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Search of human proteins with 47059040
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|47059040 homeobox containing 1 [Homo sapiens]
(420 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|209180434 homeobox containing 1 [Homo sapiens] 842 0.0
gi|47059040 homeobox containing 1 [Homo sapiens] 842 0.0
gi|134304844 hepatic nuclear factor-1-alpha [Homo sapiens] 75 1e-13
gi|4507397 transcription factor 2 [Homo sapiens] 73 6e-13
gi|188219638 paired box 3 isoform PAX3i [Homo sapiens] 47 3e-05
gi|31563348 paired box 3 isoform PAX3g [Homo sapiens] 47 3e-05
gi|31563346 paired box 3 isoform PAX3h [Homo sapiens] 47 3e-05
gi|31563344 paired box 3 isoform PAX3e [Homo sapiens] 47 3e-05
gi|31563342 paired box 3 isoform PAX3d [Homo sapiens] 47 3e-05
gi|31563340 paired box 3 isoform PAX3 [Homo sapiens] 47 3e-05
gi|4505623 pre-B-cell leukemia homeobox 1 [Homo sapiens] 43 5e-04
gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo sapiens] 43 5e-04
gi|12707577 paired mesoderm homeobox 1 isoform pmx-1b [Homo sapi... 43 5e-04
gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Ho... 43 5e-04
gi|122937223 NOBOX oogenesis homeobox [Homo sapiens] 43 6e-04
gi|21361183 paired-like homeodomain transcription factor 2 isofo... 41 0.002
gi|24234711 paired-like homeodomain transcription factor 2 isofo... 41 0.002
gi|24234708 paired-like homeodomain transcription factor 2 isofo... 41 0.002
gi|24497589 aristaless related homeobox [Homo sapiens] 41 0.002
gi|4885363 goosecoid homeobox 2 [Homo sapiens] 40 0.004
gi|7524359 paired box 7 isoform 2 [Homo sapiens] 40 0.005
gi|4505619 paired box 7 isoform 1 [Homo sapiens] 39 0.007
gi|207029223 paired box 7 isoform 3 [Homo sapiens] 39 0.007
gi|126116581 retina and anterior neural fold homeobox [Homo sapi... 39 0.009
gi|11119420 orthodenticle homeobox 2 isoform a [Homo sapiens] 39 0.009
gi|12707580 paired-like homeobox 2b [Homo sapiens] 38 0.015
gi|154146223 splicing factor, arginine/serine-rich 130 [Homo sap... 38 0.020
gi|154146193 splicing factor, arginine/serine-rich 130 [Homo sap... 38 0.020
gi|4826912 paired-like homeodomain 3 [Homo sapiens] 37 0.026
gi|152963644 paired-like homeodomain transcription factor 1 [Hom... 37 0.026
>gi|209180434 homeobox containing 1 [Homo sapiens]
Length = 420
Score = 842 bits (2176), Expect = 0.0
Identities = 420/420 (100%), Positives = 420/420 (100%)
Query: 1 MLSSFPVVLLETMSHYTDEPRFTIEQIDLLQRLRRTGMTKHEILHALETLDRLDQEHSDK 60
MLSSFPVVLLETMSHYTDEPRFTIEQIDLLQRLRRTGMTKHEILHALETLDRLDQEHSDK
Sbjct: 1 MLSSFPVVLLETMSHYTDEPRFTIEQIDLLQRLRRTGMTKHEILHALETLDRLDQEHSDK 60
Query: 61 FGRRSSYGGSSYGNSTNNVPASSSTATASTQTQHSGMSPSPSNSYDTSPQPCTTNQNGRE 120
FGRRSSYGGSSYGNSTNNVPASSSTATASTQTQHSGMSPSPSNSYDTSPQPCTTNQNGRE
Sbjct: 61 FGRRSSYGGSSYGNSTNNVPASSSTATASTQTQHSGMSPSPSNSYDTSPQPCTTNQNGRE 120
Query: 121 NNERLSTSNGKMSPTRYHANSMGQRSYSFEASEEDLDVDDKVEELMRRDSSVIKEEIKAF 180
NNERLSTSNGKMSPTRYHANSMGQRSYSFEASEEDLDVDDKVEELMRRDSSVIKEEIKAF
Sbjct: 121 NNERLSTSNGKMSPTRYHANSMGQRSYSFEASEEDLDVDDKVEELMRRDSSVIKEEIKAF 180
Query: 181 LANRRISQAVVAQVTGISQSRISHWLLQQGSDLSEQKKRAFYRWYQLEKTNPGATLSMRP 240
LANRRISQAVVAQVTGISQSRISHWLLQQGSDLSEQKKRAFYRWYQLEKTNPGATLSMRP
Sbjct: 181 LANRRISQAVVAQVTGISQSRISHWLLQQGSDLSEQKKRAFYRWYQLEKTNPGATLSMRP 240
