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Search of human proteins with 47086487
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|47086487 LysM, putative peptidoglycan-binding, domain
containing 1 isoform a [Homo sapiens]
(227 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|47086487 LysM, putative peptidoglycan-binding, domain contain... 456 e-129
gi|211938454 LysM, putative peptidoglycan-binding, domain contai... 337 4e-93
gi|23503313 LysM, putative peptidoglycan-binding, domain contain... 119 3e-27
gi|221139701 LysM, putative peptidoglycan-binding, domain contai... 80 1e-15
gi|84370276 LysM, putative peptidoglycan-binding, domain contain... 40 0.001
gi|145580608 WD repeat domain 62 isoform 1 [Homo sapiens] 33 0.20
gi|145580610 WD repeat domain 62 isoform 2 [Homo sapiens] 33 0.20
gi|7657550 sentrin/SUMO-specific protease 1 [Homo sapiens] 33 0.26
gi|21361766 zinc finger protein 692 isoform 2 [Homo sapiens] 33 0.26
gi|209862873 zinc finger protein 692 isoform 1 [Homo sapiens] 33 0.26
gi|4502425 bone morphogenetic protein 6 preproprotein [Homo sapi... 32 0.34
gi|194306543 oxidation resistance 1 isoform 2 [Homo sapiens] 32 0.34
gi|194306541 oxidation resistance 1 isoform 1 [Homo sapiens] 32 0.34
gi|222418633 family with sequence similarity 71, member B [Homo ... 32 0.45
gi|157694494 MYB binding protein 1a isoform 1 [Homo sapiens] 32 0.58
gi|157694492 MYB binding protein 1a isoform 2 [Homo sapiens] 32 0.58
gi|168229174 RNA binding motif protein 27 [Homo sapiens] 31 0.99
gi|66346693 FAT tumor suppressor 1 precursor [Homo sapiens] 30 1.3
gi|170932526 nuclear receptor coactivator 7 isoform 2 [Homo sapi... 30 1.3
gi|170932524 nuclear receptor coactivator 7 isoform 1 [Homo sapi... 30 1.3
gi|4885073 activating transcription factor 1 [Homo sapiens] 30 1.7
gi|110347463 human immunodeficiency virus type I enhancer bindin... 30 1.7
gi|94536805 splicing factor YT521-B isoform 2 [Homo sapiens] 30 1.7
gi|30181233 leucine-rich repeats and calponin homology (CH) doma... 30 1.7
gi|72534750 splicing factor YT521-B isoform 1 [Homo sapiens] 30 1.7
gi|100816397 MYST histone acetyltransferase (monocytic leukemia)... 30 2.2
gi|116812573 CWC15 homolog [Homo sapiens] 29 2.9
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 29 2.9
gi|221219020 NYD-SP11 protein [Homo sapiens] 29 3.8
gi|223633988 hypothetical protein LOC85379 [Homo sapiens] 29 3.8
>gi|47086487 LysM, putative peptidoglycan-binding, domain containing
