Guide to the Human Genome
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Name: PLXND1 Sequence: fasta or formatted (1925aa) NCBI GI: 157694524
Description:

plexin D1

Referenced in:

Semaphorins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0        173           4
 C cysteine            3.1         60           1
 D aspartate           4.4         85           2
 E glutamate           5.8        111           2
 F phenylalanine       3.7         71           2
 G glycine             6.0        116           2
 H histidine           2.4         46           2
 I isoleucine          4.5         87           2
 K lysine              3.9         75           2
 L leucine            10.4        200           7
 M methionine          2.0         39           1
 N asparagine          3.9         75           2
 P proline             7.0        134           3
 Q glutamine           4.8         92           2
 R arginine            6.0        116           3
 S serine              7.3        140           2
 T threonine           5.4        103           2
 V valine              7.0        134           3
 W tryptophan          0.9         17           1
 Y tyrosine            2.6         51           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   plexin D1 
PLXNB3                0.244   plexin B3 isoform 2 
PLXNB3                0.242   plexin B3 isoform 1 
PLXNB2                0.234   plexin B2 
PLXNA2                0.224   plexin A2 
PLXNA4                0.223   plexin A4 isoform 1 
PLXNA1                0.216   plexin A1 
PLXNA3                0.216   plexin A3 
PLXNB1                0.190   plexin B1 
PLXNB1                0.190   plexin B1 
PLXNC1                0.133   plexin C1 
MST1R                 0.019   macrophage stimulating 1 receptor precursor 
MET                   0.019   met proto-oncogene isoform b precursor 
PLXNA4                0.016   plexin A4 isoform 3 
PLXNA4                0.016   plexin A4 isoform 2 
MET                   0.016   met proto-oncogene isoform a precursor 
PKHD1L1               0.011   fibrocystin L 
SEMA4B                0.009   semaphorin 4B precursor 
SEMA4B                0.009   semaphorin 4B precursor 
SEMA5B                0.008   semaphorin 5B isoform 1 
SEMA4D                0.007   semaphorin 4D isoform 2 
PKHD1                 0.007   fibrocystin isoform 2 
PKHD1                 0.007   fibrocystin isoform 1 
SEMA5A                0.006   semaphorin 5A 
SEMA4C                0.006   semaphorin 4C 
SEMA4D                0.006   semaphorin 4D isoform 1 
SEMA6B                0.006   semaphorin 6B precursor 
SEMA3C                0.005   semaphorin 3C 
SEMA3E                0.005   semaphorin 3E 
SEMA4A                0.005   semaphorin B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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