Query: 241 APIPIEDPEWRQTPPPVSATSGTFRLRRGSRFTWRKECLAVMESYFNENQYPDEAKREEI 300
APIPIEDPEWRQTPPPVSATSGTFRLRRGSRFTWRKECLAVMESYFNENQYPDEAKREEI
Sbjct: 241 APIPIEDPEWRQTPPPVSATSGTFRLRRGSRFTWRKECLAVMESYFNENQYPDEAKREEI 300
Query: 301 ANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANIEAAILESHGIDVQSPGG 360
ANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANIEAAILESHGIDVQSPGG
Sbjct: 301 ANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANIEAAILESHGIDVQSPGG 360
Query: 361 HSNSDDVDGNDYSEQDDSTSHSDHQDPISLAVEMAAVNHTILALARQGANEIKTEALDDD 420
HSNSDDVDGNDYSEQDDSTSHSDHQDPISLAVEMAAVNHTILALARQGANEIKTEALDDD
Sbjct: 361 HSNSDDVDGNDYSEQDDSTSHSDHQDPISLAVEMAAVNHTILALARQGANEIKTEALDDD 420
>gi|47059040 homeobox containing 1 [Homo sapiens]
Length = 420
Score = 842 bits (2176), Expect = 0.0
Identities = 420/420 (100%), Positives = 420/420 (100%)
Query: 1 MLSSFPVVLLETMSHYTDEPRFTIEQIDLLQRLRRTGMTKHEILHALETLDRLDQEHSDK 60
MLSSFPVVLLETMSHYTDEPRFTIEQIDLLQRLRRTGMTKHEILHALETLDRLDQEHSDK
Sbjct: 1 MLSSFPVVLLETMSHYTDEPRFTIEQIDLLQRLRRTGMTKHEILHALETLDRLDQEHSDK 60
Query: 61 FGRRSSYGGSSYGNSTNNVPASSSTATASTQTQHSGMSPSPSNSYDTSPQPCTTNQNGRE 120
FGRRSSYGGSSYGNSTNNVPASSSTATASTQTQHSGMSPSPSNSYDTSPQPCTTNQNGRE
Sbjct: 61 FGRRSSYGGSSYGNSTNNVPASSSTATASTQTQHSGMSPSPSNSYDTSPQPCTTNQNGRE 120
Query: 121 NNERLSTSNGKMSPTRYHANSMGQRSYSFEASEEDLDVDDKVEELMRRDSSVIKEEIKAF 180
NNERLSTSNGKMSPTRYHANSMGQRSYSFEASEEDLDVDDKVEELMRRDSSVIKEEIKAF
Sbjct: 121 NNERLSTSNGKMSPTRYHANSMGQRSYSFEASEEDLDVDDKVEELMRRDSSVIKEEIKAF 180
Query: 181 LANRRISQAVVAQVTGISQSRISHWLLQQGSDLSEQKKRAFYRWYQLEKTNPGATLSMRP 240
LANRRISQAVVAQVTGISQSRISHWLLQQGSDLSEQKKRAFYRWYQLEKTNPGATLSMRP
Sbjct: 181 LANRRISQAVVAQVTGISQSRISHWLLQQGSDLSEQKKRAFYRWYQLEKTNPGATLSMRP 240
Query: 241 APIPIEDPEWRQTPPPVSATSGTFRLRRGSRFTWRKECLAVMESYFNENQYPDEAKREEI 300
APIPIEDPEWRQTPPPVSATSGTFRLRRGSRFTWRKECLAVMESYFNENQYPDEAKREEI
Sbjct: 241 APIPIEDPEWRQTPPPVSATSGTFRLRRGSRFTWRKECLAVMESYFNENQYPDEAKREEI 300
Query: 301 ANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANIEAAILESHGIDVQSPGG 360
ANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANIEAAILESHGIDVQSPGG
Sbjct: 301 ANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANIEAAILESHGIDVQSPGG 360
Query: 361 HSNSDDVDGNDYSEQDDSTSHSDHQDPISLAVEMAAVNHTILALARQGANEIKTEALDDD 420
HSNSDDVDGNDYSEQDDSTSHSDHQDPISLAVEMAAVNHTILALARQGANEIKTEALDDD
Sbjct: 361 HSNSDDVDGNDYSEQDDSTSHSDHQDPISLAVEMAAVNHTILALARQGANEIKTEALDDD 420
>gi|134304844 hepatic nuclear factor-1-alpha [Homo sapiens]
Length = 631
Score = 75.1 bits (183), Expect = 1e-13
Identities = 52/182 (28%), Positives = 84/182 (46%), Gaps = 18/182 (9%)
Query: 162 VEELMRRDSSVIKEEIKAFLANRRISQAVVAQVTGISQSRISHWLLQQGSDLSEQKKRAF 221
VE L++ D + + +K++L I Q V TG++QS +S L +G+ + QK+ A
Sbjct: 104 VETLLQEDPWRVAKMVKSYLQQHNIPQREVVDTTGLNQSHLSQHL-NKGTPMKTQKRAAL 162
Query: 222 YRWYQLEKTNPGATLSMRPAPIPIEDPEWRQTPPPVSATSGTFRLRRGSRFTWRKECLAV 281
Y WY ++ + IE+P + P + R +RF W +
Sbjct: 163 YTWYVRKQREVAQQFTHAGQGGLIEEPTGDELPT---------KKGRRNRFKWGPASQQI 213
Query: 282 MESYFNENQYPDEAKREEIANACNAV--IQKPGKKLSDLER-----VTSLKVYNWFANRR 334
+ + + P + +RE + CN IQ+ G S + VT ++VYNWFANRR
Sbjct: 214 LFQAYERQKNPSKEERETLVEECNRAECIQR-GVSPSQAQGLGSNLVTEVRVYNWFANRR 272
Query: 335 KE 336
KE
Sbjct: 273 KE 274
>gi|4507397 transcription factor 2 [Homo sapiens]
