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Search of human proteins with 45827706
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|45827706 quaking homolog, KH domain RNA binding isoform
HQK-5 [Homo sapiens]
(341 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|45827706 quaking homolog, KH domain RNA binding isoform HQK-5... 683 0.0
gi|45827712 quaking homolog, KH domain RNA binding isoform HQK-7... 625 e-179
gi|45827708 quaking homolog, KH domain RNA binding isoform HQK-6... 625 e-179
gi|45827710 quaking homolog, KH domain RNA binding isoform HQK-7... 623 e-179
gi|189217895 KH domain-containing, RNA-binding, signal transduct... 141 1e-33
gi|5730073 KH domain containing, RNA binding, signal transductio... 137 1e-32
gi|5730027 KH domain containing, RNA binding, signal transductio... 134 2e-31
gi|42544123 splicing factor 1 isoform 3 [Homo sapiens] 100 2e-21
gi|42544125 splicing factor 1 isoform 2 [Homo sapiens] 100 2e-21
gi|42544130 splicing factor 1 isoform 1 [Homo sapiens] 100 2e-21
gi|55741675 hypothetical protein LOC22889 [Homo sapiens] 44 2e-04
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 39 0.005
gi|93004092 nuclear factor I/B [Homo sapiens] 39 0.007
gi|20986497 mitogen-activated protein kinase 7 isoform 1 [Homo s... 39 0.009
gi|209529736 mitogen-activated protein kinase 7 isoform 1 [Homo ... 39 0.009
gi|209529734 mitogen-activated protein kinase 7 isoform 1 [Homo ... 39 0.009
gi|20986499 mitogen-activated protein kinase 7 isoform 2 [Homo s... 39 0.009
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 38 0.015
gi|91208418 transcription elongation regulator 1 isoform 2 [Homo... 38 0.015
gi|21327715 transcription elongation regulator 1 isoform 1 [Homo... 38 0.015
gi|40353729 Ras and Rab interactor 3 [Homo sapiens] 37 0.019
gi|38788260 bromodomain PHD finger transcription factor isoform ... 37 0.025
gi|38788274 bromodomain PHD finger transcription factor isoform ... 37 0.025
gi|163965366 nascent polypeptide-associated complex alpha subuni... 37 0.025
gi|19111150 angiomotin isoform 2 [Homo sapiens] 36 0.043
gi|166064029 angiomotin isoform 1 [Homo sapiens] 36 0.043
gi|10863899 numb homolog (Drosophila)-like [Homo sapiens] 36 0.043
gi|33286442 BCL6 co-repressor-like 1 [Homo sapiens] 36 0.057
gi|160707881 formin 2 [Homo sapiens] 35 0.074
gi|139394646 iroquois homeobox protein 5 [Homo sapiens] 35 0.074
>gi|45827706 quaking homolog, KH domain RNA binding isoform HQK-5
[Homo sapiens]
Length = 341
Score = 683 bits (1762), Expect = 0.0
Identities = 341/341 (100%), Positives = 341/341 (100%)
Query: 1 MVGEMETKEKPKPTPDYLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYNDT 60
MVGEMETKEKPKPTPDYLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYNDT
Sbjct: 1 MVGEMETKEKPKPTPDYLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYNDT 60
Query: 61 LNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCK 120
LNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCK
Sbjct: 61 LNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCK 120
Query: 121 IMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLV 180
IMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLV
Sbjct: 121 IMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLV 180
Query: 181 PAAEGEDSLKKMQLMELAILNGTYRDANIKSPALAFSLAATAQAAPRIITGPAPVLPPAA 240