1 isoform a [Homo sapiens]
Length = 227
Score = 456 bits (1173), Expect = e-129
Identities = 227/227 (100%), Positives = 227/227 (100%)
Query: 1 MASPSRQPPPGGSGLLQGSRARSYGSLVQSACSPVRERRLEHQLEPGDTLAGLALKYGVT 60
MASPSRQPPPGGSGLLQGSRARSYGSLVQSACSPVRERRLEHQLEPGDTLAGLALKYGVT
Sbjct: 1 MASPSRQPPPGGSGLLQGSRARSYGSLVQSACSPVRERRLEHQLEPGDTLAGLALKYGVT 60
Query: 61 MEQIKRANRLYTNDSIFLKKTLYIPILTEPRDLFNGLDSEEEKDGEEKVHPSNSEVWPHS 120
MEQIKRANRLYTNDSIFLKKTLYIPILTEPRDLFNGLDSEEEKDGEEKVHPSNSEVWPHS
Sbjct: 61 MEQIKRANRLYTNDSIFLKKTLYIPILTEPRDLFNGLDSEEEKDGEEKVHPSNSEVWPHS 120
Query: 121 TERKKQETGAGRANGEVLPTPGQETPTPIHDLSASDFLKKLDSQISLSKKAAAQKLKKGE 180
TERKKQETGAGRANGEVLPTPGQETPTPIHDLSASDFLKKLDSQISLSKKAAAQKLKKGE
Sbjct: 121 TERKKQETGAGRANGEVLPTPGQETPTPIHDLSASDFLKKLDSQISLSKKAAAQKLKKGE 180
Query: 181 NGVPGEDAGLHLSSPWMQQRAVLGPVPLTRTSRTRTLRDQEDEIFKL 227
NGVPGEDAGLHLSSPWMQQRAVLGPVPLTRTSRTRTLRDQEDEIFKL
Sbjct: 181 NGVPGEDAGLHLSSPWMQQRAVLGPVPLTRTSRTRTLRDQEDEIFKL 227
>gi|211938454 LysM, putative peptidoglycan-binding, domain
containing 1 isoform b [Homo sapiens]
Length = 179
Score = 337 bits (865), Expect = 4e-93
Identities = 167/167 (100%), Positives = 167/167 (100%)
Query: 61 MEQIKRANRLYTNDSIFLKKTLYIPILTEPRDLFNGLDSEEEKDGEEKVHPSNSEVWPHS 120
MEQIKRANRLYTNDSIFLKKTLYIPILTEPRDLFNGLDSEEEKDGEEKVHPSNSEVWPHS
Sbjct: 13 MEQIKRANRLYTNDSIFLKKTLYIPILTEPRDLFNGLDSEEEKDGEEKVHPSNSEVWPHS 72
Query: 121 TERKKQETGAGRANGEVLPTPGQETPTPIHDLSASDFLKKLDSQISLSKKAAAQKLKKGE 180
TERKKQETGAGRANGEVLPTPGQETPTPIHDLSASDFLKKLDSQISLSKKAAAQKLKKGE
Sbjct: 73 TERKKQETGAGRANGEVLPTPGQETPTPIHDLSASDFLKKLDSQISLSKKAAAQKLKKGE 132
Query: 181 NGVPGEDAGLHLSSPWMQQRAVLGPVPLTRTSRTRTLRDQEDEIFKL 227
NGVPGEDAGLHLSSPWMQQRAVLGPVPLTRTSRTRTLRDQEDEIFKL
Sbjct: 133 NGVPGEDAGLHLSSPWMQQRAVLGPVPLTRTSRTRTLRDQEDEIFKL 179
>gi|23503313 LysM, putative peptidoglycan-binding, domain containing
2 isoform 1 [Homo sapiens]
Length = 215
Score = 119 bits (297), Expect = 3e-27
Identities = 76/170 (44%), Positives = 101/170 (59%), Gaps = 21/170 (12%)
Query: 16 LQGSRARSYGSLVQSAC---SPVRERRLEHQLEPGDTLAGLALKYGVTMEQIKRANRLYT 72
L ++ RSYGS + V ER +EH++ GDTL G+ALKYGVTMEQIKRAN+L+T
Sbjct: 44 LARTKTRSYGSTASVRAPLGAGVIERHVEHRVRAGDTLQGIALKYGVTMEQIKRANKLFT 103
Query: 73 NDSIFLKKTLYIPILTEPRDLFNGLDSEEEKDGEEKVHPSNSEVWPHSTERKKQETGAGR 132
ND IFLKKTL IP+++E LFNGL+S + + E + + E P
Sbjct: 104 NDCIFLKKTLNIPVISEKPLLFNGLNSIDSPENETADNSFSQEEEP-------------V 150
Query: 133 ANGEVLPTPGQE----TPTPIHDLSASDFLKKLDSQISLSKKAAAQKLKK 178
GE LP P + P ++SA DFL++LD QI LS + AA+KLK+