Length = 557
Score = 72.8 bits (177), Expect = 6e-13
Identities = 96/392 (24%), Positives = 149/392 (38%), Gaps = 71/392 (18%)
Query: 21 RFTIEQIDLLQRLRRTGMTKHEILHALETLDRLDQEHSDKFGRRSSYGGSSYGNSTNNVP 80
+ T Q +LL L +G+TK ++ ALE L ++G +P
Sbjct: 4 KLTSLQQELLSALLSSGVTKEVLVQALEEL----------------LPSPNFGVKLETLP 47
Query: 81 ASSSTATASTQTQHSGMSPSPSNSYDTSPQPCTTNQNGRENNERLSTSNGKMSPTRYHAN 140
S SG P DT P T NG RLS G Y
Sbjct: 48 LSPG----------SGAEP------DTKPVFHTLT-NGHAKG-RLSGDEGSEDGDDYDTP 89
Query: 141 SMGQRSYSFEASEEDLDVDDKVEELMRRDSSVIKEEIKAFLANRRISQAVVAQVTGISQS 200
+ + + +EE + +V+ ++ D + IK ++ I Q V VTG++QS
Sbjct: 90 PILKELQALN-TEEAAEQRAEVDRMLSEDPWRAAKMIKGYMQQHNIPQREVVDVTGLNQS 148
Query: 201 RISHWLLQQGSDLSEQKKRAFYRWYQ------LEKTNPGATLSMRPAPIPIED------P 248
+S L +G+ + QK+ A Y WY L + N S +D P
Sbjct: 149 HLSQHL-NKGTPMKTQKRAALYTWYVRKQREILRQFNQTVQSSGNMTDKSSQDQLLFLFP 207
Query: 249 EWRQTP-----PPVSATSGTFRLRRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANA 303
E+ Q + + T + R +RF W ++ ++ + P + +RE +
Sbjct: 208 EFSQQSHGPGQSDDACSEPTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEE 267
Query: 304 CNAV--IQK---PGKKLS-DLERVTSLKVYNWFANRRKEIKRRANIEAAI---------- 347
CN +Q+ P K VT ++VYNWFANRRKE R +
Sbjct: 268 CNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEAFRQKLAMDAYSSNQTHSLN 327
Query: 348 -LESHGIDVQSPGGHSNSDDVDGNDYSEQDDS 378
L SHG P S + + G YS+Q ++
Sbjct: 328 PLLSHGSPHHQPSS-SPPNKLSGVRYSQQGNN 358
>gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]
Length = 483
Score = 47.0 bits (110), Expect = 3e-05
Identities = 51/206 (24%), Positives = 83/206 (40%), Gaps = 27/206 (13%)
Query: 157 DVDDKVEELMRRDSSVIKEEIKAFLANRRI-SQAVVAQVTGISQSRISHWLLQQGSDLSE 215
DV+ K+EE R + + EI+ L + + V V+ IS+ S + + +
Sbjct: 112 DVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADL 171
Query: 216 QKKRAFYRWYQLEKTNPGATLSMRPAPIPIEDPEWRQTPP-PVSATSGTFRLRRGSRFTW 274
++K A + + + G AP E + P P+ R +R SR T+
Sbjct: 172 ERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLK------RKQRRSRTTF 225
Query: 275 RKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRR 334
E L +E F YPD REE+A ++T +V WF+NRR
Sbjct: 226 TAEQLEELERAFERTHYPDIYTREELAQRA---------------KLTEARVQVWFSNRR 270
Query: 335 KEIKRRANIEAAILESHGIDVQSPGG 360
+++A + +H I PGG
Sbjct: 271 ARWRKQAGANQLMAFNHLI----PGG 292
>gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]
Length = 403
Score = 47.0 bits (110), Expect = 3e-05
Identities = 51/206 (24%), Positives = 83/206 (40%), Gaps = 27/206 (13%)
Query: 157 DVDDKVEELMRRDSSVIKEEIKAFLANRRI-SQAVVAQVTGISQSRISHWLLQQGSDLSE 215
DV+ K+EE R + + EI+ L + + V V+ IS+ S + + +
Sbjct: 113 DVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADL 172
Query: 216 QKKRAFYRWYQLEKTNPGATLSMRPAPIPIEDPEWRQTPP-PVSATSGTFRLRRGSRFTW 274
++K A + + + G AP E + P P+ R +R SR T+
Sbjct: 173 ERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLK------RKQRRSRTTF 226
Query: 275 RKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRR 334
E L +E F YPD REE+A ++T +V WF+NRR
Sbjct: 227 TAEQLEELERAFERTHYPDIYTREELAQRA---------------KLTEARVQVWFSNRR 271
Query: 335 KEIKRRANIEAAILESHGIDVQSPGG 360
+++A + +H I PGG
Sbjct: 272 ARWRKQAGANQLMAFNHLI----PGG 293
>gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]
Length = 407
Score = 47.0 bits (110), Expect = 3e-05
