Guide to the Human Genome
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Name: HMBOX1 Sequence: fasta or formatted (420aa) NCBI GI: 209180434
Description:

homeobox containing 1

Referenced in:

Homeobox and Related Proteins

Other entries for this name:
alt mRNA [420aa] homeobox containing 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         30           2
 C cysteine            0.7          3           1
 D aspartate           6.4         27           3
 E glutamate           7.9         33           2
 F phenylalanine       2.4         10           1
 G glycine             4.8         20           2
 H histidine           2.9         12           1
 I isoleucine          4.5         19           1
 K lysine              4.3         18           2
 L leucine             6.9         29           2
 M methionine          2.4         10           1
 N asparagine          5.5         23           2
 P proline             4.8         20           3
 Q glutamine           5.2         22           2
 R arginine            7.6         32           2
 S serine             11.9         50           3
 T threonine           6.4         27           2
 V valine              4.3         18           2
 W tryptophan          1.2          5           1
 Y tyrosine            2.9         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   homeobox containing 1 
HMBOX1                1.000   homeobox containing 1 
HNF1A                 0.061   hepatic nuclear factor-1-alpha 
HNF1B                 0.059   transcription factor 2 
PAX3                  0.027   paired box 3 isoform PAX3i 
PAX3                  0.027   paired box 3 isoform PAX3g 
PAX3                  0.027   paired box 3 isoform PAX3h 
PAX3                  0.027   paired box 3 isoform PAX3e 
PAX3                  0.027   paired box 3 isoform PAX3d 
PAX3                  0.027   paired box 3 isoform PAX3 
PBX1                  0.022   pre-B-cell leukemia homeobox 1 
PRRX1                 0.022   paired mesoderm homeobox 1 isoform pmx-1a 
PRRX1                 0.022   paired mesoderm homeobox 1 isoform pmx-1b 
ESX1                  0.022   extraembryonic, spermatogenesis, homeobox 1-like [Ho...
NOBOX                 0.022   NOBOX oogenesis homeobox 
PITX2                 0.020   paired-like homeodomain transcription factor 2 isofo...
PITX2                 0.020   paired-like homeodomain transcription factor 2 isofo...
PITX2                 0.020   paired-like homeodomain transcription factor 2 isofo...
ARX                   0.020   aristaless related homeobox 
GSC2                  0.018   goosecoid homeobox 2 
PAX7                  0.018   paired box 7 isoform 2 
PAX7                  0.017   paired box 7 isoform 1 
PAX7                  0.017   paired box 7 isoform 3 
RAX                   0.017   retina and anterior neural fold homeobox 
OTX2                  0.017   orthodenticle homeobox 2 isoform a 
PHOX2B                0.016   paired-like homeobox 2b 
SFRS18                0.016   splicing factor, arginine/serine-rich 130 
SFRS18                0.016   splicing factor, arginine/serine-rich 130 
PITX3                 0.015   paired-like homeodomain 3 
PITX1                 0.015   paired-like homeodomain transcription factor 1 [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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