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Search of human proteins with 46371998
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|46371998 SYF2 homolog, RNA splicing factor isoform 2 [Homo
sapiens]
(201 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|46371998 SYF2 homolog, RNA splicing factor isoform 2 [Homo sa... 400 e-112
gi|7661636 SYF2 homolog, RNA splicing factor isoform 1 [Homo sap... 380 e-106
gi|4503509 eukaryotic translation initiation factor 3, subunit 1... 41 8e-04
gi|116008442 zinc finger CCCH-type containing 13 [Homo sapiens] 35 0.043
gi|148746195 trichohyalin [Homo sapiens] 34 0.096
gi|81295816 nasopharyngeal epithelium specific protein 1 [Homo s... 34 0.096
gi|38045898 RAB6-interacting protein 2 isoform epsilon [Homo sap... 33 0.16
gi|38045896 RAB6-interacting protein 2 isoform delta [Homo sapiens] 33 0.16
gi|91206454 hypothetical protein LOC257415 isoform 2 [Homo sapiens] 33 0.16
gi|91206456 hypothetical protein LOC257415 isoform 1 [Homo sapiens] 33 0.16
gi|4759182 syntaxin 1A (brain) [Homo sapiens] 33 0.21
gi|115298659 spectrin, alpha, erythrocytic 1 [Homo sapiens] 33 0.21
gi|24497453 nucleoporin 88kDa [Homo sapiens] 33 0.21
gi|14165274 golgi-associated microtubule-binding protein HOOK3 [... 33 0.21
gi|92859701 myosin VI [Homo sapiens] 32 0.28
gi|16418379 syntaxin 1B [Homo sapiens] 32 0.36
gi|55741709 RNA binding motif protein 25 [Homo sapiens] 32 0.47
gi|154759259 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ... 32 0.47
gi|194595509 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ... 32 0.47
gi|188528616 testis specific, 10 [Homo sapiens] 32 0.47
gi|13376858 testis specific, 10 [Homo sapiens] 32 0.47
gi|71565160 SMC1 structural maintenance of chromosomes 1-like 2 ... 32 0.47
gi|239749449 PREDICTED: hypothetical protein [Homo sapiens] 31 0.62
gi|48255891 protein kinase C substrate 80K-H isoform 2 [Homo sap... 31 0.62
gi|48255889 protein kinase C substrate 80K-H isoform 1 [Homo sap... 31 0.62
gi|4503293 DEAH (Asp-Glu-Ala-His) box polypeptide 16 [Homo sapiens] 31 0.62
gi|239754909 PREDICTED: hypothetical protein [Homo sapiens] 31 0.81
gi|68161546 misshapen/NIK-related kinase isoform 4 [Homo sapiens] 31 0.81
gi|24850117 misshapen/NIK-related kinase isoform 2 [Homo sapiens] 31 0.81
gi|27436917 misshapen/NIK-related kinase isoform 3 [Homo sapiens] 31 0.81
>gi|46371998 SYF2 homolog, RNA splicing factor isoform 2 [Homo
sapiens]
Length = 201
Score = 400 bits (1028), Expect = e-112
Identities = 201/201 (100%), Positives = 201/201 (100%)
Query: 1 MAAIAASEVLVDSAEEGSLAAAAELAAQKREQRLRKFRELHLMRECAARGEDYEKVKLLE 60
MAAIAASEVLVDSAEEGSLAAAAELAAQKREQRLRKFRELHLMRECAARGEDYEKVKLLE
Sbjct: 1 MAAIAASEVLVDSAEEGSLAAAAELAAQKREQRLRKFRELHLMRECAARGEDYEKVKLLE 60
Query: 61 ISAEDAERWERKKKRKNPDLGFSDYAAAQLRQYHRLTKQIKPDMETYERLREKHGEEFFP 120
ISAEDAERWERKKKRKNPDLGFSDYAAAQLRQYHRLTKQIKPDMETYERLREKHGEEFFP
Sbjct: 61 ISAEDAERWERKKKRKNPDLGFSDYAAAQLRQYHRLTKQIKPDMETYERLREKHGEEFFP 120
Query: 121 TSNSLLHGTHVPSTEEIDRMVIDLEKQIEKRDKYSRRRPYNDDADIDYINERNAKFNKKA 180
TSNSLLHGTHVPSTEEIDRMVIDLEKQIEKRDKYSRRRPYNDDADIDYINERNAKFNKKA
Sbjct: 121 TSNSLLHGTHVPSTEEIDRMVIDLEKQIEKRDKYSRRRPYNDDADIDYINERNAKFNKKA 180
Query: 181 ERFYGKYTAEIKQNLERGTAV 201
ERFYGKYTAEIKQNLERGTAV
Sbjct: 181 ERFYGKYTAEIKQNLERGTAV 201
>gi|7661636 SYF2 homolog, RNA splicing factor isoform 1 [Homo
sapiens]
Length = 243
Score = 380 bits (975), Expect = e-106
Identities = 201/243 (82%), Positives = 201/243 (82%), Gaps = 42/243 (17%)
Query: 1 MAAIAASEVLVDSAEEGSLAAAAELAAQKREQRLRKFRELHLMR---------------- 44