Identities = 51/206 (24%), Positives = 83/206 (40%), Gaps = 27/206 (13%)
Query: 157 DVDDKVEELMRRDSSVIKEEIKAFLANRRI-SQAVVAQVTGISQSRISHWLLQQGSDLSE 215
DV+ K+EE R + + EI+ L + + V V+ IS+ S + + +
Sbjct: 113 DVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADL 172
Query: 216 QKKRAFYRWYQLEKTNPGATLSMRPAPIPIEDPEWRQTPP-PVSATSGTFRLRRGSRFTW 274
++K A + + + G AP E + P P+ R +R SR T+
Sbjct: 173 ERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLK------RKQRRSRTTF 226
Query: 275 RKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRR 334
E L +E F YPD REE+A ++T +V WF+NRR
Sbjct: 227 TAEQLEELERAFERTHYPDIYTREELAQRA---------------KLTEARVQVWFSNRR 271
Query: 335 KEIKRRANIEAAILESHGIDVQSPGG 360
+++A + +H I PGG
Sbjct: 272 ARWRKQAGANQLMAFNHLI----PGG 293
>gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]
Length = 505
Score = 47.0 bits (110), Expect = 3e-05
Identities = 51/206 (24%), Positives = 83/206 (40%), Gaps = 27/206 (13%)
Query: 157 DVDDKVEELMRRDSSVIKEEIKAFLANRRI-SQAVVAQVTGISQSRISHWLLQQGSDLSE 215
DV+ K+EE R + + EI+ L + + V V+ IS+ S + + +
Sbjct: 113 DVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADL 172
Query: 216 QKKRAFYRWYQLEKTNPGATLSMRPAPIPIEDPEWRQTPP-PVSATSGTFRLRRGSRFTW 274
++K A + + + G AP E + P P+ R +R SR T+
Sbjct: 173 ERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLK------RKQRRSRTTF 226
Query: 275 RKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRR 334
E L +E F YPD REE+A ++T +V WF+NRR
Sbjct: 227 TAEQLEELERAFERTHYPDIYTREELAQRA---------------KLTEARVQVWFSNRR 271
Query: 335 KEIKRRANIEAAILESHGIDVQSPGG 360
+++A + +H I PGG
Sbjct: 272 ARWRKQAGANQLMAFNHLI----PGG 293
>gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]
Length = 484
Score = 47.0 bits (110), Expect = 3e-05
Identities = 51/206 (24%), Positives = 83/206 (40%), Gaps = 27/206 (13%)
Query: 157 DVDDKVEELMRRDSSVIKEEIKAFLANRRI-SQAVVAQVTGISQSRISHWLLQQGSDLSE 215
DV+ K+EE R + + EI+ L + + V V+ IS+ S + + +
Sbjct: 113 DVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADL 172
Query: 216 QKKRAFYRWYQLEKTNPGATLSMRPAPIPIEDPEWRQTPP-PVSATSGTFRLRRGSRFTW 274
++K A + + + G AP E + P P+ R +R SR T+
Sbjct: 173 ERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLK------RKQRRSRTTF 226
Query: 275 RKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRR 334
E L +E F YPD REE+A ++T +V WF+NRR
Sbjct: 227 TAEQLEELERAFERTHYPDIYTREELAQRA---------------KLTEARVQVWFSNRR 271
Query: 335 KEIKRRANIEAAILESHGIDVQSPGG 360
+++A + +H I PGG
Sbjct: 272 ARWRKQAGANQLMAFNHLI----PGG 293
>gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]
Length = 479
Score = 47.0 bits (110), Expect = 3e-05
Identities = 51/206 (24%), Positives = 83/206 (40%), Gaps = 27/206 (13%)
Query: 157 DVDDKVEELMRRDSSVIKEEIKAFLANRRI-SQAVVAQVTGISQSRISHWLLQQGSDLSE 215
DV+ K+EE R + + EI+ L + + V V+ IS+ S + + +
Sbjct: 113 DVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADL 172
Query: 216 QKKRAFYRWYQLEKTNPGATLSMRPAPIPIEDPEWRQTPP-PVSATSGTFRLRRGSRFTW 274
++K A + + + G AP E + P P+ R +R SR T+
Sbjct: 173 ERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLK------RKQRRSRTTF 226
Query: 275 RKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRR 334
E L +E F YPD REE+A ++T +V WF+NRR
Sbjct: 227 TAEQLEELERAFERTHYPDIYTREELAQRA---------------KLTEARVQVWFSNRR 271
