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Search of human proteins with 46397375
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|46397375 ring finger protein 220 [Homo sapiens]
(566 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|46397375 ring finger protein 220 [Homo sapiens] 1160 0.0
gi|19923717 deltex 3-like [Homo sapiens] 44 5e-04
gi|165932346 ring finger protein 180 isoform 1 [Homo sapiens] 43 9e-04
gi|109134327 PTD016 protein [Homo sapiens] 40 0.006
gi|21071052 helicase-like transcription factor [Homo sapiens] 40 0.007
gi|21071054 helicase-like transcription factor [Homo sapiens] 40 0.007
gi|8923898 zinc finger protein 313 [Homo sapiens] 40 0.007
gi|4506561 ring finger protein 4 [Homo sapiens] 39 0.010
gi|158186614 transmembrane protein 118 isoform 1 [Homo sapiens] 38 0.022
gi|109240538 polycomb group ring finger 1 [Homo sapiens] 38 0.028
gi|51988887 SH3 domain containing ring finger 1 [Homo sapiens] 37 0.037
gi|14550405 postreplication repair protein hRAD18p [Homo sapiens] 37 0.048
gi|169160953 PREDICTED: hypothetical LOC644006 [Homo sapiens] 37 0.048
gi|30425428 deltex homolog 3 [Homo sapiens] 37 0.048
gi|239747623 PREDICTED: hypothetical protein XP_002347917 [Homo ... 36 0.082
gi|14670266 tripartite motif protein TRIM4 isoform alpha [Homo s... 36 0.082
gi|15011941 tripartite motif protein TRIM4 isoform beta [Homo sa... 36 0.082
gi|4508005 tripartite motif-containing 26 [Homo sapiens] 36 0.082
gi|88943822 PREDICTED: hypothetical protein LOC644006 [Homo sapi... 36 0.11
gi|27883842 BMI1 polycomb ring finger oncogene [Homo sapiens] 35 0.14
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d... 35 0.14
gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b ... 35 0.14
gi|91984775 regulator of telomere elongation helicase 1 isoform ... 35 0.14
gi|6005964 ring finger protein 110 [Homo sapiens] 35 0.14
gi|237681119 breast cancer 1, early onset isoform 2 [Homo sapiens] 35 0.18
gi|237681125 breast cancer 1, early onset isoform 5 [Homo sapiens] 35 0.18
gi|237681123 breast cancer 1, early onset isoform 4 [Homo sapiens] 35 0.18
gi|6552299 breast cancer 1, early onset isoform 1 [Homo sapiens] 35 0.18
gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f... 35 0.18
gi|30520320 ring finger protein 166 [Homo sapiens] 35 0.18
>gi|46397375 ring finger protein 220 [Homo sapiens]
Length = 566
Score = 1160 bits (3002), Expect = 0.0
Identities = 566/566 (100%), Positives = 566/566 (100%)
