAASAAIRNDVAKQRAAPKV 127
TK +S+ + P+ SA A R+ P
Sbjct: 121 PSNRLTAKGAEETLGPQKRKKPSEEETGTKRSKMSKEQTRPSCSAGASTSTAMGRSPPPQ 180
Query: 128 SPHVKP------EQKQMVAQQESI--REGFQKRCLPVMVLKAKKPFTFETQEGKQE-MFH 178
+ P E + +A + + + F++ + MVL A K F +E+ E +Q MFH
Sbjct: 181 TSSSAPPNTSSTESLKPLANRHATASKNIFREDPIIAMVLNATKVFKYESSENEQRRMFH 240
Query: 179 ATVATEKEFFFVKVFNTLLKDKFIPKRIIIIARYYRHSGFLEVNSASRVLDAESDQKVNV 238
ATVAT+ +FF VKV N LK KFI KRIIII+ Y + + LEVN AS V +A DQ V
Sbjct: 241 ATVATQTQFFHVKVLNINLKRKFIKKRIIIISNYSKRNSLLEVNEASSVSEAGPDQTFEV 300
Query: 239 PLNIIRKAGETPKINTLQTQPLGTIVNGLFVVQKVTEKKKNILFDLSDNTGKMEVLGVRN 298
P +IIR+A + PKIN L Q G IV GLF++ +K ++++ D TG M V+G
Sbjct: 301 PKDIIRRAKKIPKINILHKQTSGYIVYGLFMLHTKIVNRKTTIYEIQDKTGSMAVVGKGE 360
Query: 299 EDTMKCKEGDKVRLTFFTLSKNGEKLQLTSGVHSTIKVIK 338
+ C++GDK+RL F L K +L S +HS I++ K
Sbjct: 361 CHNIPCEKGDKLRLFCFRLRKRENMSKLMSEMHSFIQIQK 400
>gi|4557743 Mediterranean fever protein [Homo sapiens]
Length = 781
Score = 37.0 bits (84), Expect = 0.026
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 10 LLTGLDNITDEELDRFKFFLS------DEFNIATGKLHTANRIQVATLMIQNAGAVSAVM 63
LL+ L+ + + ++FKF L + I ++ A +++ATL++ G AV
Sbjct: 9 LLSTLEELVPYDFEKFKFKLQNTSVQKEHSRIPRSQIQRARPVKMATLLVTYYGEEYAVQ 68
Query: 64 KTIRIFQKLNYMLLAKRL 81
T+++ + +N LLA+ L
Sbjct: 69 LTLQVLRAINQRLLAEEL 86
>gi|28827813 NLR family, pyrin domain containing 14 [Homo sapiens]
Length = 1093
Score = 35.4 bits (80), Expect = 0.075
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 3 SKYKEILLLTGLDNITDEELDRFKFFLSDEFNIATG-----KLHTANRIQVATLMIQNAG 57
S + + LL L+ + EEL+ FK FL + G ++ A R +A LM +
Sbjct: 8 SFFPDFGLLLYLEELNKEELNTFKLFLKETMEPEHGLTPWNEVKKARREDLANLMKKYYP 67
Query: 58 AVSAVMKTIRIFQKLNYMLLAKRLQEE 84
A +++IF K+N L +R +EE
Sbjct: 68 GEKAWSVSLKIFGKMNLKDLCERAKEE 94
>gi|8923473 NLR family, pyrin domain containing 2 [Homo sapiens]
Length = 1062
Score = 34.7 bits (78), Expect = 0.13
Identities = 23/96 (23%), Positives = 53/96 (55%), Gaps = 10/96 (10%)
Query: 14 LDNITDEELDRFKFFLSDEFNIATG-------KLHTANRIQVATLMIQNAGAVSAVMKTI 66
L+ ++ +EL +FK+ ++ F++A ++ A+ Q+ ++ + + M ++
Sbjct: 15 LEQLSQDELSKFKYLITT-FSLAHELQKIPHKEVDKADGKQLVEILTTHCDSYWVEMASL 73
Query: 67 RIFQKLNYMLLAKRLQEEKEKVDKQYKSVTKPKPLS 102
++F+K++ M L++R ++E + KS K KPLS
Sbjct: 74 QVFEKMHRMDLSERAKDEVR--EAALKSFNKRKPLS 107
>gi|194018482 NLR family, pyrin domain containing 4 [Homo sapiens]
Length = 994
Score = 34.7 bits (78), Expect = 0.13
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 3 SKYKEILLLTGLDNITDEELDRFKFFLSDEF------NIATGKLHTANRIQVATLMIQNA 56
S + + L+ L+ + EE +FK L I ++ A+R ++A L+I++
Sbjct: 4 SFFSDFGLMWYLEELKKEEFRKFKEHLKQMTLQLELKQIPWTEVKKASREELANLLIKHY 63