Query: 335 KEIKRRANIEAAILESHGIDVQSPGG 360
+++A + +H I PGG
Sbjct: 272 ARWRKQAGANQLMAFNHLI----PGG 293
>gi|4505623 pre-B-cell leukemia homeobox 1 [Homo sapiens]
Length = 430
Score = 43.1 bits (100), Expect = 5e-04
Identities = 39/153 (25%), Positives = 60/153 (39%), Gaps = 30/153 (19%)
Query: 268 RGSRFTWRKECLAVMESYFNE---NQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSL 324
R R + K+ ++ YF N YP E +EE+A C +T
Sbjct: 234 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCG---------------ITVS 278
Query: 325 KVYNWFANRRKEIKR-------RANIEAAILESHGIDVQSPGGHSNSDDVDGNDYSEQDD 377
+V NWF N+R K+ ANI AA +V + G +NS + S
Sbjct: 279 QVSNWFGNKRIRYKKNIGKFQEEANIYAAKTAVTATNVSAHGSQANSPSTPNSAGSSSSF 338
Query: 378 STSHSDHQDPISLAVEMAAVNHTILALARQGAN 410
+ S+S L + + ++N A+ GAN
Sbjct: 339 NMSNSG-----DLFMSVQSLNGDSYQGAQVGAN 366
>gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo sapiens]
Length = 217
Score = 43.1 bits (100), Expect = 5e-04
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 20/96 (20%)
Query: 265 RLRRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSL 324
R +R +R T+ L +E F YPD RE++A N +T
Sbjct: 92 RKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVN---------------LTEA 136
Query: 325 KVYNWFANRRKEIKRR-----ANIEAAILESHGIDV 355
+V WF NRR + +R AN A++L+S+ DV
Sbjct: 137 RVQVWFQNRRAKFRRNERAMLANKNASLLKSYSGDV 172
>gi|12707577 paired mesoderm homeobox 1 isoform pmx-1b [Homo
sapiens]
Length = 245
Score = 43.1 bits (100), Expect = 5e-04
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 20/96 (20%)
Query: 265 RLRRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSL 324
R +R +R T+ L +E F YPD RE++A N +T
Sbjct: 92 RKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVN---------------LTEA 136
Query: 325 KVYNWFANRRKEIKRR-----ANIEAAILESHGIDV 355
+V WF NRR + +R AN A++L+S+ DV
Sbjct: 137 RVQVWFQNRRAKFRRNERAMLANKNASLLKSYSGDV 172
>gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Homo
sapiens]
Length = 406
Score = 43.1 bits (100), Expect = 5e-04
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 22/102 (21%)
Query: 242 PIPIEDPEWRQTPPPVSATSGTFRLRRGSRFTWRKECLAVMESYFNENQYPDEAKREEIA 301
P P E P+ + P P + RR + FT + L +E++F+E+QYPD RE +A
Sbjct: 121 PQPAEGPQTAEGPQPPER-----KRRRRTAFTQFQ--LQELENFFDESQYPDVVARERLA 173
Query: 302 NACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 343
N +T +V WF NRR + KR +
Sbjct: 174 ARLN---------------LTEDRVQVWFQNRRAKWKRNQRV 200
>gi|122937223 NOBOX oogenesis homeobox [Homo sapiens]
Length = 490
Score = 42.7 bits (99), Expect = 6e-04
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 22/111 (19%)
Query: 246 EDPEWRQTPPPVSATSGTFRLRRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACN 305
++ + +Q PP V T ++R+ +R +R + L +E F E+ YPD KR EIA
Sbjct: 256 QNRDHKQGPPEV-----TCQIRKKTRTLYRSDQLEELEKIFQEDHYPDSDKRREIAQTVG 310
Query: 306 AVIQK-----------------PGKKLSDLERVTSLKVYNWFANRRKEIKR 339
Q+ P + +L+ S + WF NRR + ++
Sbjct: 311 VTPQRIMVKGAGSLVAGWSGGGPTIETLELQSERSAVAWVWFQNRRAKWRK 361
>gi|21361183 paired-like homeodomain transcription factor 2 isoform
c [Homo sapiens]
Length = 324
Score = 40.8 bits (94), Expect = 0.002
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 15/101 (14%)
Query: 267 RRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKV 326