Query: 1 MDLHRAAFKMENSSYLPNPLASPALMVLASTAEASRDASIPCQQPRPFGVPVSVDKDVHI 60
MDLHRAAFKMENSSYLPNPLASPALMVLASTAEASRDASIPCQQPRPFGVPVSVDKDVHI
Sbjct: 1 MDLHRAAFKMENSSYLPNPLASPALMVLASTAEASRDASIPCQQPRPFGVPVSVDKDVHI 60
Query: 61 PFTNGSYTFASMYHRQGGVPGTFANRDFPPSLLHLHPQFAPPNLDCTPISMLNHSGVGAF 120
PFTNGSYTFASMYHRQGGVPGTFANRDFPPSLLHLHPQFAPPNLDCTPISMLNHSGVGAF
Sbjct: 61 PFTNGSYTFASMYHRQGGVPGTFANRDFPPSLLHLHPQFAPPNLDCTPISMLNHSGVGAF 120
Query: 121 RPFASTEDRESYQSAFTPAKRLKNCHDTESPHLRFSDADGKEYDFGTQLPSSSPGSLKVD 180
RPFASTEDRESYQSAFTPAKRLKNCHDTESPHLRFSDADGKEYDFGTQLPSSSPGSLKVD
Sbjct: 121 RPFASTEDRESYQSAFTPAKRLKNCHDTESPHLRFSDADGKEYDFGTQLPSSSPGSLKVD 180
Query: 181 DTGKKIFAVSGLISDREASSSPEDRNDRCKKKAAALFDSQAPICPICQVLLRPSELQEHM 240
DTGKKIFAVSGLISDREASSSPEDRNDRCKKKAAALFDSQAPICPICQVLLRPSELQEHM
Sbjct: 181 DTGKKIFAVSGLISDREASSSPEDRNDRCKKKAAALFDSQAPICPICQVLLRPSELQEHM 240
Query: 241 EQELEQLAQLPSSKNSLLKDAMAPGTPKSLLLSASIKREGESPTASPHSSATDDLHHSDR 300
EQELEQLAQLPSSKNSLLKDAMAPGTPKSLLLSASIKREGESPTASPHSSATDDLHHSDR
Sbjct: 241 EQELEQLAQLPSSKNSLLKDAMAPGTPKSLLLSASIKREGESPTASPHSSATDDLHHSDR 300
Query: 301 YQTFLRVRANRQTRLNARIGKMKRRKQDEGQREGSCMAEDDAVDIEHENNNRFEEYEWCG 360
YQTFLRVRANRQTRLNARIGKMKRRKQDEGQREGSCMAEDDAVDIEHENNNRFEEYEWCG
Sbjct: 301 YQTFLRVRANRQTRLNARIGKMKRRKQDEGQREGSCMAEDDAVDIEHENNNRFEEYEWCG 360
Query: 361 QKRIRATTLLEGGFRGSGFIMCSGKENPDSDADLDVDGDDTLEYGKPQYTEADVIPCTGE 420
QKRIRATTLLEGGFRGSGFIMCSGKENPDSDADLDVDGDDTLEYGKPQYTEADVIPCTGE
Sbjct: 361 QKRIRATTLLEGGFRGSGFIMCSGKENPDSDADLDVDGDDTLEYGKPQYTEADVIPCTGE 420
Query: 421 EPGEAKEREALRGAVLNGGPPSTRITPEFSKWASDEMPSTSNGESSKQEAMQKTCKNSDI 480
EPGEAKEREALRGAVLNGGPPSTRITPEFSKWASDEMPSTSNGESSKQEAMQKTCKNSDI
Sbjct: 421 EPGEAKEREALRGAVLNGGPPSTRITPEFSKWASDEMPSTSNGESSKQEAMQKTCKNSDI 480
Query: 481 EKITEDSAVTTFEALKARVRELERQLSRGDRYKCLICMDSYSMPLTSIQCWHVHCEECWL 540
EKITEDSAVTTFEALKARVRELERQLSRGDRYKCLICMDSYSMPLTSIQCWHVHCEECWL
Sbjct: 481 EKITEDSAVTTFEALKARVRELERQLSRGDRYKCLICMDSYSMPLTSIQCWHVHCEECWL 540
Query: 541 RTLGAKKLCPQCNTITAPGDLRRIYL 566
RTLGAKKLCPQCNTITAPGDLRRIYL
Sbjct: 541 RTLGAKKLCPQCNTITAPGDLRRIYL 566
>gi|19923717 deltex 3-like [Homo sapiens]
Length = 740
Score = 43.5 bits (101), Expect = 5e-04
Identities = 21/72 (29%), Positives = 32/72 (44%)
Query: 483 ITEDSAVTTFEALKARVRELERQLSRGDRYKCLICMDSYSMPLTSIQCWHVHCEECWLRT 542
I D + LK V +L + ++ C+ICMD+ S +C H C C +
Sbjct: 530 IDSDDSKAASPPLKGSVSSEASELDKKEKGICVICMDTISNKKVLPKCKHEFCAPCINKA 589
Query: 543 LGAKKLCPQCNT 554
+ K +CP C T
Sbjct: 590 MSYKPICPTCQT 601
>gi|165932346 ring finger protein 180 isoform 1 [Homo sapiens]