Sbjct: 151 VAGEDLPPPSPQESDVQPVQPEEVSARDFLQRLDLQIKLSTQ-AAKKLKE 199
>gi|221139701 LysM, putative peptidoglycan-binding, domain
containing 2 isoform 2 [Homo sapiens]
Length = 124
Score = 80.5 bits (197), Expect = 1e-15
Identities = 53/122 (43%), Positives = 71/122 (58%), Gaps = 18/122 (14%)
Query: 61 MEQIKRANRLYTNDSIFLKKTLYIPILTEPRDLFNGLDSEEEKDGEEKVHPSNSEVWPHS 120
MEQIKRAN+L+TND IFLKKTL IP+++E LFNGL+S + + E + + E P
Sbjct: 1 MEQIKRANKLFTNDCIFLKKTLNIPVISEKPLLFNGLNSIDSPENETADNSFSQEEEP-- 58
Query: 121 TERKKQETGAGRANGEVLPTPGQE----TPTPIHDLSASDFLKKLDSQISLSKKAAAQKL 176
GE LP P + P ++SA DFL++LD QI LS + AA+KL
Sbjct: 59 -----------VVAGEDLPPPSPQESDVQPVQPEEVSARDFLQRLDLQIKLSTQ-AAKKL 106
Query: 177 KK 178
K+
Sbjct: 107 KE 108
>gi|84370276 LysM, putative peptidoglycan-binding, domain containing
3 [Homo sapiens]
Length = 306
Score = 40.4 bits (93), Expect = 0.001
Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 22/136 (16%)
Query: 40 LEHQLEPGDTLAGLALKYGVTMEQIKRANRLYTNDSIFLKKTLYIPILTEPRDLFNGLDS 99
L ++ GDTL +AL+Y T+ IKR N L ++ F +++ IP+ F+ L
Sbjct: 65 LTKDIQEGDTLNAIALQYCCTVADIKRVNNLISDQDFFALRSIKIPV-----KKFSSLT- 118
Query: 100 EEEKDGEEKVHPSNSEVWPHSTERKKQETGAGRANGEVLPTPGQETPTPIHDLSASDFLK 159
E P + HS+ + E E+LP + + SA FLK
Sbjct: 119 ------ETLCPPKGRQTSRHSSVQYSSE------QQEILPA----NDSLAYSDSAGSFLK 162
Query: 160 KLDSQISLSKKAAAQK 175
++D I K K
Sbjct: 163 EVDRDIEQIVKCTDNK 178
>gi|145580608 WD repeat domain 62 isoform 1 [Homo sapiens]
Length = 1523
Score = 33.1 bits (74), Expect = 0.20
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 89 EPRDLFNGLDSEEEKD-GEEKVHPS--NSEVWPHSTERKKQETGAGRANGEVLPTPGQET 145
E DL+ L S + D G+++ ++ +W HS + G A + LP+PG +
Sbjct: 1430 EALDLYRVLVSSGQVDTGQQQARTELVSTFLWIHSQLEAECLVGTSVAPAQALPSPGPPS 1489
Query: 146 PTPIHDLSASDFLKKLDSQISLSKKAAAQKLK 177
P ++ L++ D L+ L +A +K +
Sbjct: 1490 PPTLYPLASPDLQALLEHYSELLVQAVRRKAR 1521
>gi|145580610 WD repeat domain 62 isoform 2 [Homo sapiens]
Length = 1518
Score = 33.1 bits (74), Expect = 0.20
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 89 EPRDLFNGLDSEEEKD-GEEKVHPS--NSEVWPHSTERKKQETGAGRANGEVLPTPGQET 145
E DL+ L S + D G+++ ++ +W HS + G A + LP+PG +
Sbjct: 1425 EALDLYRVLVSSGQVDTGQQQARTELVSTFLWIHSQLEAECLVGTSVAPAQALPSPGPPS 1484
Query: 146 PTPIHDLSASDFLKKLDSQISLSKKAAAQKLK 177
P ++ L++ D L+ L +A +K +
Sbjct: 1485 PPTLYPLASPDLQALLEHYSELLVQAVRRKAR 1516
>gi|7657550 sentrin/SUMO-specific protease 1 [Homo sapiens]
Length = 643
Score = 32.7 bits (73), Expect = 0.26