+R R + + L +E+ F N+YPD + REEIA N +T +V
Sbjct: 92 QRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTN---------------LTEARV 136
Query: 327 YNWFANRRKEIKRRANIEAAILESHGIDVQSPGGHSNSDDV 367
WF NRR + ++R + A L +G Q G DD+
Sbjct: 137 RVWFKNRRAKWRKRERNQQAELCKNGFGPQFNGLMQPYDDM 177
>gi|24234711 paired-like homeodomain transcription factor 2 isoform
a [Homo sapiens]
Length = 271
Score = 40.8 bits (94), Expect = 0.002
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 15/101 (14%)
Query: 267 RRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKV 326
+R R + + L +E+ F N+YPD + REEIA N +T +V
Sbjct: 39 QRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTN---------------LTEARV 83
Query: 327 YNWFANRRKEIKRRANIEAAILESHGIDVQSPGGHSNSDDV 367
WF NRR + ++R + A L +G Q G DD+
Sbjct: 84 RVWFKNRRAKWRKRERNQQAELCKNGFGPQFNGLMQPYDDM 124
>gi|24234708 paired-like homeodomain transcription factor 2 isoform
b [Homo sapiens]
Length = 317
Score = 40.8 bits (94), Expect = 0.002
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 15/101 (14%)
Query: 267 RRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKV 326
+R R + + L +E+ F N+YPD + REEIA N +T +V
Sbjct: 85 QRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTN---------------LTEARV 129
Query: 327 YNWFANRRKEIKRRANIEAAILESHGIDVQSPGGHSNSDDV 367
WF NRR + ++R + A L +G Q G DD+
Sbjct: 130 RVWFKNRRAKWRKRERNQQAELCKNGFGPQFNGLMQPYDDM 170
>gi|24497589 aristaless related homeobox [Homo sapiens]
Length = 562
Score = 40.8 bits (94), Expect = 0.002
Identities = 67/301 (22%), Positives = 110/301 (36%), Gaps = 67/301 (22%)
Query: 81 ASSSTATASTQTQHSGMSPSPSNSYDTS----------PQPCTTNQNG----RENNERLS 126
A+++ A A+ T +P S S S P P G ERL
Sbjct: 147 AAAAAAAAAWDTLKISQAPQVSISRSKSYRENGAPFVPPPPALDELGGPGGVTHPEERLG 206
Query: 127 TSNGKMSPTRYHANSMGQRSYSFEASEEDLDVDDKVEELMRRDSSVIKEEIKAFLAN-RR 185
+ G S + G E E++ D D++ E L + +++++ +A L RR
Sbjct: 207 VAGGPGSAPAAGGGT-GTEDDEEELLEDEEDEDEEEELLEDDEEELLEDDARALLKEPRR 265
Query: 186 ISQAVVAQVTGISQSRISHWLLQQGSDLSEQKKRAFYRWYQLEKTNPGATLSMRPAPIPI 245
A V + + ++ +G +LS P L + P
Sbjct: 266 CPVAATGAVAAAAAAAVA----TEGGELS-----------------PKEELLLHP----- 299
Query: 246 EDPEWRQTPPPVSATSGTF-------RLRRGSRFTWRKECLAVMESYFNENQYPDEAKRE 298
ED E + V ++G+ R +R R T+ L +E F + YPD RE
Sbjct: 300 EDAEGKDGEDSVCLSAGSDSEEGLLKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTRE 359
Query: 299 EIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANIEAAILESHGIDVQSP 358
E+A + +T +V WF NRR + ++R E A ++H + P
Sbjct: 360 ELAMRLD---------------LTEARVQVWFQNRRAKWRKR---EKAGAQTHPPGLPFP 401
Query: 359 G 359
G
Sbjct: 402 G 402
>gi|4885363 goosecoid homeobox 2 [Homo sapiens]
Length = 205
Score = 40.0 bits (92), Expect = 0.004
Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 18/116 (15%)
Query: 236 LSMRPA-PIPIEDPEWRQTPPPVSATSGTFRLRRGSRFTWRKECLAVMESYFNENQYPDE 294
L + PA P+ + P P + G+ R R R + +E L +E+ F +NQYPD
Sbjct: 94 LRLGPAVPLSLGAPAGGSGALPGAVGPGSQRRTRRHRTIFSEEQLQALEALFVQNQYPDV 153
Query: 295 AKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIK--RRANIEAAIL 348
+ RE +A R+ +V WF NRR + + +RA+ A +L
Sbjct: 154 STRERLAGRI---------------RLREERVEVWFKNRRAKWRHQKRASASARLL 194
>gi|7524359 paired box 7 isoform 2 [Homo sapiens]
Length = 518
Score = 39.7 bits (91), Expect = 0.005