MAAIAASEVLVDSAEEGSLAAAAELAAQKREQRLRKFRELHLMR
Sbjct: 1 MAAIAASEVLVDSAEEGSLAAAAELAAQKREQRLRKFRELHLMRNEARKLNHQEVVEEDK 60
Query: 45 --------------------------ECAARGEDYEKVKLLEISAEDAERWERKKKRKNP 78
ECAARGEDYEKVKLLEISAEDAERWERKKKRKNP
Sbjct: 61 RLKLPANWEAKKARLEWELKEEEKKKECAARGEDYEKVKLLEISAEDAERWERKKKRKNP 120
Query: 79 DLGFSDYAAAQLRQYHRLTKQIKPDMETYERLREKHGEEFFPTSNSLLHGTHVPSTEEID 138
DLGFSDYAAAQLRQYHRLTKQIKPDMETYERLREKHGEEFFPTSNSLLHGTHVPSTEEID
Sbjct: 121 DLGFSDYAAAQLRQYHRLTKQIKPDMETYERLREKHGEEFFPTSNSLLHGTHVPSTEEID 180
Query: 139 RMVIDLEKQIEKRDKYSRRRPYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERG 198
RMVIDLEKQIEKRDKYSRRRPYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERG
Sbjct: 181 RMVIDLEKQIEKRDKYSRRRPYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERG 240
Query: 199 TAV 201
TAV
Sbjct: 241 TAV 243
>gi|4503509 eukaryotic translation initiation factor 3, subunit 10
theta, 150/170kDa [Homo sapiens]
Length = 1382
Score = 40.8 bits (94), Expect = 8e-04
Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 10/133 (7%)
Query: 25 LAAQKREQRLRKFRELHLMRECAARGEDY-EKVKLLE--ISAEDAERWERKKKRKNPDLG 81
L + R R+ + R+L +MR AAR Y EK+K E ++ E R E +K+++ +
Sbjct: 744 LEHKNRMSRMLEDRDLFVMRLKAARQSVYEEKLKQFEERLAEERHNRLEERKRQRKEERR 803
Query: 82 FSDYAAAQLRQYHRLTKQIKPDMETYERL-REKHGEEFFPTSNSLLHGTHVPSTEEIDRM 140
+ Y + + R +Q+ + E ER R K EE + V EE++R
Sbjct: 804 ITYYREKEEEEQRRAEEQMLKEREERERAERAKREEELRE------YQERVKKLEEVERK 857
Query: 141 VIDLEKQIEKRDK 153
E +IE+R++
Sbjct: 858 KRQRELEIEERER 870
Score = 29.6 bits (65), Expect = 1.8
Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 25/168 (14%)
Query: 4 IAASEVLVDSAEEGSLAAAAELAAQKREQRLRKFRELHLMRECAARGEDYEKVKLLEISA 63
+A + L +S +E A ++R++RL E R + +KV+ E
Sbjct: 552 LAVTAYLKNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAE--- 608
Query: 64 EDAERWERKKKRKNPDLGFSDYAAAQLRQYHRLTKQIKPDMETYERLREKH-GEEFFPTS 122
E+ R E K++ K ++ Q H K+ K E E++++ G + F
Sbjct: 609 EERLRQEAKEREKE-----------RILQEHEQIKK-KTVRERLEQIKKTELGAKAFKDI 656
Query: 123 NSLLHGTHVPSTEEIDRMVIDLE--KQIEKRDKYSRRRPYNDDADIDY 168
+ + EE+D I + +Q+EK K + R N + IDY
Sbjct: 657 D-------IEDLEELDPDFIMAKQVEQLEKEKKELQERLKNQEKKIDY 697
>gi|116008442 zinc finger CCCH-type containing 13 [Homo sapiens]
Length = 1564
Score = 35.0 bits (79), Expect = 0.043
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 19/131 (14%)
Query: 52 DYEKVKLLEISAEDAERWERKKKRKNPDLGFSDYAAAQLRQYHRLTKQIKPDMETYERLR 111
D EK K LEI+ E R ++ K+ + SD RQ R + E+ ++
Sbjct: 1234 DREKTKSLEITGERKSRIDQLKRGEPSRSTSSD------RQDSRSHSSRRSSPESDRQVH 1287
Query: 112 EKHGEEFFPTSNSLLHGTHVPSTEEIDRMVIDLEKQIEKRDKYSRRRPYNDDADIDYINE 171
+ G F + + L +E DR D E++ E+RD +R+R ++ DAD D+
Sbjct: 1288 SRSGS--FDSRDRL---------QERDRYEHDRERERERRD--TRQREWDRDADKDWPRN 1334
Query: 172 RNAKFNKKAER 182
R+ ++ ER
Sbjct: 1335 RDRDRLRERER 1345
>gi|148746195 trichohyalin [Homo sapiens]
Length = 1943
Score = 33.9 bits (76), Expect = 0.096
Identities = 32/147 (21%), Positives = 63/147 (42%), Gaps = 11/147 (7%)
Query: 28 QKREQRLRKFRELHLMRECAARGEDYEKVKLLEISAEDAERWER--KKKRKNPDLGFSDY 85
++ EQ R+ R L E ED E+ + E + RW+ ++KR+ L
Sbjct: 835 EEEEQLQRRERAQQLQEEEDGLQEDQERRRSQEQRRDQKWRWQLEEERKRRRHTLYAKPA 894
Query: 86 AAAQLRQYHRLTKQIKPDMETYERLREKHGEEFFPTSNSLLHGTHVPSTEEIDRMVIDLE 145
QLR+ +L ++ + +++ ER + + E+ + +E +++ L
Sbjct: 895 LQEQLRKEQQLLQEEEEELQREEREKRRRQEQ------ERQYREEEQLQQEEEQL---LR 945
Query: 146 KQIEKRDKYSRRRPYNDDADIDYINER 172
++ EKR + R R Y D + E+
Sbjct: 946 EEREKRRRQERERQYRKDKKLQQKEEQ 972
Score = 30.4 bits (67), Expect = 1.1