Identities = 33/143 (23%), Positives = 57/143 (39%), Gaps = 29/143 (20%)
Query: 103 KDGEEKVHPSNSEVWPHSTERKKQETGAGRANGEV--LPTPGQETPTP------------ 148
KD HP + PH + + V L +TPTP
Sbjct: 284 KDSGTLHHPHHHHSVPHQPDNLAASNTQSEGSDSVILLKVKDSQTPTPSSTFFQAELWIK 343
Query: 149 ----IHDLSASDFLKKLDSQISLSKKAAAQKLKKGENGVPGEDAGLHLSSPWMQQRAVLG 204
++D A + L++++ Q +L+ + Q+L++ E+ V + LHL P ++
Sbjct: 344 ELTSVYDSRARERLRQIEEQKALALQLQNQRLQEREHSV-HDSVELHLRVPLEKE----- 397
Query: 205 PVPLTRTSRTR----TLRDQEDE 223
+P+T T+ L D EDE
Sbjct: 398 -IPVTVVQETQKKGHKLTDSEDE 419
>gi|21361766 zinc finger protein 692 isoform 2 [Homo sapiens]
Length = 519
Score = 32.7 bits (73), Expect = 0.26
Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 22/135 (16%)
Query: 98 DSEEEKDGEEKVHPSNSEVWPHSTERKKQETGAGR----------ANGEVLPTPGQ-ETP 146
+ EE+ D +E+ S++ +W +S+ E A R GE P P +P
Sbjct: 193 EEEEDNDEDEEEMLSDASLWTYSSSPDDSEPDAPRLLPSPVTCTPKEGETPPAPAALSSP 252
Query: 147 TPIHDLSASDFLK--------KLDSQISLSKKAAAQKLKKGENGVPGEDAGLHLSSPWMQ 198
+ LSAS ++ Q+S + +AA Q G + A + W +
Sbjct: 253 LAVPALSASSLSSRAPPPAEVRVQPQLSRTPQAAQQTEALASTGSQAQSAP---TPAWDE 309
Query: 199 QRAVLGPVPLTRTSR 213
A +GP + + ++
Sbjct: 310 DTAQIGPKRIRKAAK 324
>gi|209862873 zinc finger protein 692 isoform 1 [Homo sapiens]
Length = 524
Score = 32.7 bits (73), Expect = 0.26
Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 22/135 (16%)
Query: 98 DSEEEKDGEEKVHPSNSEVWPHSTERKKQETGAGR----------ANGEVLPTPGQ-ETP 146
+ EE+ D +E+ S++ +W +S+ E A R GE P P +P
Sbjct: 198 EEEEDNDEDEEEMLSDASLWTYSSSPDDSEPDAPRLLPSPVTCTPKEGETPPAPAALSSP 257
Query: 147 TPIHDLSASDFLK--------KLDSQISLSKKAAAQKLKKGENGVPGEDAGLHLSSPWMQ 198
+ LSAS ++ Q+S + +AA Q G + A + W +
Sbjct: 258 LAVPALSASSLSSRAPPPAEVRVQPQLSRTPQAAQQTEALASTGSQAQSAP---TPAWDE 314
Query: 199 QRAVLGPVPLTRTSR 213
A +GP + + ++
Sbjct: 315 DTAQIGPKRIRKAAK 329
>gi|4502425 bone morphogenetic protein 6 preproprotein [Homo
sapiens]
Length = 513
Score = 32.3 bits (72), Expect = 0.34
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 92 DLFNGLDSEEEKDGEEKVHPSNSEVWPH----STERKKQETGAGR-ANGEVLPTPGQET- 145
DL+N L ++ ++DG + S WPH S++R++ GA N + L PG +
Sbjct: 138 DLYNALSADNDEDGASEGERQQS--WPHEAASSSQRRQPPPGAAHPLNRKSLLAPGSGSG 195
Query: 146 -PTPIHDLSASDFLKKLDSQIS 166
+P+ S FL D +S
Sbjct: 196 GASPLTSAQDSAFLNDADMVMS 217
>gi|194306543 oxidation resistance 1 isoform 2 [Homo sapiens]
Length = 839
Score = 32.3 bits (72), Expect = 0.34
Identities = 25/113 (22%), Positives = 52/113 (46%), Gaps = 13/113 (11%)