Length = 592
Score = 42.7 bits (99), Expect = 9e-04
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 510 DRYKCLICMDSYSMPLTSIQCWHVHCEECWLRTLG----AKKLCPQCNTI 555
D Y C +C+D Y P C H+ CE C LRTL + CP C TI
Sbjct: 428 DSYICAVCLDVYFNPYMCYPCHHIFCEPC-LRTLAKDNPSSTPCPLCRTI 476
>gi|109134327 PTD016 protein [Homo sapiens]
Length = 435
Score = 40.0 bits (92), Expect = 0.006
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 514 CLICMDSYSMPLTSIQCWHVHCEECWLRTLGAKKLCPQCNTI 555
C IC + P+ I C H+ CEEC +K CP C T+
Sbjct: 375 CSICQAEFQKPILLI-CQHIFCEECMTLWFNREKTCPLCRTV 415
>gi|21071052 helicase-like transcription factor [Homo sapiens]
Length = 1009
Score = 39.7 bits (91), Expect = 0.007
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 490 TTFEALKARVRELERQLSRGDRYKCLICMDSYSMPLTSIQCWHVHCEECWLRTLGAKK-- 547
T E K +R+++ LS G +C IC+DS ++P+ + C HV C+ C + + ++
Sbjct: 736 TPEELRKKLIRKMKLILSSGSDEECAICLDSLTVPVIT-HCAHVFCKPCICQVIQNEQPH 794
Query: 548 -LCPQC 552
CP C
Sbjct: 795 AKCPLC 800
>gi|21071054 helicase-like transcription factor [Homo sapiens]
Length = 1009
Score = 39.7 bits (91), Expect = 0.007
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 490 TTFEALKARVRELERQLSRGDRYKCLICMDSYSMPLTSIQCWHVHCEECWLRTLGAKK-- 547
T E K +R+++ LS G +C IC+DS ++P+ + C HV C+ C + + ++
Sbjct: 736 TPEELRKKLIRKMKLILSSGSDEECAICLDSLTVPVIT-HCAHVFCKPCICQVIQNEQPH 794
Query: 548 -LCPQC 552
CP C
Sbjct: 795 AKCPLC 800
>gi|8923898 zinc finger protein 313 [Homo sapiens]
Length = 228
Score = 39.7 bits (91), Expect = 0.007
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 511 RYKCLICMDSYSMPLTSIQCWHVHCEECWLRTLGAKK-LCPQCNTITAPG 559
R+ C +C++ Y P+ + C HV C C L KK +C C + APG
Sbjct: 26 RFTCPVCLEVYEKPV-QVPCGHVFCSACLQECLKPKKPVCGVCRSALAPG 74
>gi|4506561 ring finger protein 4 [Homo sapiens]
Length = 190
Score = 39.3 bits (90), Expect = 0.010
Identities = 30/99 (30%), Positives = 39/99 (39%), Gaps = 9/99 (9%)
Query: 462 NGESSKQEAMQKTCKNSDIEKITEDSAV--TTFEALKARVRELERQLSRGDRYKCLICMD 519
N Q+ +SD E+++ D V TT AR E L C ICMD
Sbjct: 79 NARRLPQDHADSCVVSSDDEELSRDRDVYVTTHTPRNAR-DEGATGLRPSGTVSCPICMD 137
Query: 520 SYS------MPLTSIQCWHVHCEECWLRTLGAKKLCPQC 552
YS + S +C HV C +C +L CP C
Sbjct: 138 GYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTC 176
>gi|158186614 transmembrane protein 118 isoform 1 [Homo sapiens]
Length = 444
Score = 38.1 bits (87), Expect = 0.022
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 514 CLICMDSYSMPLTSIQCWHVHCEECWLRTLGAKKLCPQCNTI 555
C IC + PL + C HV CEEC L ++ CP C ++
