Guide to the Human Genome
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Name: ASTN2 Sequence: fasta or formatted (1288aa) NCBI GI: 46488915
Description:

astrotactin 2 isoform a

Referenced in:

Neurons
Small RNAs in RNA Processing

Other entries for this name:
alt prot [395aa] astrotactin 2 isoform d
alt prot [1335aa] astrotactin 2 isoform b
alt prot [1339aa] astrotactin 2 isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         78           6
 C cysteine            3.3         43           1
 D aspartate           5.3         68           2
 E glutamate           7.0         90           2
 F phenylalanine       3.3         42           2
 G glycine             7.2         93           2
 H histidine           2.4         31           2
 I isoleucine          3.8         49           2
 K lysine              4.1         53           2
 L leucine            11.4        147           6
 M methionine          1.9         24           1
 N asparagine          2.5         32           2
 P proline             6.1         78           4
 Q glutamine           4.0         52           3
 R arginine            5.5         71           3
 S serine              9.3        120           3
 T threonine           6.1         78           2
 V valine              6.2         80           2
 W tryptophan          1.2         16           1
 Y tyrosine            3.3         43           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   astrotactin 2 isoform a 
ASTN2                 0.991   astrotactin 2 isoform c 
ASTN2                 0.986   astrotactin 2 isoform b 
ASTN1                 0.475   astrotactin isoform 1 
ASTN1                 0.452   astrotactin isoform 2 
ASTN2                 0.293   astrotactin 2 isoform d 
LOC100291924          0.238   PREDICTED: similar to astrotactin 2 
FBN2                  0.011   fibrillin 2 precursor 
SCUBE2                0.009   CEGP1 protein 
LRP1                  0.008   low density lipoprotein-related protein 1 
FUSSEL18              0.008   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.008   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.008   PREDICTED: functional smad suppressing element 18 [...
LRP1B                 0.008   low density lipoprotein-related protein 1B precursor...
SCUBE1                0.008   signal peptide, CUB domain, EGF-like 1 
EGF                   0.008   epidermal growth factor (beta-urogastrone) 
ATRN                  0.007   attractin isoform 2 
ATRN                  0.007   attractin isoform 1 
MATN2                 0.007   matrilin 2 isoform b precursor 
MATN2                 0.007   matrilin 2 isoform a precursor 
MEGF6                 0.007   EGF-like-domain, multiple 3 
LOC100127930          0.006   PREDICTED: hypothetical protein 
STAB2                 0.006   stabilin 2 precursor 
LRP4                  0.006   low density lipoprotein receptor-related protein 4 ...
LOC100128960          0.006   PREDICTED: similar to paraneoplastic antigen MA2 [H...
LOC100128960          0.006   PREDICTED: similar to Putative paraneoplastic antig...
FBN1                  0.006   fibrillin 1 precursor 
FBN3                  0.006   fibrillin 3 precursor 
VAX1                  0.006   ventral anterior homeobox 1 isoform a 
SORCS2                0.005   VPS10 domain receptor protein SORCS 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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