PAAEGEDSLKKMQLMELAILNGTYRDANIKSPALAFSLAATAQAAPRIITGPAPVLPPAA
Sbjct: 181 PAAEGEDSLKKMQLMELAILNGTYRDANIKSPALAFSLAATAQAAPRIITGPAPVLPPAA 240
Query: 241 LRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAGLIYTPYEYPYTLAPATSI 300
LRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAGLIYTPYEYPYTLAPATSI
Sbjct: 241 LRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAGLIYTPYEYPYTLAPATSI 300
Query: 301 LEYPIEPSGVLGAVATKVRRHDMRVHPYQRIVTADRAATGN 341
LEYPIEPSGVLGAVATKVRRHDMRVHPYQRIVTADRAATGN
Sbjct: 301 LEYPIEPSGVLGAVATKVRRHDMRVHPYQRIVTADRAATGN 341
>gi|45827712 quaking homolog, KH domain RNA binding isoform HQK-7B
[Homo sapiens]
Length = 319
Score = 625 bits (1613), Expect = e-179
Identities = 312/312 (100%), Positives = 312/312 (100%)
Query: 1 MVGEMETKEKPKPTPDYLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYNDT 60
MVGEMETKEKPKPTPDYLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYNDT
Sbjct: 1 MVGEMETKEKPKPTPDYLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYNDT 60
Query: 61 LNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCK 120
LNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCK
Sbjct: 61 LNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCK 120
Query: 121 IMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLV 180
IMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLV
Sbjct: 121 IMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLV 180
Query: 181 PAAEGEDSLKKMQLMELAILNGTYRDANIKSPALAFSLAATAQAAPRIITGPAPVLPPAA 240
PAAEGEDSLKKMQLMELAILNGTYRDANIKSPALAFSLAATAQAAPRIITGPAPVLPPAA
Sbjct: 181 PAAEGEDSLKKMQLMELAILNGTYRDANIKSPALAFSLAATAQAAPRIITGPAPVLPPAA 240
Query: 241 LRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAGLIYTPYEYPYTLAPATSI 300
LRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAGLIYTPYEYPYTLAPATSI
Sbjct: 241 LRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAGLIYTPYEYPYTLAPATSI 300
Query: 301 LEYPIEPSGVLG 312
LEYPIEPSGVLG
Sbjct: 301 LEYPIEPSGVLG 312
>gi|45827708 quaking homolog, KH domain RNA binding isoform HQK-6
[Homo sapiens]
Length = 319
Score = 625 bits (1613), Expect = e-179
Identities = 312/312 (100%), Positives = 312/312 (100%)
Query: 1 MVGEMETKEKPKPTPDYLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYNDT 60
MVGEMETKEKPKPTPDYLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYNDT
Sbjct: 1 MVGEMETKEKPKPTPDYLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYNDT 60
Query: 61 LNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCK 120
LNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCK
Sbjct: 61 LNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCK 120
Query: 121 IMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLV 180
IMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLV
Sbjct: 121 IMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLV 180
Query: 181 PAAEGEDSLKKMQLMELAILNGTYRDANIKSPALAFSLAATAQAAPRIITGPAPVLPPAA 240
PAAEGEDSLKKMQLMELAILNGTYRDANIKSPALAFSLAATAQAAPRIITGPAPVLPPAA
Sbjct: 181 PAAEGEDSLKKMQLMELAILNGTYRDANIKSPALAFSLAATAQAAPRIITGPAPVLPPAA 240
Query: 241 LRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAGLIYTPYEYPYTLAPATSI 300
LRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAGLIYTPYEYPYTLAPATSI
Sbjct: 241 LRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAGLIYTPYEYPYTLAPATSI 300
Query: 301 LEYPIEPSGVLG 312
LEYPIEPSGVLG
Sbjct: 301 LEYPIEPSGVLG 312