Sbjct: 384 CAICQAEFREPLILL-CQHVFCEECLCLWLDRERTCPLCRSV 424
>gi|109240538 polycomb group ring finger 1 [Homo sapiens]
Length = 259
Score = 37.7 bits (86), Expect = 0.028
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 493 EALKARVRELERQLSRGDRYKCLICMDSYSMPLTSIQCWHVHCEECWLRTLGAKKLCPQC 552
E ++ ++++L + C +C + T +C H C+ C ++ L K CP C
Sbjct: 32 EEVRVKIKDLNEHIV------CCLCAGYFVDATTITECLHTFCKSCIVKYLQTSKYCPMC 85
Query: 553 N 553
N
Sbjct: 86 N 86
>gi|51988887 SH3 domain containing ring finger 1 [Homo sapiens]
Length = 888
Score = 37.4 bits (85), Expect = 0.037
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 510 DRYKCLICMDSYSMPLTSIQCWHVHCEECWLRTLGAKK--LCPQCNTITAPG 559
D +C +C++ + C H C+ C L +G++ CP+C T+ G
Sbjct: 8 DLLECPVCLERLDASAKVLPCQHTFCKRCLLGIVGSRNELRCPECRTLVGSG 59
>gi|14550405 postreplication repair protein hRAD18p [Homo sapiens]
Length = 495
Score = 37.0 bits (84), Expect = 0.048
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 510 DRYKCLICMDSYSMPLTSIQCWHVHCEECWLRTLGAKKLCPQCNTITAPGDLR 562
D +C IC + +++ + QC H +C C + L K CP C DL+
Sbjct: 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLK 73
Score = 30.8 bits (68), Expect = 3.5
Identities = 15/56 (26%), Positives = 30/56 (53%)
Query: 224 CPICQVLLRPSELQEHMEQELEQLAQLPSSKNSLLKDAMAPGTPKSLLLSASIKRE 279
CP+C V + S + +H++ L + + S ++S+ K P T +LL +K++
Sbjct: 204 CPVCGVNIPESHINKHLDSCLSREEKKESLRSSVHKRKPLPKTVYNLLSDRDLKKK 259
>gi|169160953 PREDICTED: hypothetical LOC644006 [Homo sapiens]
Length = 190
Score = 37.0 bits (84), Expect = 0.048
Identities = 29/99 (29%), Positives = 39/99 (39%), Gaps = 9/99 (9%)
Query: 462 NGESSKQEAMQKTCKNSDIEKITEDSAV--TTFEALKARVRELERQLSRGDRYKCLICMD 519
N Q+ + +SD E ++ D V TT + R E L C ICMD
Sbjct: 79 NARRLPQDHADSSMVSSDDELLSRDRDVYVTTHTSRNTR-DEGATGLRPSGTVGCPICMD 137
Query: 520 SYS------MPLTSIQCWHVHCEECWLRTLGAKKLCPQC 552
YS + S +C HV C +C +L CP C
Sbjct: 138 RYSEIVQNRRLIVSTECGHVFCSQCLRDSLKNANTCPTC 176
>gi|30425428 deltex homolog 3 [Homo sapiens]
Length = 347
Score = 37.0 bits (84), Expect = 0.048
Identities = 16/39 (41%), Positives = 18/39 (46%)
Query: 514 CLICMDSYSMPLTSIQCWHVHCEECWLRTLGAKKLCPQC 552
C IC+ T +C H CE C R L KK CP C
Sbjct: 164 CPICLGEIQNAKTLEKCRHSFCEGCITRALQVKKACPMC 202
>gi|239747623 PREDICTED: hypothetical protein XP_002347917 [Homo
sapiens]
Length = 190
Score = 36.2 bits (82), Expect = 0.082
Identities = 29/99 (29%), Positives = 38/99 (38%), Gaps = 9/99 (9%)
Query: 462 NGESSKQEAMQKTCKNSDIEKITEDSAV--TTFEALKARVRELERQLSRGDRYKCLICMD 519