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 14/90 (15%)
Query: 28 QKREQRLRKFRELHLMRECAARGEDYEKVKLLEISAEDAERWERKKKRKNPDLGFSDYAA 87
++REQRL++ R+ + E+ E+ + ++ E ER E++ KR+ +
Sbjct: 614 ERREQRLKREEPEEERRQQLLKSEEQEERRQQQLRREQQERREQRLKREEEE-------- 665
Query: 88 AQLRQYHRLTKQIKPDMETYERLREKHGEE 117
RL +++K + E R +E EE
Sbjct: 666 ------ERLEQRLKREHEEERREQELAEEE 689
Score = 28.9 bits (63), Expect = 3.1
Identities = 40/172 (23%), Positives = 70/172 (40%), Gaps = 30/172 (17%)
Query: 15 EEGSLAAAAELAAQKREQRL-----RKFR--ELHLMRECAAR--GEDYEKVKLLE----- 60
E L +L Q+REQ+L RKFR E L R+ R E+ ++V+ E
Sbjct: 1389 ERKFLKEEQQLRCQEREQQLRQDRDRKFREEEQQLSRQERDRKFREEEQQVRRQERERKF 1448
Query: 61 ISAEDAERWERKKKRKNPDLGFSDYAAAQLRQYHRLTKQIKPDME----------TYERL 110
+ E R ER +K + + + QL + R K ++ + + + L
Sbjct: 1449 LEEEQQLRQERHRKFREEEQLLQEREEQQLHRQERDRKFLEEEQQLRRQERDRKFREQEL 1508
Query: 111 REKHGEEFFPTSNSLLHGTHVPSTEEIDRMVIDLEKQIEKRDKYSRRRPYND 162
R + E F LH ++ R + E+Q+ ++++ +RR D
Sbjct: 1509 RSQEPERKFLEEEQQLH------RQQRQRKFLQEEQQLRRQERGQQRRQDRD 1554
Score = 28.5 bits (62), Expect = 4.0
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 10/136 (7%)
Query: 28 QKREQRLRKFRELHLMRECAARGEDYEKVKLLEISAEDAERWERKKKRKNPDLGF---SD 84
++REQRL++ E + + R E E+ + E++ E+ E+ + K + P + S+
Sbjct: 653 ERREQRLKREEEEERLEQRLKR-EHEEERREQELAEEEQEQARERIKSRIPKWQWQLESE 711
Query: 85 YAAAQLRQYHRLTKQ--IKPDMETYERLREKHGEEFFPTSNSLLHGTHVPSTEEIDRMVI 142
A Q + Y R KQ + E E+ R + E + H EE R
Sbjct: 712 ADARQSKVYSRPRKQEGQRRRQEQEEKRRRRESELQWQEEER----AHRQQQEEEQRRDF 767
Query: 143 DLEKQIEKRDKYSRRR 158
+ Q E++ + R+R
Sbjct: 768 TWQWQAEEKSERGRQR 783
Score = 28.1 bits (61), Expect = 5.2
Identities = 31/171 (18%), Positives = 75/171 (43%), Gaps = 16/171 (9%)
Query: 28 QKREQRLRKFRELHLMRECAARGEDYEKVKLLEISAEDAERWERKKKRKNPDLGFSDYAA 87
++++QRLR+ ++L +E R + E+ + E + ER E++ +R+ + +
Sbjct: 294 EQQQQRLRREQQLRRKQEEERREQQEERREQQERREQQEERREQQLRREQEER--REQQL 351
Query: 88 AQLRQYHRLTKQIKPDMETYERLREKHGEEFFPTSNSLLHGTHVPSTEEIDRMVIDLEKQ 147
+ ++ R +Q++ + E R ++ E+ L + +++ R E+Q
Sbjct: 352 RREQEEERREQQLRREQEEERREQQLRREQQLRREQQLRREQQLRREQQLRR-----EQQ 406
Query: 148 IEKRDKYSRRRPYNDDADIDYINERNAKFNKKAERFYGKYTAEIK-QNLER 197
+ + + R + E+ + ++ ER K+ E + Q L+R
Sbjct: 407 LRREQQLRREQQLR--------REQQLRREQEEERHEQKHEQERREQRLKR 449
Score = 27.3 bits (59), Expect = 9.0
Identities = 31/140 (22%), Positives = 60/140 (42%), Gaps = 18/140 (12%)
Query: 24 ELAAQKREQRLRKFRELHLMRECAARGEDYEKVKLLEISAEDAERWERKKKRKNPDLGFS 83
E Q+R+ R RKFRE +R ++ E+ +L + R E +K R+
Sbjct: 1544 ERGQQRRQDRDRKFREEEQLR------QEREEQQLSRQERDRKFRLEEQKVRRQ------ 1591
Query: 84 DYAAAQLRQYHRLTKQIKPDMETYERLREKHGEEFFPTSNSLLHGTHVP-STEEIDRMVI 142
Q R++ +Q++ E ++LR++ +F L +E DR +
Sbjct: 1592 ----EQERKFMEDEQQLR-RQEGQQQLRQERDRKFREDEQLLQEREEQQLHRQERDRKFL 1646
Query: 143 DLEKQIEKRDKYSRRRPYND 162
+ E Q+ ++++ + R D
Sbjct: 1647 EEEPQLRRQEREQQLRHDRD 1666
Score = 27.3 bits (59), Expect = 9.0
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 29 KREQRLRKFRELHLMR-----ECAARGEDYEKVKLLEISAEDAERWERKKKRKNPDLGFS 83
+R++ RKFRE +R E R E Y K+ LE ER E++ +R+ D F
Sbjct: 1717 RRQELERKFREEEQLRQETEQEQLRRQERYRKI--LEEEQLRPEREEQQLRRQERDRKFR 1774
Query: 84 DYAAAQLRQYHRLTKQIKPDMETYERLREK 113
+ QLRQ R +Q++ E+ + RE+
Sbjct: 1775 E--EEQLRQ-EREEQQLR-SQESDRKFREE 1800
>gi|81295816 nasopharyngeal epithelium specific protein 1 [Homo
sapiens]
Length = 551
Score = 33.9 bits (76), Expect = 0.096
Identities = 49/215 (22%), Positives = 90/215 (41%), Gaps = 35/215 (16%)
Query: 2 AAIAASEVLVDSA----EEGSLAAAAELAAQKREQRLRKFRELHLMRECAARGEDYEKVK 57
A + A E L D + +A AE A++ R K +E+ +R + +DY+ +