Query: 57 GAVSAVMKTIRIFQKLNYMLLAKRLQEEKEKVDKQYKSVTKPK 99
A T+RIFQK++ L ++ E+ K Y++ K K
Sbjct: 64 EEQQAWNITLRIFQKMDRKDLCMKVMRERTGYTKTYQAHAKQK 106
>gi|110349721 titin isoform novex-3 [Homo sapiens]
Length = 5604
Score = 33.9 bits (76), Expect = 0.22
Identities = 47/214 (21%), Positives = 84/214 (39%), Gaps = 10/214 (4%)
Query: 42 TANRIQVATLMIQNAGAVSAVMKTIRIFQKLNYMLLAKRLQEEKEKVDKQYKSVTKPKPL 101
TA IQ A ++ +AV K + K L R +E +Q VT +
Sbjct: 456 TAVHIQPAQEQVRKEAEKTAVTKVVVAADKAKEQELKSRTKEVITTKQEQMH-VTHEQIR 514
Query: 102 SQAEMSPAASAAIRNDVAKQRAAPKVSPHVKPEQKQMVAQQESIREGFQKRCLPVMVLKA 161
+ E + I AK++ ++S + +QKQ+ QE+IR+ + ++V+
Sbjct: 515 KETEKTFVPKVVISAAKAKEQET-RISEEITKKQKQVT--QEAIRQETEITAASMVVVAT 571
Query: 162 KKPFTFETQEGKQEMFHATVATEKEFFFVKVFNTLLKDKFIPKRIIIIARYYRHSGFLEV 221
K ET G QE T + + K+ K +PK I+ + ++
Sbjct: 572 AKSTKLETVPGAQEE-TTTQQDQMHLSYEKIMKETRK-TVVPKVIVATPKVKEQ----DL 625
Query: 222 NSASRVLDAESDQKVNVPLNIIRKAGETPKINTL 255
S R ++V + +RK E ++T+
Sbjct: 626 VSRGREGITTKREQVQITQEKMRKEAEKTALSTI 659
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 33.9 bits (76), Expect = 0.22
Identities = 47/214 (21%), Positives = 84/214 (39%), Gaps = 10/214 (4%)
Query: 42 TANRIQVATLMIQNAGAVSAVMKTIRIFQKLNYMLLAKRLQEEKEKVDKQYKSVTKPKPL 101
TA IQ A ++ +AV K + K L R +E +Q VT +
Sbjct: 456 TAVHIQPAQEQVRKEAEKTAVTKVVVAADKAKEQELKSRTKEVITTKQEQMH-VTHEQIR 514
Query: 102 SQAEMSPAASAAIRNDVAKQRAAPKVSPHVKPEQKQMVAQQESIREGFQKRCLPVMVLKA 161
+ E + I AK++ ++S + +QKQ+ QE+IR+ + ++V+
Sbjct: 515 KETEKTFVPKVVISAAKAKEQET-RISEEITKKQKQVT--QEAIRQETEITAASMVVVAT 571
Query: 162 KKPFTFETQEGKQEMFHATVATEKEFFFVKVFNTLLKDKFIPKRIIIIARYYRHSGFLEV 221
K ET G QE T + + K+ K +PK I+ + ++
Sbjct: 572 AKSTKLETVPGAQEE-TTTQQDQMHLSYEKIMKETRK-TVVPKVIVATPKVKEQ----DL 625
Query: 222 NSASRVLDAESDQKVNVPLNIIRKAGETPKINTL 255
S R ++V + +RK E ++T+
Sbjct: 626 VSRGREGITTKREQVQITQEKMRKEAEKTALSTI 659
>gi|100814339 coiled-coil domain containing 146 [Homo sapiens]
Length = 955
Score = 32.3 bits (72), Expect = 0.63
Identities = 45/211 (21%), Positives = 93/211 (44%), Gaps = 28/211 (13%)
Query: 1 MESKYKEILLLTGLDNITDEELDRFKFFLSDEFNIATGKLHTANRIQVATLMIQNAGAVS 60
M ++ E+ LL T E++ + +F L N ++++ L QN +
Sbjct: 79 MSTQESEVQLLQNAKRFT-EQIQQQQFHLQQADNFPEAFSTEVSKMREQLLKYQNE--YN 135
Query: 61 AVMKTIRIFQKLNYMLLAKRLQEEKEKVDKQYKSVTKPKPL-SQAEMSPAASAAIRNDVA 119
AV + ++ + L+EEK + K+++ +TKP + + ++ ++ +R ++
Sbjct: 136 AVKE-----REFHNQYRLNSLKEEKIIIVKEFEKITKPGEMEKKMKILRESTEELRKEIM 190
Query: 120 KQRAAPK-VSPHVKPEQKQMVAQQESIRE--GFQ---------KRCLPVMVLKAKKPFTF 167
+++ K + + +QKQ++ +Q+ + E G Q + +PV + K + T
Sbjct: 191 QKKLEIKNLREDLASKQKQLLKEQKELEELLGHQVVLKDEVAHHQTIPVQIGKEIEKIT- 249