N Q+ +SD E ++ D V TT + R E L C ICMD
Sbjct: 79 NARRLPQDHADSCMVSSDDELLSRDRDVYVTTHTSRNTR-DEGATGLRPSGTVGCPICMD 137
Query: 520 SYS------MPLTSIQCWHVHCEECWLRTLGAKKLCPQC 552
YS + S +C HV C +C +L CP C
Sbjct: 138 RYSEIVQNRRLIVSTECGHVFCSQCLRDSLKNANTCPTC 176
>gi|14670266 tripartite motif protein TRIM4 isoform alpha [Homo
sapiens]
Length = 500
Score = 36.2 bits (82), Expect = 0.082
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 514 CLICMDSYSMPLTSIQCWHVHCEECWLRTL---GAKKLCPQCNTITAPGDLR 562
C IC+D + P+ SI+C H C C R G CP+C +AP LR
Sbjct: 12 CPICLDYFQDPV-SIECGHNFCRGCLHRNWAPGGGPFPCPECRHPSAPAALR 62
>gi|15011941 tripartite motif protein TRIM4 isoform beta [Homo
sapiens]
Length = 474
Score = 36.2 bits (82), Expect = 0.082
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 514 CLICMDSYSMPLTSIQCWHVHCEECWLRTL---GAKKLCPQCNTITAPGDLR 562
C IC+D + P+ SI+C H C C R G CP+C +AP LR
Sbjct: 12 CPICLDYFQDPV-SIECGHNFCRGCLHRNWAPGGGPFPCPECRHPSAPAALR 62
>gi|4508005 tripartite motif-containing 26 [Homo sapiens]
Length = 539
Score = 36.2 bits (82), Expect = 0.082
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 10/75 (13%)
Query: 494 ALKARVRELERQLSRGDRYKCLICMDSYSMPLTSIQCWHVHCEECW--LRTL-GAKKLCP 550
A A +R LE +++ C IC+D P+T I C HV C C +R + G++ +CP
Sbjct: 2 ATSAPLRSLEEEVT------CSICLDYLRDPVT-IDCGHVFCRSCTTDVRPISGSRPVCP 54
Query: 551 QCNTITAPGDLRRIY 565
C ++R ++
Sbjct: 55 LCKKPFKKENIRPVW 69
>gi|88943822 PREDICTED: hypothetical protein LOC644006 [Homo
sapiens]
Length = 190
Score = 35.8 bits (81), Expect = 0.11
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 514 CLICMDSYS------MPLTSIQCWHVHCEECWLRTLGAKKLCPQC 552
C ICMD YS + S +C HV C +C +L CP C
Sbjct: 132 CPICMDRYSEIVQNRRLIVSTECGHVFCSQCLRDSLKNANTCPTC 176
>gi|27883842 BMI1 polycomb ring finger oncogene [Homo sapiens]
Length = 326
Score = 35.4 bits (80), Expect = 0.14
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 514 CLICMDSYSMPLTSIQCWHVHCEECWLRTLGAKKLCPQCN 553
C++C + T I+C H C+ C +R L K CP C+
Sbjct: 18 CVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICD 57
>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
[Homo sapiens]
Length = 1488
Score = 35.4 bits (80), Expect = 0.14
Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 9/156 (5%)
Query: 147 DTESPHLRFSDADGKEYDFGTQLPSSSPGSLKVDDTGKKIFAVSGLISDREASSSPE--- 203
+ + P R + G + GT LP++SP S V G L ++A+ +PE
Sbjct: 1086 EAQPPVARTQPSSGVDSAVGT-LPATSPQSTSVQAKGTNKLRKPKLPEVQQATKAPESSD 1144
Query: 204 DRNDRCKKKAAALFDSQAPICPICQVLL--RPSELQEHMEQELEQLAQ--LPSSKNSLLK 259