>gi|45827710 quaking homolog, KH domain RNA binding isoform HQK-7
[Homo sapiens]
Length = 325
Score = 623 bits (1607), Expect = e-179
Identities = 311/311 (100%), Positives = 311/311 (100%)
Query: 1 MVGEMETKEKPKPTPDYLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYNDT 60
MVGEMETKEKPKPTPDYLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYNDT
Sbjct: 1 MVGEMETKEKPKPTPDYLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYNDT 60
Query: 61 LNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCK 120
LNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCK
Sbjct: 61 LNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCK 120
Query: 121 IMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLV 180
IMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLV
Sbjct: 121 IMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLV 180
Query: 181 PAAEGEDSLKKMQLMELAILNGTYRDANIKSPALAFSLAATAQAAPRIITGPAPVLPPAA 240
PAAEGEDSLKKMQLMELAILNGTYRDANIKSPALAFSLAATAQAAPRIITGPAPVLPPAA
Sbjct: 181 PAAEGEDSLKKMQLMELAILNGTYRDANIKSPALAFSLAATAQAAPRIITGPAPVLPPAA 240
Query: 241 LRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAGLIYTPYEYPYTLAPATSI 300
LRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAGLIYTPYEYPYTLAPATSI
Sbjct: 241 LRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAGLIYTPYEYPYTLAPATSI 300
Query: 301 LEYPIEPSGVL 311
LEYPIEPSGVL
Sbjct: 301 LEYPIEPSGVL 311
>gi|189217895 KH domain-containing, RNA-binding, signal
transduction-associated protein 2 [Homo sapiens]
Length = 349
Score = 141 bits (355), Expect = 1e-33
Identities = 103/287 (35%), Positives = 148/287 (51%), Gaps = 33/287 (11%)
Query: 17 YLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYNDTLNGSTEKRSAELPDAV 76
YL +LM +K + P+F H RLL EEI + + +G E + D +
Sbjct: 6 YLPELMAEKDSLD--PSFV----HASRLLAEEIEKFQGS------DGKKEDEEKKYLDVI 53
Query: 77 G-PIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKE 135
++L E++ +PVK+YP FNFVG++LGPRG + K+L+ ETG K+ + GKGSMRDK KE
Sbjct: 54 SNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKE 113
Query: 136 EQNR--GKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQ 193
E+ R G+ + HL+++LHVLI V A ++ A+EE+KK LVP + D +++ Q
Sbjct: 114 EELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQ 171
Query: 194 LMELAILNGTY---RDANIKSPALAFSLAATAQAAPRIITGPAPVLPPAALRTPTPAGPT 250
L EL+ LNG+ R I+ + +A TA + R G P PP TP G T
Sbjct: 172 LRELSYLNGSEDSGRGRGIRGRGI--RIAPTAPSRGR--GGAIPPPPPPGRGVLTPRGST 227
Query: 251 IMPLIRQIQTAVMPNGTPHPTAAIVP-------PGPEAGLIYTPYEY 290
+ + + G P P A P P P A Y Y Y
Sbjct: 228 VTR--GALPVPPVARGVPTPRARGAPTVPGYRAPPPPAHEAYEEYGY 272
>gi|5730073 KH domain containing, RNA binding, signal transduction
associated 3 [Homo sapiens]
Length = 346
Score = 137 bits (346), Expect = 1e-32
Identities = 101/286 (35%), Positives = 149/286 (52%), Gaps = 31/286 (10%)
Query: 17 YLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYNDTLNGSTEKRSAELPDAV 76
YL +LM +K + F H RL+++EI + +K G E++ ++ +
Sbjct: 5 YLPELMAEKDSLDPS------FTHALRLVNQEIEKFQKG------EGKDEEKYIDV--VI 50
Query: 77 GPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEE 136
++L +K+ +PVK++P FNFVG++LGPRG + K+L+ ET K+ + GKGSMRDK KEE
Sbjct: 51 NKNMKLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEE 110
Query: 137 QNR--GKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQL 194
+ R G+ + HLN+DLHVLI V A ++ A+EE+KK L+P + D +++ QL