Query: 168 ETQEGKQEMFHATVATEKEFFFVKVFNTLLK 198
K EM + E+E VK N LK
Sbjct: 250 ---RKKVEMEKKKIVLEQE---VKTLNDSLK 274
>gi|21955154 NLR family, pyrin domain containing 12 isoform 2
[Homo sapiens]
Length = 1061
Score = 32.0 bits (71), Expect = 0.83
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 10 LLTGLDNITDEELDRFKFFLS-----DEFNIATGKLHTANRIQVATLMIQNAGAVSAVMK 64
L T L+ + EL +FK +L E I G + A +++A L+I + G A
Sbjct: 13 LSTYLEELEAVELKKFKLYLGTATELGEGKIPWGSMEKAGPLEMAQLLITHFGPEEAWRL 72
Query: 65 TIRIFQKLNYMLLAKRLQEE 84
+ F+++N L +R Q E
Sbjct: 73 ALSTFERINRKDLWERGQRE 92
>gi|36950991 nuclear receptor subfamily 2, group C, member 2 [Homo
sapiens]
Length = 615
Score = 31.6 bits (70), Expect = 1.1
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 216 SGFLEVNSASRVLDAESDQKVNVPLNIIRKAGETPKINTLQTQPLGTIVNGLFVVQKVTE 275
S F +N V D ++ QK+ + + A +PK + T P G + + T
Sbjct: 34 SVFTSLNKEKIVTDQQTGQKIQIVTAV--DASGSPKQQFILTSPDGAGTGKVILASPETS 91
Query: 276 KKKNILFDLSDN--TGKMEVL 294
K ++F SDN G+++++
Sbjct: 92 SAKQLIFTTSDNLVPGRIQIV 112
>gi|157694524 plexin D1 [Homo sapiens]
Length = 1925
Score = 31.6 bits (70), Expect = 1.1
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 73 NYMLLAKRLQEEKEKVDKQYKSVTKPKPLSQAEMS---PAASAAIRNDVAKQRAAPKVSP 129
N +L AK + E ++ V + YK + PLS+ EM+ S +N+ A ++
Sbjct: 1820 NKLLYAKEIPEYRKIVQRYYKQIQDMTPLSEQEMNAHLAEESRKYQNEFNTNVAMAEIYK 1879
Query: 130 HVKPEQKQMVAQQES 144
+ K + Q++A E+
Sbjct: 1880 YAKRYRPQIMAALEA 1894
>gi|21264320 NLR family, pyrin domain containing 6 [Homo sapiens]
Length = 892
Score = 31.6 bits (70), Expect = 1.1
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 9 LLLTGLDNITDEELDRFKFFL----SDEFNIATGKLHTANRIQVATLMIQNAGAVSAVMK 64
LLL L+ ++ E+L RF+ L D +I G+L A+ + +A + Q G A+
Sbjct: 21 LLLAALEELSQEQLKRFRHKLRDVGPDGRSIPWGRLERADAVDLAEQLAQFYGPEPALEV 80
Query: 65 TIRIFQKLNYMLLAKRLQEEK 85
+ ++ + +A +LQE +
Sbjct: 81 ARKTLKRADARDVAAQLQERR 101
>gi|19557702 surfeit 6 [Homo sapiens]
Length = 361
Score = 31.6 bits (70), Expect = 1.1
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 79 KRLQEEKEKVDKQYKSVTKPKPLSQAEMSPAASAAIRNDVAKQRAA 124
K+ ++ ++K K+ + + K S E SPAAS A R + AK+ AA
Sbjct: 46 KKRKKTQKKFRKREEKAAEHKAKSLGEKSPAASGARRPEAAKEEAA 91
>gi|169162310 PREDICTED: similar to hCG2041495 [Homo sapiens]
Length = 196
Score = 31.2 bits (69), Expect = 1.4
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 1 MESKYKEILLLTGLDNITDEELDRFKFFLSDEFNIATGKLHTANRIQVATLM 52
M SKYK +LL GL+ I D L ++ + + + ++IQ+A LM
Sbjct: 41 MVSKYKNNVLLKGLEAINDYHFSIINSLLINDLKLNSTRRDEYDKIQIADLM 92
>gi|169161845 PREDICTED: similar to hCG2041495 [Homo sapiens]
