Guide to the Human Genome
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Name: AIM2 Sequence: fasta or formatted (343aa) NCBI GI: 4757734
Description:

absent in melanoma 2

Referenced in:

Interferon
Pyrin and Associated Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         24           2
 C cysteine            0.6          2           1
 D aspartate           3.8         13           1
 E glutamate           7.3         25           2
 F phenylalanine       5.5         19           3
 G glycine             4.1         14           1
 H histidine           1.5          5           1
 I isoleucine          6.1         21           4
 K lysine             13.1         45           3
 L leucine             8.7         30           3
 M methionine          2.9         10           1
 N asparagine          4.7         16           1
 P proline             3.5         12           1
 Q glutamine           5.5         19           2
 R arginine            4.4         15           1
 S serine              5.0         17           1
 T threonine           7.0         24           1
 V valine              7.9         27           2
 W tryptophan          0.0          0           0
 Y tyrosine            1.5          5           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   absent in melanoma 2 
MNDA                  0.252   myeloid cell nuclear differentiation antigen 
IFI16                 0.247   interferon, gamma-inducible protein 16 
PYHIN1                0.230   pyrin and HIN domain family, member 1 beta 2 isoform...
PYHIN1                0.230   pyrin and HIN domain family, member 1 alpha 2 isofor...
PYHIN1                0.228   pyrin and HIN domain family, member 1 beta 1 isoform...
PYHIN1                0.228   pyrin and HIN domain family, member 1 alpha 1 isofor...
MEFV                  0.019   Mediterranean fever protein 
NLRP14                0.016   NLR family, pyrin domain containing 14 
NLRP2                 0.016   NLR family, pyrin domain containing 2 
NLRP4                 0.016   NLR family, pyrin domain containing 4 
TTN                   0.014   titin isoform novex-3 
TTN                   0.014   titin isoform N2-A 
CCDC146               0.011   coiled-coil domain containing 146 
NLRP12                0.011   NLR family, pyrin domain containing 12 isoform 2 [Ho...
NR2C2                 0.011   nuclear receptor subfamily 2, group C, member 2 [Hom...
PLXND1                0.011   plexin D1 
NLRP6                 0.011   NLR family, pyrin domain containing 6 
SURF6                 0.011   surfeit 6 
LOC646377             0.009   PREDICTED: similar to hCG2041495 
LOC646377             0.009   PREDICTED: similar to hCG2041495 
LOC646377             0.009   PREDICTED: hypothetical protein LOC646377 
PLXNC1                0.009   plexin C1 
KIAA1211              0.008   hypothetical protein LOC57482 
TP53TG5               0.008   TP53-target gene 5 protein 
DNAJC2                0.008   DnaJ (Hsp40) homolog, subfamily C, member 2 isoform...
CCDC18                0.008   sarcoma antigen NY-SAR-41 
TRDN                  0.008   triadin 
BAZ1B                 0.008   bromodomain adjacent to zinc finger domain, 1B [Homo...
CEP290                0.008   centrosomal protein 290kDa 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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