Sbjct: 111 ELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIP--DYNDEIRQAQL 168
Query: 195 MELAILNGTYRDANIKSPALAFSLAATAQAAPRIITG-------PAPVLPPAALRTPTPA 247
EL LNG +A++ +L AP I G P V+ P TPTP
Sbjct: 169 QELTYLNGGSENADVPVVRGKPTLRTRGVPAPAITRGRGGVTARPVGVVVPRG--TPTPR 226
Query: 248 G--PTIMPLIR-QIQTAVMPNGTPHPTAAIVPPGPEAGLIYTPYEY 290
G T P+ R + G P PT PP P Y Y+Y
Sbjct: 227 GVLSTRGPVSRGRGLLTPRARGVP-PTGYRPPPPPPTQETYGEYDY 271
>gi|5730027 KH domain containing, RNA binding, signal transduction
associated 1 [Homo sapiens]
Length = 443
Score = 134 bits (336), Expect = 2e-31
Identities = 107/299 (35%), Positives = 143/299 (47%), Gaps = 31/299 (10%)
Query: 10 KPKPTPDYLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYNDTLNGSTEKRS 69
K +P YL +LM +K + F H +LL EI +++K G ++K
Sbjct: 96 KMEPENKYLPELMAEKDSLDPS------FTHAMQLLTAEIEKIQK--------GDSKKDD 141
Query: 70 AE--LPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKG 127
E L ++L+E++ +PVK+YP FNFVG+ILGP+G T K+L+ ETG KI V GKG
Sbjct: 142 EENYLDLFSHKNMKLKERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKG 201
Query: 128 SMRDKKKEEQNR--GKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEG 185
SMRDK KEE+ R G P + HLN DLHV I V A + A+EEVKK LVP +
Sbjct: 202 SMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DM 259
Query: 186 EDSLKKMQLMELAILNGTYRDANIKSPALAFSLAATAQAAPRIITGPAPVLPPAALRTPT 245
D + + Q +EL+ LNG + + + A P + G P AL T
Sbjct: 260 MDDICQEQFLELSYLNGVPEPS--RGRGVPVRGRGAAPPPPPVPRGRGVGPPRGALVRGT 317
Query: 246 PAGPTI---MPLIRQIQTAVMPNGTPHPTA------AIVPPGPEAGLIYTPYEYPYTLA 295
P I + R + G P P A I P P A Y Y Y T A
Sbjct: 318 PVRGAITRGATVTRGVPPPPTVRGAPAPRARTAGIQRIPLPPPPAPETYEEYGYDDTYA 376
>gi|42544123 splicing factor 1 isoform 3 [Homo sapiens]
Length = 548
Score = 100 bits (248), Expect = 2e-21
Identities = 63/178 (35%), Positives = 98/178 (55%), Gaps = 15/178 (8%)
Query: 37 IFNHLERLLDEEISRVRKDMYNDTLNGSTEKRSAELP-----DAVGPIVQLQEKLYVPVK 91
I+N + L+ R RK + + N TE + D P ++ +K+ +P
Sbjct: 86 IYNSEGKRLNTREFRTRKKLEEERHNLITEMVALNPDFKPPADYKPPATRVSDKVMIPQD 145
Query: 92 EYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDL 151
EYP+ NFVG ++GPRG T K +E E KIM+RGKGS+++ K ++ E +E L
Sbjct: 146 EYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGE--DEPL 203
Query: 152 HVLITVEDAQNRAEIKLKRAVEEVKKLL---VPAAEGEDSLKKMQLMELAILNGTYRD 206
H L+T +N +K+AVE+++ +L + E ++ L+KMQL ELA LNGT R+
Sbjct: 204 HALVTANTMEN-----VKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLRE 256
>gi|42544125 splicing factor 1 isoform 2 [Homo sapiens]
Length = 638
Score = 100 bits (248), Expect = 2e-21
Identities = 63/178 (35%), Positives = 98/178 (55%), Gaps = 15/178 (8%)
Query: 37 IFNHLERLLDEEISRVRKDMYNDTLNGSTEKRSAELP-----DAVGPIVQLQEKLYVPVK 91
I+N + L+ R RK + + N TE + D P ++ +K+ +P
Sbjct: 86 IYNSEGKRLNTREFRTRKKLEEERHNLITEMVALNPDFKPPADYKPPATRVSDKVMIPQD 145
Query: 92 EYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDL 151
EYP+ NFVG ++GPRG T K +E E KIM+RGKGS+++ K ++ E +E L
Sbjct: 146 EYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGE--DEPL 203
Query: 152 HVLITVEDAQNRAEIKLKRAVEEVKKLL---VPAAEGEDSLKKMQLMELAILNGTYRD 206
H L+T +N +K+AVE+++ +L + E ++ L+KMQL ELA LNGT R+
Sbjct: 204 HALVTANTMEN-----VKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLRE 256
>gi|42544130 splicing factor 1 isoform 1 [Homo sapiens]
Length = 639
Score = 100 bits (248), Expect = 2e-21