Identities = 48/215 (22%), Positives = 87/215 (40%), Gaps = 49/215 (22%)
Query: 157 DVDDKVEELMRRDSSVIKEEIK-AFLANRRISQAVVAQVTGISQSRISHWLLQQGSDLSE 215
DV+ K+EE R + + EI+ L + ++ V V+ IS+ + ++ D ++
Sbjct: 113 DVEKKIEEYKRENPGMFSWEIRDRLLKDGHCDRSTVPSVSSISRVLRIKFGKKEEEDEAD 172
Query: 216 QK-----KRAFYRWYQL-----EKTNPGATLSMRPAPIPIEDPEWRQTPPPVSATSGTFR 265
+K K+A + + + + G+ + P +P++ R
Sbjct: 173 KKEDDGEKKAKHSIDGILGDKGNRLDEGSDVESEP-DLPLK------------------R 213
Query: 266 LRRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLK 325
+R SR T+ E L +E F YPD REE+A ++T +
Sbjct: 214 KQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQR---------------TKLTEAR 258
Query: 326 VYNWFANRRKEIKRRANIEAAILESHGIDVQSPGG 360
V WF+NRR +++A +H + PGG
Sbjct: 259 VQVWFSNRRARWRKQAGANQLAAFNHLL----PGG 289
>gi|4505619 paired box 7 isoform 1 [Homo sapiens]
Length = 520
Score = 39.3 bits (90), Expect = 0.007
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 19/96 (19%)
Query: 265 RLRRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSL 324
R +R SR T+ E L +E F YPD REE+A ++T
Sbjct: 215 RKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQR---------------TKLTEA 259
Query: 325 KVYNWFANRRKEIKRRANIEAAILESHGIDVQSPGG 360
+V WF+NRR +++A +H + PGG
Sbjct: 260 RVQVWFSNRRARWRKQAGANQLAAFNHLL----PGG 291
>gi|207029223 paired box 7 isoform 3 [Homo sapiens]
Length = 505
Score = 39.3 bits (90), Expect = 0.007
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 19/96 (19%)
Query: 265 RLRRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSL 324
R +R SR T+ E L +E F YPD REE+A ++T
Sbjct: 215 RKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQR---------------TKLTEA 259
Query: 325 KVYNWFANRRKEIKRRANIEAAILESHGIDVQSPGG 360
+V WF+NRR +++A +H + PGG
Sbjct: 260 RVQVWFSNRRARWRKQAGANQLAAFNHLL----PGG 291
>gi|126116581 retina and anterior neural fold homeobox [Homo
sapiens]
Length = 346
Score = 38.9 bits (89), Expect = 0.009
Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 33/140 (23%)
Query: 228 EKTNPGATLSMRPAP--------IPIEDPEWRQTPP-PVSATSGTFRL---------RRG 269
E + P + PAP P E E R +P PV +G +L R
Sbjct: 79 EGSEPSPPPAPAPAPEYEAPRPYCPKEPGEARPSPGLPVGPATGEAKLSEEEQPKKKHRR 138
Query: 270 SRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNW 329
+R T+ L +E F ++ YPD REE+A N + ++V W
Sbjct: 139 NRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVN---------------LPEVRVQVW 183
Query: 330 FANRRKEIKRRANIEAAILE 349
F NRR + +R+ +E + ++
Sbjct: 184 FQNRRAKWRRQEKLEVSSMK 203
>gi|11119420 orthodenticle homeobox 2 isoform a [Homo sapiens]
Length = 297
Score = 38.9 bits (89), Expect = 0.009
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 15/105 (14%)
Query: 236 LSMRPAPIPIEDPEWRQTPPPVSATSGTFRLRRGSRFTWRKECLAVMESYFNENQYPDEA 295
LS+ + + + P P S + T R +R R T+ + L V+E+ F + +YPD
Sbjct: 15 LSLTTSGMDLLHPSVGYPGPWASCPAATPRKQRRERTTFTRAQLDVLEALFAKTRYPDIF 74
Query: 296 KREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRR 340
REE+A N + +V WF NRR + +++
Sbjct: 75 MREEVALKIN---------------LPESRVQVWFKNRRAKCRQQ 104
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 38.1 bits (87), Expect = 0.015
Identities = 31/115 (26%), Positives = 44/115 (38%), Gaps = 15/115 (13%)
Query: 265 RLRRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSL 324
R +R R T+ L +E F E YPD REE+A + +T