D D + + D + P L PS + +E+ + ++ + + SLL
Sbjct: 1145 DSEDSSDSSSGSEEDGEGPQGAKSAHTLGPTPSRTETLVEETAAESSEDDVVAPSQSLLS 1204
Query: 260 DAMAPG-TPKSLLLSASIKREGESPTASPHSSATDD 294
M PG TP + S + + SP+ S +A DD
Sbjct: 1205 GYMTPGLTPANSQASKATPKLDSSPSVSSTLAAKDD 1240
>gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b [Homo
sapiens]
Length = 1411
Score = 35.4 bits (80), Expect = 0.14
Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 9/156 (5%)
Query: 147 DTESPHLRFSDADGKEYDFGTQLPSSSPGSLKVDDTGKKIFAVSGLISDREASSSPE--- 203
+ + P R + G + GT LP++SP S V G L ++A+ +PE
Sbjct: 1009 EAQPPVARTQPSSGVDSAVGT-LPATSPQSTSVQAKGTNKLRKPKLPEVQQATKAPESSD 1067
Query: 204 DRNDRCKKKAAALFDSQAPICPICQVLL--RPSELQEHMEQELEQLAQ--LPSSKNSLLK 259
D D + + D + P L PS + +E+ + ++ + + SLL
Sbjct: 1068 DSEDSSDSSSGSEEDGEGPQGAKSAHTLGPTPSRTETLVEETAAESSEDDVVAPSQSLLS 1127
Query: 260 DAMAPG-TPKSLLLSASIKREGESPTASPHSSATDD 294
M PG TP + S + + SP+ S +A DD
Sbjct: 1128 GYMTPGLTPANSQASKATPKLDSSPSVSSTLAAKDD 1163
>gi|91984775 regulator of telomere elongation helicase 1 isoform 2
[Homo sapiens]
Length = 1300
Score = 35.4 bits (80), Expect = 0.14
Identities = 14/52 (26%), Positives = 24/52 (46%)
Query: 514 CLICMDSYSMPLTSIQCWHVHCEECWLRTLGAKKLCPQCNTITAPGDLRRIY 565
C C +P C C+ CW R L A ++CP C+T + + +++
Sbjct: 1244 CQGCGAEDVVPFQCPACDFQRCQACWQRHLQASRMCPACHTASRKQSVMQVF 1295
>gi|6005964 ring finger protein 110 [Homo sapiens]
Length = 344
Score = 35.4 bits (80), Expect = 0.14
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 514 CLICMDSYSMPLTSIQCWHVHCEECWLRTLGAKKLCPQCN 553
C +C + T ++C H C+ C +R L K CP C+
Sbjct: 18 CALCGGYFIDATTIVECLHSFCKTCIVRYLETNKYCPMCD 57
>gi|237681119 breast cancer 1, early onset isoform 2 [Homo sapiens]
Length = 1884
Score = 35.0 bits (79), Expect = 0.18
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 498 RVRELERQLSRGDRY-KCLICMDSYSMPLTSIQCWHVHCEECWLRTLGAKK---LCPQC- 552
RV E++ ++ + +C IC++ P+ S +C H+ C+ C L+ L KK CP C
Sbjct: 7 RVEEVQNVINAMQKILECPICLELIKEPV-STKCDHIFCKFCMLKLLNQKKGPSQCPLCK 65
Query: 553 NTIT 556
N IT
Sbjct: 66 NDIT 69
>gi|237681125 breast cancer 1, early onset isoform 5 [Homo sapiens]
Length = 699
Score = 35.0 bits (79), Expect = 0.18
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 498 RVRELERQLSRGDRY-KCLICMDSYSMPLTSIQCWHVHCEECWLRTLGAKK---LCPQC- 552
RV E++ ++ + +C IC++ P+ S +C H+ C+ C L+ L KK CP C
Sbjct: 7 RVEEVQNVINAMQKILECPICLELIKEPV-STKCDHIFCKFCMLKLLNQKKGPSQCPLCK 65
Query: 553 NTIT 556
N IT
Sbjct: 66 NDIT 69