Identities = 63/178 (35%), Positives = 98/178 (55%), Gaps = 15/178 (8%)
Query: 37 IFNHLERLLDEEISRVRKDMYNDTLNGSTEKRSAELP-----DAVGPIVQLQEKLYVPVK 91
I+N + L+ R RK + + N TE + D P ++ +K+ +P
Sbjct: 86 IYNSEGKRLNTREFRTRKKLEEERHNLITEMVALNPDFKPPADYKPPATRVSDKVMIPQD 145
Query: 92 EYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDL 151
EYP+ NFVG ++GPRG T K +E E KIM+RGKGS+++ K ++ E +E L
Sbjct: 146 EYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGE--DEPL 203
Query: 152 HVLITVEDAQNRAEIKLKRAVEEVKKLL---VPAAEGEDSLKKMQLMELAILNGTYRD 206
H L+T +N +K+AVE+++ +L + E ++ L+KMQL ELA LNGT R+
Sbjct: 204 HALVTANTMEN-----VKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLRE 256
>gi|55741675 hypothetical protein LOC22889 [Homo sapiens]
Length = 614
Score = 44.3 bits (103), Expect = 2e-04
Identities = 67/301 (22%), Positives = 121/301 (40%), Gaps = 55/301 (18%)
Query: 5 METKEKPKPTPDYLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYND----- 59
M T+EK K P P + + L+D ++R+++ + N
Sbjct: 144 MTTEEKAKVGP-------------GDRPLYLHVQGQTRELVDRAVNRIKEIITNGVVKAA 190
Query: 60 -----TLNGST------EKRSAELPDAVG--PIVQ-----LQEKLYVPVKE-YPDFNFVG 100
T NG+T A+L AV P Q +Q+KL+V ++ P FN
Sbjct: 191 TGTSPTFNGATVTVYHQPAPIAQLSPAVSQKPPFQSGMHYVQDKLFVGLEHAVPTFNVKE 250
Query: 101 RILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDA 160
++ GP + ++ ETG K+ +RGKGS + + +P +++ I+
Sbjct: 251 KVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEP--------MYIYISHPKP 302
Query: 161 QNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRDANIKS--PALAFSL 218
+ A A +++ + L+ E S Q+ L G + + I S P +
Sbjct: 303 EGLA------AAKKLCENLLQTVHAEYSRFVNQINTAVPLPGYTQPSAISSVPPQPPYYP 356
Query: 219 AATAQAAPRIITGP-APVLPPAALRTPTPAGPTIMP-LIRQIQTAVMPNGTPHPTAAIVP 276
+ Q+ ++ P PV PP + + P ++ P ++ + T V P T +P + P
Sbjct: 357 SNGYQSGYPVVPPPQQPVQPPYGVPSIVPPAVSLAPGVLPALPTGVPPVPTQYPITQVQP 416
Query: 277 P 277
P
Sbjct: 417 P 417
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 39.3 bits (90), Expect = 0.005
Identities = 30/73 (41%), Positives = 36/73 (49%), Gaps = 12/73 (16%)
Query: 219 AATAQAAPRIITGPAPVLPPAALRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVP-- 276
AAT +AAP + PAP PP A+ TP P G ++Q Q A P P P AA P
Sbjct: 610 AATGEAAPVLTVQPAPQAPP-AVSTPLPLG------LQQPQ-AQQPPQAPTPQAAAPPQA 661
Query: 277 --PGPEAGLIYTP 287
P P GL +P
Sbjct: 662 TTPQPSPGLASSP 674
Score = 30.8 bits (68), Expect = 1.8
Identities = 26/82 (31%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 228 IITGPAPVLPPAALRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAGLIYTP 287
+I V PPA+ PT GP PL Q Q P P P A +PP + + +
Sbjct: 836 VIQNQLGVPPPASNPAPTAPGPPQPPLRPQSQ----PPEGPLPPAPHLPPSSTSSAVASS 891
Query: 288 YEYPYTL-APATSILEYPIEPS 308
E L AP S + PS
Sbjct: 892 SETSSRLPAPTPSDFQLQFPPS 913
Score = 28.9 bits (63), Expect = 6.9
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 238 PAALRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEA 281
PAA +T T GP P + + P+GTP + P P A
Sbjct: 980 PAAPQTSTSLGPLTSPAASVLVSGQAPSGTPTAPSHAPAPAPMA 1023
>gi|93004092 nuclear factor I/B [Homo sapiens]
Length = 420
Score = 38.9 bits (89), Expect = 0.007
Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 16/106 (15%)
Query: 205 RDANIKSPALA-------FSLAATAQAAPRIITGPAPVLPPAALRTPTPAGPTIMPLIRQ 257
RD ++ SP FS A+ ++PR+ T P + P P + +
Sbjct: 306 RDQDMSSPTTMKKPEKPLFSSASPQDSSPRLSTFP---------QHHHPGIPGVAHSVIS 356