Sbjct: 327 AELLAQEKLADQMVMEFTKKKMAREAEFEAEQERIRREKEKEIARLRAMQEKAQDYQAEQ 386
Query: 58 ---LLEISAEDAER-WERKKK---RKNPDLGFSDYAAAQLRQY----HRLTKQIKPDMET 106
+ + E A+R W RK+K RK + ++ ++L Q H L Q++ D +
Sbjct: 387 DALRAKRNQEVADREWRRKEKENARKKMETE-AELRKSRLEQVAFKEHALAVQVQRDRDE 445
Query: 107 YERL---------REKHGEEFFPT-----SNSLLHGTHVPSTEEIDRMVIDLEKQIEKRD 152
+ER+ +E+ EE T +N L +E+ + E+ ++
Sbjct: 446 FERILRAQREQIEKERLEEEKKATGRLQHANELRRQVRENQQKEVQNRIATFEEGRRLKE 505
Query: 153 KYSRRRPYNDDADIDYINERNA-----KFNKKAER 182
+ +RR D+ + E A K+ +AER
Sbjct: 506 EAQKRRERIDEIKRKKLEELRATGLPEKYCIEAER 540
Score = 29.3 bits (64), Expect = 2.4
Identities = 37/176 (21%), Positives = 77/176 (43%), Gaps = 29/176 (16%)
Query: 10 LVDSAEEGSLAAAAELAAQKREQRLRKFREL-------HLMRECAARGEDYEKVKLLE-- 60
+++ + S+ EL ++RE+R+R R++ R A + EK ++LE
Sbjct: 231 MMEVERQKSIQRQEELERKRREERIRGRRQIVEQMEKNQEERSLLAEQREQEKEQMLEYM 290
Query: 61 --ISAEDAERWERKKKRKNPDLGFSDYAAAQLRQYHRLTKQIKPDMETYERLREKHGEEF 118
+ ED + ER++++K A++++ + ++ K ++ E+L ++ EF
Sbjct: 291 EQLQEEDLKDMERRQQQKLK-------MQAEIKRINDENQKQKAELLAQEKLADQMVMEF 343
Query: 119 FPTSNSLLHGTHVPSTEEIDRMVIDLEKQIEKRDKYSRRRPYNDDADIDYINERNA 174
T + + +E R EK + +R R + A DY E++A
Sbjct: 344 --TKKKMAREAEFEAEQERIRR--------EKEKEIARLRAMQEKAQ-DYQAEQDA 388
>gi|38045898 RAB6-interacting protein 2 isoform epsilon [Homo sapiens]
Length = 1116
Score = 33.1 bits (74), Expect = 0.16
Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 17/145 (11%)
Query: 13 SAEEGSLAAAAELAAQKREQRLRKFRELHLMRE---CAARGEDYEKVKLLEISAEDAERW 69
S+ + SLA R +R + E+ M++ AA E + LLE+S+
Sbjct: 896 SSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSS----- 950
Query: 70 ERKKKRKNPDLGFSDYAAAQLRQYHRLTKQIKPDMETYERLREKHGEEFFPTSNSLLHGT 129
KKK + + AA R+ RL +Q+K + +L + E+ S+
Sbjct: 951 --KKKTQ-------EEVAALKREKDRLVQQLKQQTQNRMKLMADNYEDDHFKSSHSNQTN 1001
Query: 130 HVPSTEEIDRMVIDLEKQIEKRDKY 154
H PS ++I + +++L++ K Y
Sbjct: 1002 HKPSPDQIIQPLLELDQNRSKLKLY 1026
>gi|38045896 RAB6-interacting protein 2 isoform delta [Homo sapiens]
Length = 1088
Score = 33.1 bits (74), Expect = 0.16
Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 17/145 (11%)
Query: 13 SAEEGSLAAAAELAAQKREQRLRKFRELHLMRE---CAARGEDYEKVKLLEISAEDAERW 69
S+ + SLA R +R + E+ M++ AA E + LLE+S+
Sbjct: 868 SSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSS----- 922
Query: 70 ERKKKRKNPDLGFSDYAAAQLRQYHRLTKQIKPDMETYERLREKHGEEFFPTSNSLLHGT 129
KKK + + AA R+ RL +Q+K + +L + E+ S+
Sbjct: 923 --KKKTQ-------EEVAALKREKDRLVQQLKQQTQNRMKLMADNYEDDHFKSSHSNQTN 973
Query: 130 HVPSTEEIDRMVIDLEKQIEKRDKY 154
H PS ++I + +++L++ K Y
Sbjct: 974 HKPSPDQIIQPLLELDQNRSKLKLY 998
>gi|91206454 hypothetical protein LOC257415 isoform 2 [Homo sapiens]
Length = 237
Score = 33.1 bits (74), Expect = 0.16
Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 14/165 (8%)
Query: 28 QKREQRLRKFRELHLMRECAARGEDYEKVKLLEISAEDAERWERKKKRKNPDLGFSDYAA 87
+K + L +F E M E + + + KLL S +++ +RKKK K +S ++
Sbjct: 42 KKGSKALAEFEEK--MNENWKKELEKHREKLLSGSESSSKKRQRKKKEKKKSGRYSSSSS 99
Query: 88 AQLRQYHRLTKQIKPDMETYERLREKHGEEFFPTSNSLLHGTHVPSTEEIDRMV-----I 142
+ + D + +R R+K +S S + T S + + +
Sbjct: 100 SSSDSSSSSSDSEDEDKKQGKR-RKKKKNRSHKSSESSMSETESDSKDSLKKKKKSKDGT 158
Query: 143 DLEKQI----EKRDKYSRRRPYNDD--ADIDYINERNAKFNKKAE 181
+ EK I +KR YS +P + + ++ +YI E AK K +E
Sbjct: 159 EKEKDIKGLSKKRKMYSEDKPLSSESLSESEYIEEVRAKKKKSSE 203
>gi|91206456 hypothetical protein LOC257415 isoform 1 [Homo sapiens]
Length = 247
Score = 33.1 bits (74), Expect = 0.16
Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 14/165 (8%)