Query: 40 LEHQLEPGDTLAGLALKYGVTMEQIKRANRLYTNDSIFLKKTLYIPILTEPRDLFNGLDS 99
+E+ +E D+L +ALK+ T ++ + N+L++ ++ + LY+P +P + + ++S
Sbjct: 91 IEYTVESRDSLNSIALKFDTTPNELVQLNKLFSR-AVVTGQVLYVP---DP-EYVSSVES 145
Query: 100 EEEKDGEEKVHPSNSEVW--------PHSTERKKQETGAGRANGEVLPTPGQE 144
+ P++SE H TE T G V+ + +E
Sbjct: 146 SPSLSPVSPLSPTSSEAEFDKTTNPDVHPTEATPSSTFTGIRPARVVSSTSEE 198
>gi|194306541 oxidation resistance 1 isoform 1 [Homo sapiens]
Length = 846
Score = 32.3 bits (72), Expect = 0.34
Identities = 25/113 (22%), Positives = 52/113 (46%), Gaps = 13/113 (11%)
Query: 40 LEHQLEPGDTLAGLALKYGVTMEQIKRANRLYTNDSIFLKKTLYIPILTEPRDLFNGLDS 99
+E+ +E D+L +ALK+ T ++ + N+L++ ++ + LY+P +P + + ++S
Sbjct: 98 IEYTVESRDSLNSIALKFDTTPNELVQLNKLFSR-AVVTGQVLYVP---DP-EYVSSVES 152
Query: 100 EEEKDGEEKVHPSNSEVW--------PHSTERKKQETGAGRANGEVLPTPGQE 144
+ P++SE H TE T G V+ + +E
Sbjct: 153 SPSLSPVSPLSPTSSEAEFDKTTNPDVHPTEATPSSTFTGIRPARVVSSTSEE 205
>gi|222418633 family with sequence similarity 71, member B [Homo
sapiens]
Length = 605
Score = 32.0 bits (71), Expect = 0.45
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 10/102 (9%)
Query: 93 LFNGLDSE---EEKDGEEKVHPSNSEVWPHSTERKKQETGAGRANGEVLPTPGQETPTPI 149
L + L SE E+DG +KV ++EVW + ER++++ G+
Sbjct: 398 LISTLQSEGYMSERDGSQKVSQPSAEVWNENKERREKKDRHPSRKSSHHRKAGES----- 452
Query: 150 HDLSASDFLKKLDSQISLS--KKAAAQKLKKGENGVPGEDAG 189
H A D +K S S S K K +KG + V G+ G
Sbjct: 453 HRRRAGDKNQKASSHRSASGHKNTRDDKKEKGYSNVRGKRHG 494
>gi|157694494 MYB binding protein 1a isoform 1 [Homo sapiens]
Length = 1332
Score = 31.6 bits (70), Expect = 0.58
Identities = 28/117 (23%), Positives = 43/117 (36%), Gaps = 3/117 (2%)
Query: 99 SEEEKDGEEKVHPSNSEVWPHSTERKKQETGAGRANGEVLPTPGQETPTPIHDLSASDFL 158
SE+ E+ + P S RKK+ + + TP ++P P +
Sbjct: 1186 SEDGTPAEDGTPAATGGSQPPSMGRKKRNRTKAKVPAQANGTPTTKSPAPGAPTRSPSTP 1245
Query: 159 KKLDSQISLSKKAAAQKLKKGENGVPGEDAGLHLSSPWMQQRAVLGPVPLTRTSRTR 215
K L KK G G P E AG + ++ VLG PL+ +R +
Sbjct: 1246 AKSPK---LQKKNQKPSQVNGAPGSPTEPAGQKQHQKALPKKGVLGKSPLSALARKK 1299
>gi|157694492 MYB binding protein 1a isoform 2 [Homo sapiens]
Length = 1328
Score = 31.6 bits (70), Expect = 0.58
Identities = 28/117 (23%), Positives = 43/117 (36%), Gaps = 3/117 (2%)
Query: 99 SEEEKDGEEKVHPSNSEVWPHSTERKKQETGAGRANGEVLPTPGQETPTPIHDLSASDFL 158
SE+ E+ + P S RKK+ + + TP ++P P +
Sbjct: 1186 SEDGTPAEDGTPAATGGSQPPSMGRKKRNRTKAKVPAQANGTPTTKSPAPGAPTRSPSTP 1245
Query: 159 KKLDSQISLSKKAAAQKLKKGENGVPGEDAGLHLSSPWMQQRAVLGPVPLTRTSRTR 215