Query: 258 IQTAVMPNGTPHPTAAIVPPGPEAGLIYTPYEYPYTLAPATSILEY 303
+T P+ P PT AI+PP P + + YP L P ++ Y
Sbjct: 357 TRTPPPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNY 402
>gi|20986497 mitogen-activated protein kinase 7 isoform 1 [Homo
sapiens]
Length = 816
Score = 38.5 bits (88), Expect = 0.009
Identities = 35/103 (33%), Positives = 46/103 (44%), Gaps = 16/103 (15%)
Query: 224 AAPRIITGPAPVLPPAALRTPT-----PAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPG 278
AAP + + PAP P TP P GP P Q Q+A +G P P A PPG
Sbjct: 579 AAPALTSVPAPAPAPTPTPTPVQPTSPPPGPVAQPTGPQPQSAGSTSG-PVPQPACPPPG 637
Query: 279 P------EAGLIYTPYEYPYTLAPATSIL--EYPIEPSGVLGA 313
P G I P P +A +TS+L + + P G+ G+
Sbjct: 638 PAPHPTGPPGPI--PVPAPPQIATSTSLLAAQSLVPPPGLPGS 678
>gi|209529736 mitogen-activated protein kinase 7 isoform 1 [Homo
sapiens]
Length = 816
Score = 38.5 bits (88), Expect = 0.009
Identities = 35/103 (33%), Positives = 46/103 (44%), Gaps = 16/103 (15%)
Query: 224 AAPRIITGPAPVLPPAALRTPT-----PAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPG 278
AAP + + PAP P TP P GP P Q Q+A +G P P A PPG
Sbjct: 579 AAPALTSVPAPAPAPTPTPTPVQPTSPPPGPVAQPTGPQPQSAGSTSG-PVPQPACPPPG 637
Query: 279 P------EAGLIYTPYEYPYTLAPATSIL--EYPIEPSGVLGA 313
P G I P P +A +TS+L + + P G+ G+
Sbjct: 638 PAPHPTGPPGPI--PVPAPPQIATSTSLLAAQSLVPPPGLPGS 678
>gi|209529734 mitogen-activated protein kinase 7 isoform 1 [Homo
sapiens]
Length = 816
Score = 38.5 bits (88), Expect = 0.009
Identities = 35/103 (33%), Positives = 46/103 (44%), Gaps = 16/103 (15%)
Query: 224 AAPRIITGPAPVLPPAALRTPT-----PAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPG 278
AAP + + PAP P TP P GP P Q Q+A +G P P A PPG
Sbjct: 579 AAPALTSVPAPAPAPTPTPTPVQPTSPPPGPVAQPTGPQPQSAGSTSG-PVPQPACPPPG 637
Query: 279 P------EAGLIYTPYEYPYTLAPATSIL--EYPIEPSGVLGA 313
P G I P P +A +TS+L + + P G+ G+
Sbjct: 638 PAPHPTGPPGPI--PVPAPPQIATSTSLLAAQSLVPPPGLPGS 678
>gi|20986499 mitogen-activated protein kinase 7 isoform 2 [Homo
sapiens]
Length = 677
Score = 38.5 bits (88), Expect = 0.009
Identities = 35/103 (33%), Positives = 46/103 (44%), Gaps = 16/103 (15%)
Query: 224 AAPRIITGPAPVLPPAALRTPT-----PAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPG 278
AAP + + PAP P TP P GP P Q Q+A +G P P A PPG
Sbjct: 440 AAPALTSVPAPAPAPTPTPTPVQPTSPPPGPVAQPTGPQPQSAGSTSG-PVPQPACPPPG 498
Query: 279 P------EAGLIYTPYEYPYTLAPATSIL--EYPIEPSGVLGA 313
P G I P P +A +TS+L + + P G+ G+
Sbjct: 499 PAPHPTGPPGPI--PVPAPPQIATSTSLLAAQSLVPPPGLPGS 539
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 37.7 bits (86), Expect = 0.015
Identities = 22/59 (37%), Positives = 24/59 (40%)
Query: 221 TAQAAPRIITGPAPVLPPAALRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGP 279
T+ A P GP P PPA P A P P T G P P AA+ PGP
Sbjct: 138 TSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGP 196
>gi|91208418 transcription elongation regulator 1 isoform 2 [Homo
sapiens]
Length = 1077
Score = 37.7 bits (86), Expect = 0.015
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
Query: 207 ANIKSPALAFSLAATAQAAPRIITGPAPVLPPAALRTPTPA---GPTIMPLIRQIQTAVM 263
A +++ A+ S T+ AP + T + P + T T A T+ Q QT
Sbjct: 249 AQVQAQAVGASTPTTSSPAPAVSTSTSSSTPSSTTSTTTTATSVAQTVSTPTTQDQTPSS 308
Query: 264 PNGTPHPTAAIVPPGPEAGLIYT-PYEYPYTLAPA 297
PT ++ P P A + T P +P TL PA
Sbjct: 309 AVSVATPTVSVSTPAPTATPVQTVPQPHPQTLPPA 343
>gi|21327715 transcription elongation regulator 1 isoform 1 [Homo