Query: 28 QKREQRLRKFRELHLMRECAARGEDYEKVKLLEISAEDAERWERKKKRKNPDLGFSDYAA 87
+K + L +F E M E + + + KLL S +++ +RKKK K +S ++
Sbjct: 52 KKGSKALAEFEEK--MNENWKKELEKHREKLLSGSESSSKKRQRKKKEKKKSGRYSSSSS 109
Query: 88 AQLRQYHRLTKQIKPDMETYERLREKHGEEFFPTSNSLLHGTHVPSTEEIDRMV-----I 142
+ + D + +R R+K +S S + T S + + +
Sbjct: 110 SSSDSSSSSSDSEDEDKKQGKR-RKKKKNRSHKSSESSMSETESDSKDSLKKKKKSKDGT 168
Query: 143 DLEKQI----EKRDKYSRRRPYNDD--ADIDYINERNAKFNKKAE 181
+ EK I +KR YS +P + + ++ +YI E AK K +E
Sbjct: 169 EKEKDIKGLSKKRKMYSEDKPLSSESLSESEYIEEVRAKKKKSSE 213
>gi|4759182 syntaxin 1A (brain) [Homo sapiens]
Length = 288
Score = 32.7 bits (73), Expect = 0.21
Identities = 42/180 (23%), Positives = 75/180 (41%), Gaps = 30/180 (16%)
Query: 15 EEGSLAAAAELAAQKREQRLRKFRELHLMRECAARGEDYEK------VKLLEISAED--A 66
EEG ++A+L +K + + + +M E A DY + + LEI+ +
Sbjct: 103 EEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTS 162
Query: 67 ERWERKKKRKNPDLGFSDYAAAQLRQYHRLTKQIKPDMETYERLREKHGEEFFPTSNSLL 126
E E + NP + A+ + ++KQ ++ET +H E NS+
Sbjct: 163 EELEDMLESGNPAI-----FASGIIMDSSISKQALSEIET------RHSE-IIKLENSI- 209
Query: 127 HGTHVPSTEEIDRMVIDLEKQIEKRDKYSRRRPYNDDADIDYINERNAKFNKKAERFYGK 186
E+ M +D+ +E + + R YN + +DY+ ER KKA ++ K
Sbjct: 210 --------RELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYV-ERAVSDTKKAVKYQSK 260
>gi|115298659 spectrin, alpha, erythrocytic 1 [Homo sapiens]
Length = 2419
Score = 32.7 bits (73), Expect = 0.21
Identities = 41/177 (23%), Positives = 80/177 (45%), Gaps = 14/177 (7%)
Query: 8 EVLVDSAEEGSLAAAAELAAQKRE--QRLRKFRELHLMRECAARGEDYEKVKLLEISAED 65
E +V+S+ L A E+ +++E R + F+E + E + ED +++ + A+D
Sbjct: 7 ETVVESSGPKVLETAEEIQERRQEVLTRYQSFKER--VAERGQKLEDSYHLQVFKRDADD 64
Query: 66 AERWERKKKRKNPDLGFSDYAAAQLRQYHRLTKQIKPDMETYERLR---EKHGEEFFPTS 122
+W +K D + D ++ ++ + ++ +++T RL EK EE F
Sbjct: 65 LGKWIMEKVNILTDKSYED--PTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERFTMG 122
Query: 123 NSLLHGTHVPSTEEIDRMVIDLEKQIEKRDKYSRRRPY----NDDADI-DYINERNA 174
+S T E + LE +EK D+ R + + ADI ++I ++ A
Sbjct: 123 HSAHEETKAHIEELRHLWDLLLELTLEKGDQLLRALKFQQYVQECADILEWIGDKEA 179
>gi|24497453 nucleoporin 88kDa [Homo sapiens]
Length = 741
Score = 32.7 bits (73), Expect = 0.21
Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 24/139 (17%)
Query: 14 AEEGSLAAAAELAAQKREQRLRKFRELHLMRECAARGEDYEKVKLLEISAEDAERWERKK 73
A E +A E Q + + FRE +++++ A+ E +VKLL +K
Sbjct: 549 ASEKDIAPPPEECLQLLSRATQVFREQYILKQDLAKEEIQRRVKLL----------CDQK 598
Query: 74 KRKNPDLGFSDYAAAQLRQY-HRLTKQIKPDMETYERLREKHGEEFFPTSNSLLHGTH-- 130
K++ DL + LR+ RL + YE +EK E+ LLH H
Sbjct: 599 KKQLEDLSYCREERKSLREMAERLA-------DKYEEAKEKQ-EDIMNRMKKLLHSFHSE 650
Query: 131 VPSTEEIDRMVIDLEKQIE 149
+P + +R D++K+++
Sbjct: 651 LPVLSDSER---DMKKELQ 666
>gi|14165274 golgi-associated microtubule-binding protein HOOK3
[Homo sapiens]
Length = 718
Score = 32.7 bits (73), Expect = 0.21
Identities = 39/187 (20%), Positives = 82/187 (43%), Gaps = 16/187 (8%)
Query: 14 AEEGSLAAAAELAAQKREQRLRKFRELHLMRECAARGEDYEKVKLLEISAEDAERWERKK 73
++E S + AAE+ + ++L + + + M + G D EK+ LL+ +DA RK
Sbjct: 447 SQESSDSLAAEIVTPEIREKLIRLQHENKMLKLNQEGSDNEKIALLQSLLDDANL--RKN 504
Query: 74 KRKNPDLGFSDYAAAQLRQYHRLTKQIK------PDMETYERLREKHGEEFFPTSNSLLH 127
+ + + + Q L K ++ D ++ E+H E+ +N L
Sbjct: 505 ELETENRLVNQRLLEVQSQVEELQKSLQDQGSKAEDSVLLKKKLEEHLEKLHEANNELQK 564
Query: 128 GTHVPSTEEIDRMVIDLEKQIEKRDKYSRRRPYNDDADIDYINERNAKFNKKAERFYGKY 187
+ E+++ + +IE+ + R++ + ++ + ER K+ +KA+
Sbjct: 565 KRAI--IEDLEPRFNNSSLKIEELQEALRKK----EEEMKQMEERYKKYLEKAKSVI--R 616
Query: 188 TAEIKQN 194
T + KQN
Sbjct: 617 TLDPKQN 623