K L KK G G P E AG + ++ VLG PL+ +R +
Sbjct: 1246 AKSPK---LQKKNQKPSQVNGAPGSPTEPAGQKQHQKALPKKGVLGKSPLSALARKK 1299
>gi|168229174 RNA binding motif protein 27 [Homo sapiens]
Length = 1060
Score = 30.8 bits (68), Expect = 0.99
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 16/75 (21%)
Query: 74 DSIFLKKTLYI--PILTEPRDLFNGLD----------SEEEKDGEEKVHPSNSEVWPHST 121
+S++ K L + P+ EP+ L + +EEE+DG +K +PS + S+
Sbjct: 70 ESLYTKNYLPLLEPVKPEPKPLVQEKEEIKEEVFQEPAEEERDGRKKKYPSPQKTRSESS 129
Query: 122 ER----KKQETGAGR 132
ER KK+E G R
Sbjct: 130 ERRTREKKREDGKWR 144
>gi|66346693 FAT tumor suppressor 1 precursor [Homo sapiens]
Length = 4588
Score = 30.4 bits (67), Expect = 1.3
Identities = 33/152 (21%), Positives = 54/152 (35%), Gaps = 10/152 (6%)
Query: 32 CSPVRERRLEHQLEPGDTLAGLALKYGVTMEQIKRANRLYTND---SIFLKKTLYIPILT 88
C + R+ +HQ EP D G A + + N+ +D + ++ Y P +
Sbjct: 4202 CRKMISRKKKHQAEPKDKHLGPATAFLQRPYFDSKLNKNIYSDIPPQVPVRPISYTPSI- 4260
Query: 89 EPRDLFNGLDSEEEKDGEEKVHPSNSEVWPHSTERKKQETGAGRANGEVLPTPGQETPTP 148
P D N LD + HP S P S ++ + P P +P+
Sbjct: 4261 -PSDSRNNLDRNSFEGSAIPEHPEFSTFNPESVHGHRKAVAVCSVAPNLPPPPPSNSPSD 4319
Query: 149 IHDLSASDF-----LKKLDSQISLSKKAAAQK 175
+ + K +D LSKK +K
Sbjct: 4320 SDSIQKPSWDFDYDTKVVDLDPCLSKKPLEEK 4351
>gi|170932526 nuclear receptor coactivator 7 isoform 2 [Homo
sapiens]
Length = 931
Score = 30.4 bits (67), Expect = 1.3
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 40 LEHQLEPGDTLAGLALKYGVTMEQIKRANRLYTNDSIFLKKTLYIPILTEP 90
+E+ DTL +ALK+ +T ++ N+L+T+ +I + L++P P
Sbjct: 114 MEYTAGNQDTLNSIALKFNITPNKLVELNKLFTH-TIVPGQVLFVPDANSP 163
>gi|170932524 nuclear receptor coactivator 7 isoform 1 [Homo
sapiens]
Length = 942
Score = 30.4 bits (67), Expect = 1.3
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 40 LEHQLEPGDTLAGLALKYGVTMEQIKRANRLYTNDSIFLKKTLYIPILTEP 90
+E+ DTL +ALK+ +T ++ N+L+T+ +I + L++P P
Sbjct: 114 MEYTAGNQDTLNSIALKFNITPNKLVELNKLFTH-TIVPGQVLFVPDANSP 163
>gi|4885073 activating transcription factor 1 [Homo sapiens]
Length = 271
Score = 30.0 bits (66), Expect = 1.7
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 89 EPRDLFNGLDSEEEKDGEEKVHPSNSEVWPH-STERKKQETGAGRANGEVLPTPGQETPT 147
E +D + + S ++ G PS ++ S+E + G G +G PT
Sbjct: 40 ESQDSSDSIGSSQKAHGILARRPSYRKILKDLSSEDTRGRKGDGENSGVSAAVTSMSVPT 99
Query: 148 PIHDLSASDFLKKLDSQISLSKKAAAQKLKKGENGVPG 185
PI+ S+ + I+++ A Q G +GV G
Sbjct: 100 PIYQTSSGQY-------IAIAPNGALQLASPGTDGVQG 130
>gi|110347463 human immunodeficiency virus type I enhancer binding