sapiens]
Length = 1098
Score = 37.7 bits (86), Expect = 0.015
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
Query: 207 ANIKSPALAFSLAATAQAAPRIITGPAPVLPPAALRTPTPA---GPTIMPLIRQIQTAVM 263
A +++ A+ S T+ AP + T + P + T T A T+ Q QT
Sbjct: 249 AQVQAQAVGASTPTTSSPAPAVSTSTSSSTPSSTTSTTTTATSVAQTVSTPTTQDQTPSS 308
Query: 264 PNGTPHPTAAIVPPGPEAGLIYT-PYEYPYTLAPA 297
PT ++ P P A + T P +P TL PA
Sbjct: 309 AVSVATPTVSVSTPAPTATPVQTVPQPHPQTLPPA 343
>gi|40353729 Ras and Rab interactor 3 [Homo sapiens]
Length = 985
Score = 37.4 bits (85), Expect = 0.019
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 212 PALAFSLAATAQAAPRIITGPAPVLPPAALRTPTPAGPTIMPLIRQIQTAVMPNGTPHPT 271
P + + + T++ APR P PVLP L+ +PA P ++P + +P P P
Sbjct: 263 PPTSDATSPTSRWAPRRPPPPPPVLP---LQPCSPAQPPVLPALAPAPACPLPTSPPVPA 319
Query: 272 AAIVP--PGP 279
+ P PGP
Sbjct: 320 PHVTPHAPGP 329
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 37.0 bits (84), Expect = 0.025
Identities = 48/149 (32%), Positives = 63/149 (42%), Gaps = 28/149 (18%)
Query: 120 KIMVRGKGSMRDKKKEE---QNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVK 176
KI K + + +K+EE Q R K N L+ L+ Q RAEI KRA+ + K
Sbjct: 2564 KIDKEEKQAAKKRKREESVEQKRSKQNATKLS----ALLFKHKEQLRAEILKKRALLD-K 2618
Query: 177 KLLVPAAEGEDSLKKMQLMELAILNGTYRDANIKSPALAFSLA-ATAQAAPRIITGPAPV 235
L + E ++ LK RD IK LA ATA AAP PAP
Sbjct: 2619 DLQI---EVQEELK--------------RDLKIKKEKDLMQLAQATAVAAPCPPVTPAPP 2661
Query: 236 LPPAALRTPTPAGPTIMPLIRQIQTAVMP 264
PPA P+P P + + T +P
Sbjct: 2662 APPAP--PPSPPPPPAVQHTGLLSTPTLP 2688
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 37.0 bits (84), Expect = 0.025
Identities = 48/149 (32%), Positives = 63/149 (42%), Gaps = 28/149 (18%)
Query: 120 KIMVRGKGSMRDKKKEE---QNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVK 176
KI K + + +K+EE Q R K N L+ L+ Q RAEI KRA+ + K
Sbjct: 2581 KIDKEEKQAAKKRKREESVEQKRSKQNATKLS----ALLFKHKEQLRAEILKKRALLD-K 2635
Query: 177 KLLVPAAEGEDSLKKMQLMELAILNGTYRDANIKSPALAFSLA-ATAQAAPRIITGPAPV 235
L + E ++ LK RD IK LA ATA AAP PAP
Sbjct: 2636 DLQI---EVQEELK--------------RDLKIKKEKDLMQLAQATAVAAPCPPVTPAPP 2678
Query: 236 LPPAALRTPTPAGPTIMPLIRQIQTAVMP 264
PPA P+P P + + T +P
Sbjct: 2679 APPAP--PPSPPPPPAVQHTGLLSTPTLP 2705
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 37.0 bits (84), Expect = 0.025
Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 13/101 (12%)
Query: 210 KSPALAFSLAATAQAAPRIITGPAPVLPPAALRTPTPAGPTIMPLIRQIQTAVMPNGTPH 269
K+PA+ A A + + + P V P P+P I P + T+ P P
Sbjct: 1560 KTPAIPTPKEAPATPSSKEASSPPAVTPSTYKGAPSPKELLIPPAV----TSPSPKEAPT 1615
Query: 270 PTAAIVPPGPEAGLIYTPYEYPYTLAPATSILEYPIEPSGV 310
P A+ PP PE G P T AP + P+ PS +
Sbjct: 1616 P-PAVTPPSPEKG--------PATPAPKGTPTSPPVTPSSL 1647
Score = 31.2 bits (69), Expect = 1.4
Identities = 23/80 (28%), Positives = 29/80 (36%), Gaps = 8/80 (10%)
Query: 226 PRIITGPAPVLPPAALRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTA-----AIVPPGPE 280
P T P+P PA TP+P G P + P TP P A PP P+
Sbjct: 988 PPAATPPSPKGGPA---TPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPK 1044
Query: 281 AGLIYTPYEYPYTLAPATSI 300
TP PA ++
Sbjct: 1045 GSPAATPLPKGAPTTPAATL 1064
Score = 30.4 bits (67), Expect = 2.4
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 232 PAPVLPPA-ALRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAG 282
PAP PA ++ + +P P + I + P G P P AA PP P+ G