>gi|92859701 myosin VI [Homo sapiens]
Length = 1285
Score = 32.3 bits (72), Expect = 0.28
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 9/113 (7%)
Query: 8 EVLVDSAEEGSLAAAAELAAQKREQRLRKFRELHLMRECAARGEDY--------EKVKLL 59
+ LV S+EE A + ++ +RLR+ +E + +E R ED E+ L
Sbjct: 900 DALVKSSEELLSALQKKKQQEEEAERLRRIQE-EMEKERKRREEDEKRRRKEEEERRMKL 958
Query: 60 EISAEDAERWERKKKRKNPDLGFSDYAAAQLRQYHRLTKQIKPDMETYERLRE 112
E+ A+ + E +KKR++ + AQL + Q + +E R RE
Sbjct: 959 EMEAKRKQEEEERKKREDDEKRIQAEVEAQLARQKEEESQQQAVLEQERRDRE 1011
>gi|16418379 syntaxin 1B [Homo sapiens]
Length = 288
Score = 32.0 bits (71), Expect = 0.36
Identities = 40/179 (22%), Positives = 73/179 (40%), Gaps = 28/179 (15%)
Query: 15 EEGSLAAAAELAAQKREQRLRKFRELHLMRECAARGEDYEK------VKLLEISAEDAER 68
EEG ++A+L +K + + + +M E A Y + LEI+
Sbjct: 102 EEGLNRSSADLRIRKTQHSTLSRKFVEVMTEYNATQSKYRDRCKDRIQRQLEITGRTTTN 161
Query: 69 WERKKKRKNPDLG-FSDYAAAQLRQYHRLTKQIKPDMETYERLREKHGEEFFPTSNSLLH 127
E + ++ L F+D ++ ++TKQ ++ET +H E +
Sbjct: 162 EELEDMLESGKLAIFTD----DIKMDSQMTKQALNEIET------RHNEIIKLET----- 206
Query: 128 GTHVPSTEEIDRMVIDLEKQIEKRDKYSRRRPYNDDADIDYINERNAKFNKKAERFYGK 186
S E+ M +D+ +E + + R YN + +DY+ ER KKA ++ K
Sbjct: 207 -----SIRELHDMFVDMAMLVESQGEMIDRIEYNVEHSVDYV-ERAVSDTKKAVKYQSK 259
>gi|55741709 RNA binding motif protein 25 [Homo sapiens]
Length = 843
Score = 31.6 bits (70), Expect = 0.47
Identities = 36/178 (20%), Positives = 77/178 (43%), Gaps = 15/178 (8%)
Query: 5 AASEVLVDSAEEGSLAAAAELAAQKREQRLRKFRELHLMRECAARGEDYEKVKLLEISAE 64
A E + + EE A + ++R+Q ++ E+ L+RE ++ L ++
Sbjct: 183 ARPETVTNDDEE-----ALDEETKRRDQMIKGAIEV-LIREYSSE---------LNAPSQ 227
Query: 65 DAERWERKKKRKNPDLGFSDYAAAQLRQYHRLTKQIKPDMETYERLREKHGEEFFPTSNS 124
+++ RKKK++ + F + A L Y +TK+ +E E R+ E ++
Sbjct: 228 ESDSHPRKKKKEKKEDIFRRFPVAPLIPYPLITKEDINAIEMEEDKRDLISREISKFRDT 287
Query: 125 LLHGTHVPSTEEIDRMVIDLEKQIEKRDKYSRRRPYNDDADIDYINERNAKFNKKAER 182
+E +R I+ E++ +R++ R + + + ER + ++ ER
Sbjct: 288 HKKLEEEKGKKEKERQEIEKERRERERERERERERREREREREREREREKEKERERER 345
>gi|154759259 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)
isoform 2 [Homo sapiens]
Length = 2472
Score = 31.6 bits (70), Expect = 0.47
Identities = 31/132 (23%), Positives = 61/132 (46%), Gaps = 16/132 (12%)
Query: 23 AELAAQKREQ---RLRKFRELHLMRECAARGEDYEKVKLLEISAEDAERWERKKKRKNPD 79
AE ++R+Q R +F+EL +R + ED + + + AE+ E+W ++K + D
Sbjct: 12 AEDIQERRQQVLDRYHRFKELSTLRR--QKLEDSYRFQFFQRDAEELEKWIQEKLQIASD 69
Query: 80 LGFSDYAAAQ--LRQYHRLTKQIKPDMETYERLREKHGEEFFPTSNSLLHGTHVPSTEEI 137
+ D Q L+++ +++ + +L E T N ++ H S E I
Sbjct: 70 ENYKDPTNLQGKLQKHQAFEAEVQANSGAIVKLDE--------TGNLMISEGHFAS-ETI 120
Query: 138 DRMVIDLEKQIE 149
+++L +Q E
Sbjct: 121 RTRLMELHRQWE 132
>gi|194595509 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)
isoform 1 [Homo sapiens]
Length = 2477
Score = 31.6 bits (70), Expect = 0.47
Identities = 31/132 (23%), Positives = 61/132 (46%), Gaps = 16/132 (12%)
Query: 23 AELAAQKREQ---RLRKFRELHLMRECAARGEDYEKVKLLEISAEDAERWERKKKRKNPD 79
AE ++R+Q R +F+EL +R + ED + + + AE+ E+W ++K + D
Sbjct: 12 AEDIQERRQQVLDRYHRFKELSTLRR--QKLEDSYRFQFFQRDAEELEKWIQEKLQIASD 69
Query: 80 LGFSDYAAAQ--LRQYHRLTKQIKPDMETYERLREKHGEEFFPTSNSLLHGTHVPSTEEI 137
+ D Q L+++ +++ + +L E T N ++ H S E I
Sbjct: 70 ENYKDPTNLQGKLQKHQAFEAEVQANSGAIVKLDE--------TGNLMISEGHFAS-ETI 120
Query: 138 DRMVIDLEKQIE 149
+++L +Q E
Sbjct: 121 RTRLMELHRQWE 132
>gi|188528616 testis specific, 10 [Homo sapiens]
Length = 698
Score = 31.6 bits (70), Expect = 0.47
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 51 EDYEKVKLLEISAEDAERWERKKKRKNPDLGFSDYAAAQLRQYHRLTKQIKPDMETYERL 110