protein 2 [Homo sapiens]
Length = 2446
Score = 30.0 bits (66), Expect = 1.7
Identities = 36/142 (25%), Positives = 58/142 (40%), Gaps = 16/142 (11%)
Query: 57 YGVTMEQIKRANRLYTNDSIFLKKTLYIPILTEPRDLFNGLDSEEEKDGEEKVHPSNSEV 116
YG +E++ TN I KK L P +P+ + G SE KDG + S S +
Sbjct: 1466 YGQIVEELSAVE--LTNSDI--KKDLSRP--QKPQLVRQGCASEP-KDGLQSGSSSFSSL 1518
Query: 117 WPHSTERKKQETGAGRA---------NGEVLPTPGQETPTPIHDLSASDFLKKLDSQISL 167
P S++ + + R +G P PGQ++ P +SD L ++ +
Sbjct: 1519 SPSSSQDYPSVSPSSREPFLPSKEMLSGSRAPLPGQKSSGPSESKESSDELDIDETASDM 1578
Query: 168 SKKAAAQKLKKGENGVPGEDAG 189
S + L G+ + E G
Sbjct: 1579 SMSPQSSSLPAGDGQLEEEGKG 1600
>gi|94536805 splicing factor YT521-B isoform 2 [Homo sapiens]
Length = 709
Score = 30.0 bits (66), Expect = 1.7
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 98 DSEEEKDGE--------EKVHPSNSEVW-PHSTERKKQETGAGRANGEVLPTPGQETPTP 148
DS EEKDGE +V + E++ P S + K ++ G+ R + + T +
Sbjct: 4 DSREEKDGELNVLDDILTEVPEQDDELYNPESEQDKNEKKGSKRKSDRMESTDTKRQKPS 63
Query: 149 IHDLSASDFLKKLDSQISLSKKAAAQKLK 177
+H S K L S +S +K+ + K K
Sbjct: 64 VH--SRQLVSKPLSSSVSNNKRIVSTKGK 90
>gi|30181233 leucine-rich repeats and calponin homology (CH) domain
containing 4 [Homo sapiens]
Length = 683
Score = 30.0 bits (66), Expect = 1.7
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 101 EEKDGEEKVHPSNSEVWPHSTERKKQETGA-GRANGEVLPTPG 142
EE GEE+ P ++W R++Q++GA G + L PG
Sbjct: 395 EEPAGEERRRPDTLQLWQERERRQQQQSGAWGAPRKDSLLKPG 437
>gi|72534750 splicing factor YT521-B isoform 1 [Homo sapiens]
Length = 727
Score = 30.0 bits (66), Expect = 1.7
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 98 DSEEEKDGE--------EKVHPSNSEVW-PHSTERKKQETGAGRANGEVLPTPGQETPTP 148
DS EEKDGE +V + E++ P S + K ++ G+ R + + T +
Sbjct: 4 DSREEKDGELNVLDDILTEVPEQDDELYNPESEQDKNEKKGSKRKSDRMESTDTKRQKPS 63
Query: 149 IHDLSASDFLKKLDSQISLSKKAAAQKLK 177
+H S K L S +S +K+ + K K
Sbjct: 64 VH--SRQLVSKPLSSSVSNNKRIVSTKGK 90
>gi|100816397 MYST histone acetyltransferase (monocytic leukemia) 4
[Homo sapiens]
Length = 2073
Score = 29.6 bits (65), Expect = 2.2
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 14/117 (11%)
Query: 61 MEQIKRANRLYTNDSIFLKKTLYIPILTEPRDLFNGLDSEEEKDGEEKVHP--SNSEVWP 118
ME++K +R D L+ T PIL + N SEEE++ E++ + W
Sbjct: 968 MEKLKTCSRANELDPDSLRWT---PIL-----ISNAAVSEEEREAEKEAERLMEQASCW- 1018
Query: 119 HSTERKKQETGAGRANGEVLPTPGQETPTPIHDLSASDFLKKLDSQISLSKKAAAQK 175
E+++QE + RAN P Q +H + + + LSK+++ ++
Sbjct: 1019 ---EKEEQEILSTRANSRQSPAKVQSKNKYLHSPESRPVTGERGQLLELSKESSEEE 1072