>gi|237681123 breast cancer 1, early onset isoform 4 [Homo sapiens]
Length = 759
Score = 35.0 bits (79), Expect = 0.18
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 498 RVRELERQLSRGDRY-KCLICMDSYSMPLTSIQCWHVHCEECWLRTLGAKK---LCPQC- 552
RV E++ ++ + +C IC++ P+ S +C H+ C+ C L+ L KK CP C
Sbjct: 7 RVEEVQNVINAMQKILECPICLELIKEPV-STKCDHIFCKFCMLKLLNQKKGPSQCPLCK 65
Query: 553 NTIT 556
N IT
Sbjct: 66 NDIT 69
>gi|6552299 breast cancer 1, early onset isoform 1 [Homo sapiens]
Length = 1863
Score = 35.0 bits (79), Expect = 0.18
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 498 RVRELERQLSRGDRY-KCLICMDSYSMPLTSIQCWHVHCEECWLRTLGAKK---LCPQC- 552
RV E++ ++ + +C IC++ P+ S +C H+ C+ C L+ L KK CP C
Sbjct: 7 RVEEVQNVINAMQKILECPICLELIKEPV-STKCDHIFCKFCMLKLLNQKKGPSQCPLCK 65
Query: 553 NTIT 556
N IT
Sbjct: 66 NDIT 69
>gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f
[Homo sapiens]
Length = 1412
Score = 35.0 bits (79), Expect = 0.18
Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 10/157 (6%)
Query: 147 DTESPHLRFSDADGKEYDFGTQLPSSSPGSLKVDDTGKKIFAVSGLISDREASSSPE--- 203
+ + P R + G + GT LP++SP S V G L ++A+ +PE
Sbjct: 1009 EAQPPVARTQPSSGVDSAVGT-LPATSPQSTSVQAKGTNKLRKPKLPEVQQATKAPESSD 1067
Query: 204 DRNDRCKKKAAALFDSQAPICPICQVLL---RPSELQEHMEQELEQLAQ--LPSSKNSLL 258
D D + + D + P L PS + +E+ + ++ + + SLL
Sbjct: 1068 DSEDSSDSSSGSEEDGEGPQGAKSAHTLVGPTPSRTETLVEETAAESSEDDVVAPSQSLL 1127
Query: 259 KDAMAPG-TPKSLLLSASIKREGESPTASPHSSATDD 294
M PG TP + S + + SP+ S +A DD
Sbjct: 1128 SGYMTPGLTPANSQASKATPKLDSSPSVSSTLAAKDD 1164
>gi|30520320 ring finger protein 166 [Homo sapiens]
Length = 237
Score = 35.0 bits (79), Expect = 0.18
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 511 RYKCLICMDSYSMPLTSIQCWHVHCEECWLRTLGA-KKLCPQC 552
+Y C IC++ Y P+ C H C EC L LCP C
Sbjct: 30 QYTCPICLEVYHRPVAIGSCGHTFCGECLQPCLQVPSPLCPLC 72
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.131 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,414,679
Number of Sequences: 37866
Number of extensions: 1237362
Number of successful extensions: 4524
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 117
Number of HSP's that attempted gapping in prelim test: 4454
Number of HSP's gapped (non-prelim): 195
length of query: 566
length of database: 18,247,518
effective HSP length: 108
effective length of query: 458
effective length of database: 14,157,990
effective search space: 6484359420
effective search space used: 6484359420
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.