Length = 196
Score = 31.2 bits (69), Expect = 1.4
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 1 MESKYKEILLLTGLDNITDEELDRFKFFLSDEFNIATGKLHTANRIQVATLM 52
M SKYK +LL GL+ I D L ++ + + + ++IQ+A LM
Sbjct: 41 MVSKYKNNVLLKGLEAINDYHFSIINSLLINDLKLNSTRRDEYDKIQIADLM 92
>gi|169162679 PREDICTED: hypothetical protein LOC646377 [Homo
sapiens]
Length = 196
Score = 31.2 bits (69), Expect = 1.4
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 1 MESKYKEILLLTGLDNITDEELDRFKFFLSDEFNIATGKLHTANRIQVATLM 52
M SKYK +LL GL+ I D L ++ + + + ++IQ+A LM
Sbjct: 41 MVSKYKNNVLLKGLEAINDYHFSIINSLLINDLKLNSTRRDEYDKIQIADLM 92
>gi|5032223 plexin C1 [Homo sapiens]
Length = 1568
Score = 30.8 bits (68), Expect = 1.8
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 73 NYMLLAKRLQEEKEKVDKQYKSVTKPKPLSQAEMS---PAASAAIRNDVAKQRAAPKVSP 129
N +L AK + KE+V YK++ PLS +EM S N+ ++ A ++
Sbjct: 1467 NKLLYAKDIPTYKEEVKSYYKAIRDLPPLSSSEMEEFLTQESKKHENEFNEEVALTEIYK 1526
Query: 130 HVKPEQKQMVAQQESIR--EGFQKRCLPVMVLKAKK 163
++ +++ + E R E QK+ L V VL +K
Sbjct: 1527 YIVKYFDEILNKLERERGLEEAQKQLLHVKVLFDEK 1562
>gi|148806928 hypothetical protein LOC57482 [Homo sapiens]
Length = 1233
Score = 30.4 bits (67), Expect = 2.4
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Query: 70 QKLNYMLLAKRLQEEKEKVDKQYKSVTKPKPLSQAEMSPAASAAIRNDVAKQRAAPKVSP 129
++ NY L Q+ ++K K++ S A+ P A+ + R + + A K P
Sbjct: 850 RRTNYSLRFNCDQQAEQKKKKRHSSTG-----DSADAGPPAAGSARGEKEMEGVALKHGP 904
Query: 130 HVKPEQKQMVAQQESIREGFQKRCLPV 156
+ E+KQ + + E R +PV
Sbjct: 905 SLPQERKQAPSTRRDSAEPSSSRSVPV 931
>gi|7656983 TP53-target gene 5 protein [Homo sapiens]
Length = 290
Score = 30.4 bits (67), Expect = 2.4
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 84 EKEKVDKQYKSVTKPKPLSQAEMSPAASAAIRNDVAKQRAA-PKVSPHVKPEQKQMVAQQ 142
EKE K+ +S PK E + +RN AA P+ H++PE + ++
Sbjct: 107 EKELKSKKLESTGDPKKKEYKEWKSQVQSGMRNKEKTSLAAMPRKEKHIEPEVPR-TSRD 165
Query: 143 ESIREGFQKR 152
+S+ G Q R
Sbjct: 166 DSLNPGVQGR 175
>gi|193788632 DnaJ (Hsp40) homolog, subfamily C, member 2 isoform 2
[Homo sapiens]
Length = 568
Score = 30.4 bits (67), Expect = 2.4
Identities = 34/150 (22%), Positives = 64/150 (42%), Gaps = 16/150 (10%)
Query: 36 ATGKLHTANRIQVATLMIQNAGAVSAVMKTIRIFQKLNYMLLAKRLQEEKEKVDKQYKSV 95
A K NRI+ ++ NA + +K + +K AK+ E+K K + + K
Sbjct: 256 AQRKKEEMNRIRT---LVDNAYSCDPRIKKFKEEEK------AKKEAEKKAKAEAKRKEQ 306
Query: 96 TKPKPLSQAEMSPAASAAIRNDVAKQRAAPKVSPHVKPEQKQMVAQQESIREGFQKRCLP 155
+ QAE+ A +AK++ +V +K+ Q+++I++ QK
Sbjct: 307 EAKEKQRQAELEAAR-------LAKEKEEEEVRQQALLAKKEKDIQKKAIKKERQKLRNS 359
Query: 156 VMVLKAKKPFTFETQEGKQEMFHATVATEK 185
+ + + E +E + M A+ TEK