E+ + ++ L + EDAE WE K ++ D ++ +L ++K +++ R
Sbjct: 409 ENRQMMEQLRKANEDAENWENKARQSEAD---NNTLKLELITAEAEGNRLKEKVDSLNRE 465
Query: 111 REKH--GEEFFPTSNSLLHGTHVPSTEEIDRMVIDLEKQIEKRDKYSRR 157
E+H E + + S LH + V EE+ + + EK D S R
Sbjct: 466 VEQHLNAERSYKSQISTLHKSVVKMEEELQK--VQFEKVSALADLSSTR 512
>gi|13376858 testis specific, 10 [Homo sapiens]
Length = 698
Score = 31.6 bits (70), Expect = 0.47
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 51 EDYEKVKLLEISAEDAERWERKKKRKNPDLGFSDYAAAQLRQYHRLTKQIKPDMETYERL 110
E+ + ++ L + EDAE WE K ++ D ++ +L ++K +++ R
Sbjct: 409 ENRQMMEQLRKANEDAENWENKARQSEAD---NNTLKLELITAEAEGNRLKEKVDSLNRE 465
Query: 111 REKH--GEEFFPTSNSLLHGTHVPSTEEIDRMVIDLEKQIEKRDKYSRR 157
E+H E + + S LH + V EE+ + + EK D S R
Sbjct: 466 VEQHLNAERSYKSQISTLHKSVVKMEEELQK--VQFEKVSALADLSSTR 512
>gi|71565160 SMC1 structural maintenance of chromosomes 1-like 2
[Homo sapiens]
Length = 1235
Score = 31.6 bits (70), Expect = 0.47
Identities = 28/123 (22%), Positives = 57/123 (46%), Gaps = 13/123 (10%)
Query: 44 RECAARGEDYEKVKLLEISAEDAER-WERKKKRKNPDLGFS----DYAAAQLRQYHRLTK 98
++C+ + +D +K LE D + W +K+ ++ + A+QL +Y L +
Sbjct: 324 KQCSKQEDD---IKALETELADLDAAWRSFEKQIEEEILHKKRDIELEASQLDRYKELKE 380
Query: 99 QIKPDMETYERLREKHGEEFFPTSNSLL-----HGTHVPSTEEIDRMVIDLEKQIEKRDK 153
Q++ + T + EK E L HG + ++I + D +K+IEK ++
Sbjct: 381 QVRKKVATMTQQLEKLQWEQKTDEERLAFEKRRHGEVQGNLKQIKEQIEDHKKRIEKLEE 440
Query: 154 YSR 156
Y++
Sbjct: 441 YTK 443
Score = 28.9 bits (63), Expect = 3.1
Identities = 29/129 (22%), Positives = 55/129 (42%), Gaps = 4/129 (3%)
Query: 25 LAAQKREQRLRKFRELHLMRECAARGEDYEKVKLLEISAEDAERWERKKKRKNPDLGFSD 84
++ +K ++R + F E+ E GE EK + L+ + EDA+ KKK + +
Sbjct: 143 ISVKKPKERTQFFEEISTSGELI--GEYEEKKRKLQKAEEDAQFNFNKKKNIAAERRQAK 200
Query: 85 YAAAQLRQYHRLTKQIKPDMETYERLREKHGEEFFPTSNSLLHGTHVPSTEEIDRMVIDL 144
+ +Y L +++K + + + H E+ N+ L HV + R +
Sbjct: 201 LEKEEAERYQSLLEELKMNKIQLQLFQLYHNEKKIHLLNTKLE--HVNRDLSVKRESLSH 258
Query: 145 EKQIEKRDK 153
+ I K K
Sbjct: 259 HENIVKARK 267
>gi|239749449 PREDICTED: hypothetical protein [Homo sapiens]
Length = 275
Score = 31.2 bits (69), Expect = 0.62
Identities = 30/140 (21%), Positives = 57/140 (40%), Gaps = 13/140 (9%)
Query: 28 QKREQRLRKFRELHLMRECAARGEDYEKVKLLEISAEDAERWERKKKRKNPDLGFSDYAA 87
+++E+R RK + R+ R E +K + E E+ +R ERK+K++
Sbjct: 90 REKERRKRKKEKKKRERKQRGRRERKKKKERKERERENKQRRERKRKKRR---------- 139
Query: 88 AQLRQYHRLTKQIKPDMETYERLREKHGEEFFPTSNSLLHGTHVPSTEEIDRMVIDLEKQ 147
++ R ++ + + ER R+K +E E +R E++
Sbjct: 140 ---KKKRRKERKREKERGKRERKRKKRKKEEREKKRERNRKERKKERERKERRERKKERK 196
Query: 148 IEKRDKYSRRRPYNDDADID 167
E+R K R++ D D
Sbjct: 197 KERRKKKERKKDRKTDRQTD 216
>gi|48255891 protein kinase C substrate 80K-H isoform 2 [Homo
sapiens]
Length = 525
Score = 31.2 bits (69), Expect = 0.62
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 30 REQRLRKFRELHLMRECAARGEDYEKVKLLEISAEDAERWERKKKRKNPDLGFSDYAAAQ 89
RE++ +K EL A + ++V++L E+AE+ ER+ K ++ L AAA+
Sbjct: 152 REEKQKKLIELQ-----AGKKSLEDQVEMLRTVKEEAEKPEREAKEQHQKLWEEQLAAAK 206
Query: 90 LRQYHRLT----KQIKPDME 105
+Q L K++ DM+
Sbjct: 207 AQQEQELAADAFKELDDDMD 226
>gi|48255889 protein kinase C substrate 80K-H isoform 1 [Homo
sapiens]
Length = 528
Score = 31.2 bits (69), Expect = 0.62
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 30 REQRLRKFRELHLMRECAARGEDYEKVKLLEISAEDAERWERKKKRKNPDLGFSDYAAAQ 89
RE++ +K EL A + ++V++L E+AE+ ER+ K ++ L AAA+
Sbjct: 152 REEKQKKLIELQ-----AGKKSLEDQVEMLRTVKEEAEKPEREAKEQHQKLWEEQLAAAK 206
Query: 90 LRQYHRLT----KQIKPDME 105
+Q L K++ DM+