Sbjct: 96 RKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKID---------------LTEA 140
Query: 325 KVYNWFANRRKEIKRRANIEAAILESHGIDVQSPGGHSNSDDVDGNDYSEQDDST 379
+V WF NRR + +++ AA + S+ DD S DST
Sbjct: 141 RVQVWFQNRRAKFRKQERAAAAAAAAAKNGSSGKKSDSSRDDESKEAKSTDPDST 195
>gi|154146223 splicing factor, arginine/serine-rich 130 [Homo
sapiens]
Length = 805
Score = 37.7 bits (86), Expect = 0.020
Identities = 33/129 (25%), Positives = 62/129 (48%), Gaps = 18/129 (13%)
Query: 55 QEHSDKFGR-RSSYGGSSYGNSTNNVPASSSTATASTQTQHSGMSPSPSNSYDTSPQPCT 113
+EH +K + RS G SS G+S++N SS+++T S+ + S S ++S +SP+
Sbjct: 497 KEHKEKEKQGRSRSGSSSSGSSSSNSRTSSTSSTVSSSSYSSSSGSSRTSSRSSSPK--- 553
Query: 114 TNQNGRENNERLSTSNGKMSPTRYHANSMGQRSYSFEASEEDLDVDDK-------VEELM 166
+ R + R T + S +R ++ R E++ + + D+ +E
Sbjct: 554 --RKKRHSRSRSPTIKARRSRSRSYS-----RRIKIESNRARVKIRDRRRSNRNSIERER 606
Query: 167 RRDSSVIKE 175
RR+ S +E
Sbjct: 607 RRNRSPSRE 615
>gi|154146193 splicing factor, arginine/serine-rich 130 [Homo
sapiens]
Length = 805
Score = 37.7 bits (86), Expect = 0.020
Identities = 33/129 (25%), Positives = 62/129 (48%), Gaps = 18/129 (13%)
Query: 55 QEHSDKFGR-RSSYGGSSYGNSTNNVPASSSTATASTQTQHSGMSPSPSNSYDTSPQPCT 113
+EH +K + RS G SS G+S++N SS+++T S+ + S S ++S +SP+
Sbjct: 497 KEHKEKEKQGRSRSGSSSSGSSSSNSRTSSTSSTVSSSSYSSSSGSSRTSSRSSSPK--- 553
Query: 114 TNQNGRENNERLSTSNGKMSPTRYHANSMGQRSYSFEASEEDLDVDDK-------VEELM 166
+ R + R T + S +R ++ R E++ + + D+ +E
Sbjct: 554 --RKKRHSRSRSPTIKARRSRSRSYS-----RRIKIESNRARVKIRDRRRSNRNSIERER 606
Query: 167 RRDSSVIKE 175
RR+ S +E
Sbjct: 607 RRNRSPSRE 615
>gi|4826912 paired-like homeodomain 3 [Homo sapiens]
Length = 302
Score = 37.4 bits (85), Expect = 0.026
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 15/82 (18%)
Query: 267 RRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKV 326
+R R + + L +E+ F N+YPD + REEIA N +T +V
Sbjct: 62 QRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTN---------------LTEARV 106
Query: 327 YNWFANRRKEIKRRANIEAAIL 348
WF NRR + ++R + A L
Sbjct: 107 RVWFKNRRAKWRKRERSQQAEL 128
>gi|152963644 paired-like homeodomain transcription factor 1 [Homo
sapiens]
Length = 314
Score = 37.4 bits (85), Expect = 0.026
Identities = 31/107 (28%), Positives = 45/107 (42%), Gaps = 15/107 (14%)
Query: 267 RRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKV 326
+R R + + L +E+ F N+YPD + REEIA N +T +V
Sbjct: 89 QRRQRTHFTSQQLQELEATFQRNRYPDMSMREEIAVWTN---------------LTEPRV 133
Query: 327 YNWFANRRKEIKRRANIEAAILESHGIDVQSPGGHSNSDDVDGNDYS 373
WF NRR + ++R + L G Q G +DV YS
Sbjct: 134 RVWFKNRRAKWRKRERNQQLDLCKGGYVPQFSGLVQPYEDVYAAGYS 180
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.126 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,257,663
Number of Sequences: 37866
Number of extensions: 772499
Number of successful extensions: 4347
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 157
Number of HSP's that attempted gapping in prelim test: 3714
Number of HSP's gapped (non-prelim): 651
length of query: 420
length of database: 18,247,518
effective HSP length: 105
effective length of query: 315
effective length of database: 14,271,588
effective search space: 4495550220
effective search space used: 4495550220
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.