>gi|116812573 CWC15 homolog [Homo sapiens]
Length = 229
Score = 29.3 bits (64), Expect = 2.9
Identities = 35/151 (23%), Positives = 53/151 (35%), Gaps = 23/151 (15%)
Query: 2 ASPSRQPPPGGSGLLQGSRAR----------------SYGSLVQSACSPVRERRLEHQLE 45
A P+ +P GG G +G ++ Y Q A VR R +LE
Sbjct: 5 ARPTFEPARGGRGKGEGDLSQLSKQYSSRDLPSHTKIKYRQTTQDAPEEVRNRDFRRELE 64
Query: 46 PGDTLAGLALKYGVTMEQIKRANRLYTNDSIFLKKTLYIPILTEPRDLFNGLDSEEEKDG 105
+ A + R R +T S KK I D + L EE++D
Sbjct: 65 ERERAAARE-------KNRDRPTREHTTSSSVSKKPRLDQIPAANLDADDPLTDEEDEDF 117
Query: 106 EEKVHPSNSEVWPHSTERKKQETGAGRANGE 136
EE+ ++ E+ K+E +A E
Sbjct: 118 EEESDDDDTAALLAELEKIKKERAEEQARKE 148
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 29.3 bits (64), Expect = 2.9
Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 11/93 (11%)
Query: 96 GLDSEEEKDGEEKVHPSNSEVWPHSTERKKQETGAGRANGEVLPTP--GQETPT-PIHDL 152
GL E G+E S+ + + QE AGRA+ P P G E PT P L
Sbjct: 1398 GLPEEGSVHGQELSEASSPDGKGSQEDDPVQEEEAGRASASAEPCPAEGTEEPTEPPSHL 1457
Query: 153 SASDFLKKLDSQISLSKKAAAQKLKKGENGVPG 185
S +D S S++ + +L+ G PG
Sbjct: 1458 SETD--------PSASERQSGSQLEPGLEKPPG 1482
>gi|221219020 NYD-SP11 protein [Homo sapiens]
Length = 2873
Score = 28.9 bits (63), Expect = 3.8
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 97 LDSEEEKDGEEKVHPSNSEVWPHSTERKKQETG 129
L SEEE++ EE+ EV ERK++E G
Sbjct: 2243 LSSEEEEEREEEEEREEEEVREEEEERKEEEEG 2275
>gi|223633988 hypothetical protein LOC85379 [Homo sapiens]
Length = 1806
Score = 28.9 bits (63), Expect = 3.8
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 12/81 (14%)
Query: 114 SEVWPHSTERKKQETGAGRANGEVLPTPGQET----PTPIHDLSASDFLKKLDSQISLSK 169
S ++ S + +K GA G+V PTP ++T P P+ + D + +++ +L +
Sbjct: 244 SAIFTESIQPQKPGPGAAATVGKVPPTPPEKTWVRKPRPL----SMDLTARFENKEALLR 299
Query: 170 KAAAQKLKKGENGVPGEDAGL 190
K A +G G+ AGL
Sbjct: 300 KVA----DEGSGPTAGDMAGL 316
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.130 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,414,719
Number of Sequences: 37866
Number of extensions: 522523
Number of successful extensions: 1819
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1778
Number of HSP's gapped (non-prelim): 72
length of query: 227
length of database: 18,247,518
effective HSP length: 99
effective length of query: 128
effective length of database: 14,498,784
effective search space: 1855844352
effective search space used: 1855844352
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.