Guide to the Human Genome
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Name: LOC100291924 Sequence: fasta or formatted (451aa) NCBI GI: 239755157
Description:

PREDICTED: similar to astrotactin 2

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         30           3
 C cysteine            2.0          9           1
 D aspartate           4.2         19           2
 E glutamate           7.5         34           2
 F phenylalanine       3.3         15           2
 G glycine             5.3         24           2
 H histidine           2.7         12           1
 I isoleucine          4.2         19           1
 K lysine              4.0         18           2
 L leucine             9.8         44           6
 M methionine          2.0          9           1
 N asparagine          2.0          9           1
 P proline             4.4         20           2
 Q glutamine           5.8         26           2
 R arginine            7.1         32           3
 S serine             10.9         49           3
 T threonine           7.3         33           2
 V valine              7.1         32           3
 W tryptophan          1.6          7           1
 Y tyrosine            2.2         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to astrotactin 2 
ASTN2                 0.844   astrotactin 2 isoform c 
ASTN2                 0.844   astrotactin 2 isoform b 
ASTN2                 0.689   astrotactin 2 isoform a 
ASTN1                 0.389   astrotactin isoform 1 
ASTN1                 0.389   astrotactin isoform 2 
KIF3B                 0.009   kinesin family member 3B 
SFRS2                 0.009   splicing factor, arginine/serine-rich 2 
PVRL4                 0.009   poliovirus receptor-related 4 
SPEN                  0.009   spen homolog, transcriptional regulator 
FRAS1                 0.008   Fraser syndrome 1 
PCDHGA2               0.008   protocadherin gamma subfamily A, 2 isoform 1 precurs...
SOX5                  0.007   SRY (sex determining region Y)-box 5 isoform b [Homo...
SOX5                  0.007   SRY (sex determining region Y)-box 5 isoform a [Homo...
C20orf194             0.007   hypothetical protein LOC25943 
PCDHGA2               0.007   protocadherin gamma subfamily A, 2 isoform 2 precurs...
MFSD3                 0.007   major facilitator superfamily domain containing 3 [H...
SMARCA4               0.006   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.006   SWI/SNF-related matrix-associated actin-dependent r...
ACVR1B                0.006   activin A receptor, type IB isoform c precursor [Hom...
ACVR1B                0.006   activin A receptor, type IB isoform b precursor [Hom...
ACVR1B                0.006   activin A receptor, type IB isoform a precursor [Homo...
ITGAL                 0.006   integrin alpha L isoform b precursor 
ITGAL                 0.006   integrin alpha L isoform a precursor 
CENPC1                0.006   centromere protein C 1 
GON4L                 0.006   gon-4-like isoform a 
C2orf74               0.006   hypothetical protein LOC339804 isoform 1 
SMARCA4               0.006   SWI/SNF-related matrix-associated actin-dependent r...
FLJ37396              0.006   PREDICTED: hypothetical protein LOC285754 
FLJ37396              0.006   PREDICTED: hypothetical protein LOC285754 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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