Sbjct: 360 CKIEEINEQIRKEKEEAEARMRQASKNTEK 389
>gi|62243484 sarcoma antigen NY-SAR-41 [Homo sapiens]
Length = 1417
Score = 30.4 bits (67), Expect = 2.4
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 71 KLNYMLLAKRLQEEKEKVDKQYKSVTKPKPLSQAEMSPAASAAIRNDVAKQRAAPKVSPH 130
K +L +L+ KEK +KQ K ++ Q E+ I+N ++ + V
Sbjct: 855 KEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELK------IKNHSLQETSEQNVILQ 908
Query: 131 VKPEQKQMVAQQESIREG 148
+Q+Q + QQE+IR G
Sbjct: 909 HTLQQQQQMLQQETIRNG 926
>gi|104526627 triadin [Homo sapiens]
Length = 729
Score = 30.4 bits (67), Expect = 2.4
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
Query: 85 KEKVDKQYKSVT-----KPKPLSQAEMSPAASAAIRNDVAKQRAAPKVSPHV--KPEQKQ 137
+EKV KQ K+VT KPKP +AE +I+ D K + PK + V ++K
Sbjct: 558 EEKVLKQVKAVTIEKTAKPKPTKKAEHREREPPSIKTD--KPKPTPKGTSEVTESGKKKT 615
Query: 138 MVAQQES 144
++++ES
Sbjct: 616 EISEKES 622
>gi|14670392 bromodomain adjacent to zinc finger domain, 1B [Homo
sapiens]
Length = 1483
Score = 29.6 bits (65), Expect = 4.1
Identities = 33/160 (20%), Positives = 68/160 (42%), Gaps = 25/160 (15%)
Query: 20 EELDRFKFFLSDEFNIATGKLHTANRIQVATLMIQNAGAVSAVMKTIRIFQKLNYMLLAK 79
E+L+ +FF +L + ++Q+ T + +V + Q+++ L +
Sbjct: 730 EKLETSEFF----------ELTSEEKLQILTALCHRILMTYSVQDHMETRQQMSAELWKE 779
Query: 80 RLQEEKEKVDKQYKSVTKPKPLSQAEMSPAASAAIRNDVAK---QRAAPKVSPHVKPEQK 136
RL KE+ DK+ K K + E + + N + K ++ K P V E +
Sbjct: 780 RLAVLKEENDKKRAEKQKRK---EMEAKNKENGKVENGLGKTDRKKEIVKFEPQVDTEAE 836
Query: 137 QMVAQQESIREGFQKRCLPVMVLKAKKPFTFETQEGKQEM 176
M++ +S R ++ ++AKK + +E K ++
Sbjct: 837 DMISAVKSRR---------LLAIQAKKEREIQEREMKVKL 867
>gi|109255234 centrosomal protein 290kDa [Homo sapiens]
Length = 2479
Score = 29.6 bits (65), Expect = 4.1
Identities = 19/75 (25%), Positives = 37/75 (49%)
Query: 77 LAKRLQEEKEKVDKQYKSVTKPKPLSQAEMSPAASAAIRNDVAKQRAAPKVSPHVKPEQK 136
L +RL+ + +KQ K++++ +AEM+ AA I + +++ A V V +
Sbjct: 1726 LVERLKSQLALKEKQQKALSRALLELRAEMTAAAEERIISATSQKEAHLNVQQIVDRHTR 1785
Query: 137 QMVAQQESIREGFQK 151
++ Q E + E K
Sbjct: 1786 ELKTQVEDLNENLLK 1800
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.132 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,026,312
Number of Sequences: 37866
Number of extensions: 447531
Number of successful extensions: 1828
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1772
Number of HSP's gapped (non-prelim): 84
length of query: 343
length of database: 18,247,518
effective HSP length: 103
effective length of query: 240
effective length of database: 14,347,320
effective search space: 3443356800
effective search space used: 3443356800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.