Sbjct: 207 AQQEQELAADAFKELDDDMD 226
>gi|4503293 DEAH (Asp-Glu-Ala-His) box polypeptide 16 [Homo sapiens]
Length = 1041
Score = 31.2 bits (69), Expect = 0.62
Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Query: 13 SAEEGSLAAAAELAAQKREQRLRKFRELHLMRECAARGEDYEKVKLLEISAEDAE-RWER 71
S E S A ++ +K+ + LRK RE E + +G+ + ++E WER
Sbjct: 107 SEETVSRAGSSLQKKRKKRKHLRKKREEEEEEEASEKGKKKTGGSKQQTEKPESEDEWER 166
Query: 72 KKKRKNPDLGFSDYAAAQLRQYHR-LTKQI--KPDMETYERLREK 113
++ + DL D A ++RQ + T+ + + D + YE +++
Sbjct: 167 TERERLQDLEERDAFAERVRQRDKDRTRNVLERSDKKAYEEAQKR 211
>gi|239754909 PREDICTED: hypothetical protein [Homo sapiens]
Length = 245
Score = 30.8 bits (68), Expect = 0.81
Identities = 36/181 (19%), Positives = 76/181 (41%), Gaps = 12/181 (6%)
Query: 11 VDSAEEGSLAAAAELAAQKREQRLRKF-RELHLMRECAARGEDYEKVK--------LLEI 61
+++ +EG +E ++RE+ RK RE RE + + E+ K E
Sbjct: 45 IETRKEGKKERESERKKERREREKRKREREKERKRERGKKEKKGERKKEERERKKRRREK 104
Query: 62 SAEDAERWERKKKRKNPDLGFSDYAAAQLRQYHRLTKQIKPDMETYERLREKHGEEFFPT 121
++ E E++KK++ + G + + ++ R ++ + + + ER +E+ +E
Sbjct: 105 ENKEGEEKEKRKKKEKKERG---RTSKEGKERERKEERKREERKERERKKEEREKERERK 161
Query: 122 SNSLLHGTHVPSTEEIDRMVIDLEKQIEKRDKYSRRRPYNDDADIDYINERNAKFNKKAE 181
V EE + E++ +R++ R++ + ER K +K E
Sbjct: 162 ERKKRERKQVGEKEEERKEKERKERKKRERNRKERKKERERKERRERKKERKKKEERKKE 221
Query: 182 R 182
R
Sbjct: 222 R 222
>gi|68161546 misshapen/NIK-related kinase isoform 4 [Homo sapiens]
Length = 1312
Score = 30.8 bits (68), Expect = 0.81
Identities = 24/100 (24%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Query: 28 QKREQRLRKFRELHLMRECAARGEDYEKVKLLEISAEDAERWERKKKRKNPDLGFSDYAA 87
Q+RE+ RK +E +E R ED + ++ E AER + K+++ + S+
Sbjct: 412 QRREREQRKLQE----KEQQRRLEDMQALRREE-ERRQAEREQEYKRKQLEEQRQSERLQ 466
Query: 88 AQLRQYHRLTKQIKPDMETYERLREKHGEEFFPTSNSLLH 127
QL+Q H K ++ + ++L+++ ++ P L+
Sbjct: 467 RQLQQEHAYLKSLQ-QQQQQQQLQKQQQQQLLPGDRKPLY 505
>gi|24850117 misshapen/NIK-related kinase isoform 2 [Homo sapiens]
Length = 1303
Score = 30.8 bits (68), Expect = 0.81
Identities = 24/100 (24%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Query: 28 QKREQRLRKFRELHLMRECAARGEDYEKVKLLEISAEDAERWERKKKRKNPDLGFSDYAA 87
Q+RE+ RK +E +E R ED + ++ E AER + K+++ + S+
Sbjct: 412 QRREREQRKLQE----KEQQRRLEDMQALRREE-ERRQAEREQEYKRKQLEEQRQSERLQ 466
Query: 88 AQLRQYHRLTKQIKPDMETYERLREKHGEEFFPTSNSLLH 127
QL+Q H K ++ + ++L+++ ++ P L+
Sbjct: 467 RQLQQEHAYLKSLQ-QQQQQQQLQKQQQQQLLPGDRKPLY 505
>gi|27436917 misshapen/NIK-related kinase isoform 3 [Homo sapiens]
Length = 1332
Score = 30.8 bits (68), Expect = 0.81
Identities = 24/100 (24%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Query: 28 QKREQRLRKFRELHLMRECAARGEDYEKVKLLEISAEDAERWERKKKRKNPDLGFSDYAA 87
Q+RE+ RK +E +E R ED + ++ E AER + K+++ + S+
Sbjct: 412 QRREREQRKLQE----KEQQRRLEDMQALRREE-ERRQAEREQEYKRKQLEEQRQSERLQ 466
Query: 88 AQLRQYHRLTKQIKPDMETYERLREKHGEEFFPTSNSLLH 127
QL+Q H K ++ + ++L+++ ++ P L+
Sbjct: 467 RQLQQEHAYLKSLQ-QQQQQQQLQKQQQQQLLPGDRKPLY 505
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.130 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,884,198
Number of Sequences: 37866
Number of extensions: 294564
Number of successful extensions: 1146
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 1088
Number of HSP's gapped (non-prelim): 134
length of query: 201
length of database: 18,247,518
effective HSP length: 97
effective length of query: 104
effective length of database: 14,574,516
effective search space: 1515749664
effective search space used: 1515749664
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.