Guide to the Human Genome
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Name: LOC646377 Sequence: fasta or formatted (196aa) NCBI GI: 169162310
Description:

PREDICTED: similar to hCG2041495

Not currently referenced in the text

Other entries for this name:
alt prot {196aa} PREDICTED: similar to hCG2041495
alt mRNA {196aa} PREDICTED: hypothetical protein LOC646377
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6          9           1
 C cysteine            0.5          1           1
 D aspartate           6.6         13           1
 E glutamate           5.1         10           2
 F phenylalanine       4.1          8           1
 G glycine             7.1         14           2
 H histidine           2.0          4           1
 I isoleucine          5.6         11           2
 K lysine             10.7         21           2
 L leucine            10.2         20           2
 M methionine          1.5          3           1
 N asparagine          6.1         12           2
 P proline             4.6          9           1
 Q glutamine           3.6          7           1
 R arginine            6.6         13           2
 S serine              7.7         15           2
 T threonine           7.7         15           2
 V valine              4.1          8           2
 W tryptophan          0.0          0           0
 Y tyrosine            1.5          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2041495 
LOC646377             1.000   PREDICTED: hypothetical protein LOC646377 
LOC646377             0.989   PREDICTED: similar to hCG2041495 
PYHIN1                0.342   pyrin and HIN domain family, member 1 beta 1 isoform...
PYHIN1                0.342   pyrin and HIN domain family, member 1 alpha 1 isofor...
PYHIN1                0.292   pyrin and HIN domain family, member 1 beta 2 isoform...
PYHIN1                0.292   pyrin and HIN domain family, member 1 alpha 2 isofor...
IFI16                 0.265   interferon, gamma-inducible protein 16 
MNDA                  0.180   myeloid cell nuclear differentiation antigen 
AIM2                  0.016   absent in melanoma 2 
FN1                   0.008   fibronectin 1 isoform 3 preproprotein 
FN1                   0.008   fibronectin 1 isoform 1 preproprotein 
FN1                   0.008   fibronectin 1 isoform 4 preproprotein 
FN1                   0.008   fibronectin 1 isoform 5 preproprotein 
FN1                   0.008   fibronectin 1 isoform 2 preproprotein 
FN1                   0.008   fibronectin 1 isoform 6 preproprotein 
FN1                   0.008   fibronectin 1 isoform 7 preproprotein 
TXNDC11               0.005   thioredoxin domain containing 11 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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