Sbjct: 903 PAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAA-TPPSPKGG 953
>gi|19111150 angiomotin isoform 2 [Homo sapiens]
Length = 675
Score = 36.2 bits (82), Expect = 0.043
Identities = 30/84 (35%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 207 ANIKSPALAFSLAATAQAAPRIITGPAPVLPPAALRTPTP-AGPTIMPLIRQIQT---AV 262
A++ S A AA A A PAPV PA + P P A P Q T AV
Sbjct: 542 ASVASAAAVAPSAAAAAAVQVAPAAPAPVPAPALVPVPAPAAAQASAPAQTQAPTSAPAV 601
Query: 263 MPNGTPHPTAAI----VPPGPEAG 282
P P PT A+ VP P G
Sbjct: 602 APTPAPTPTPAVAQAEVPASPATG 625
Score = 28.5 bits (62), Expect = 9.1
Identities = 31/116 (26%), Positives = 41/116 (35%), Gaps = 17/116 (14%)
Query: 215 AFSLAATAQAAPRIITGPAPVLPPAALRTPTPAGPTIMPLIRQIQT--AVMPNG------ 266
A +A A AAP P+P A +PA +P + + AV P+
Sbjct: 501 AAPVAVAAAAAPAAAAAPSPATAAATAAAVSPAAAGQIPAAASVASAAAVAPSAAAAAAV 560
Query: 267 -------TPHPTAAIVP-PGPEAGLIYTPYE-YPYTLAPATSILEYPIEPSGVLGA 313
P P A+VP P P A P + T APA + P V A
Sbjct: 561 QVAPAAPAPVPAPALVPVPAPAAAQASAPAQTQAPTSAPAVAPTPAPTPTPAVAQA 616
>gi|166064029 angiomotin isoform 1 [Homo sapiens]
Length = 1084
Score = 36.2 bits (82), Expect = 0.043
Identities = 30/84 (35%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 207 ANIKSPALAFSLAATAQAAPRIITGPAPVLPPAALRTPTP-AGPTIMPLIRQIQT---AV 262
A++ S A AA A A PAPV PA + P P A P Q T AV
Sbjct: 951 ASVASAAAVAPSAAAAAAVQVAPAAPAPVPAPALVPVPAPAAAQASAPAQTQAPTSAPAV 1010
Query: 263 MPNGTPHPTAAI----VPPGPEAG 282
P P PT A+ VP P G
Sbjct: 1011 APTPAPTPTPAVAQAEVPASPATG 1034
Score = 28.5 bits (62), Expect = 9.1
Identities = 31/116 (26%), Positives = 41/116 (35%), Gaps = 17/116 (14%)
Query: 215 AFSLAATAQAAPRIITGPAPVLPPAALRTPTPAGPTIMPLIRQIQT--AVMPNG------ 266
A +A A AAP P+P A +PA +P + + AV P+
Sbjct: 910 AAPVAVAAAAAPAAAAAPSPATAAATAAAVSPAAAGQIPAAASVASAAAVAPSAAAAAAV 969
Query: 267 -------TPHPTAAIVP-PGPEAGLIYTPYE-YPYTLAPATSILEYPIEPSGVLGA 313
P P A+VP P P A P + T APA + P V A
Sbjct: 970 QVAPAAPAPVPAPALVPVPAPAAAQASAPAQTQAPTSAPAVAPTPAPTPTPAVAQA 1025
>gi|10863899 numb homolog (Drosophila)-like [Homo sapiens]
Length = 609
Score = 36.2 bits (82), Expect = 0.043
Identities = 28/95 (29%), Positives = 35/95 (36%), Gaps = 15/95 (15%)
Query: 213 ALAFSLAATAQAAPRIITGPAPVLPPAALRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTA 272
A AF AA Q P + G A PP A+ P+ G P PNG P P
Sbjct: 517 ANAFCSAAQLQPQPATLLGKAGAFPPPAI--PSAPGSQARP---------RPNGAPWPPE 565
Query: 273 AIVPPGPEAGLIYTPYEYPYTLAPATSILEYPIEP 307
P PE P+E + + +E P P
Sbjct: 566 PAPAPAPE----LDPFEAQWAALEGKATVEKPSNP 596
>gi|33286442 BCL6 co-repressor-like 1 [Homo sapiens]
Length = 1711
Score = 35.8 bits (81), Expect = 0.057
Identities = 38/119 (31%), Positives = 49/119 (41%), Gaps = 20/119 (16%)
Query: 207 ANIKSPALAFSLAATAQAAPRIITGP------------APVLPPAALRTPTPAGPTIMPL 254
A + +P LA A+T AAP + P P L PA TP PA PT P+
Sbjct: 331 APVPTPVLAPMPASTPPAAPAPPSVPMPTPTPSSGPPSTPTLIPAFAPTPVPA-PTPAPI 389
Query: 255 IRQIQTAVMPNGTPH--PTAAIVPPGPEAGLIYTPYEYPYTLAPATSILEYPIEPSGVL 311
T MP TP PT+A +P A + +P APA + +P VL
Sbjct: 390 FTPAPTP-MPAATPAAIPTSAPIP----ASFSLSRVCFPAAQAPAMQKVPLSFQPGTVL 443
Score = 34.3 bits (77), Expect = 0.16
Identities = 34/110 (30%), Positives = 43/110 (39%), Gaps = 30/110 (27%)
Query: 209 IKSPALAFSLAATAQAAPRIITGPAPV---------LPPAA-------LRTPTPAG---- 248
+ +P LA A +AP ++ P P PPAA + TPTP+
Sbjct: 309 VSAPPLALIQAPVPPSAPTLVLAPVPTPVLAPMPASTPPAAPAPPSVPMPTPTPSSGPPS 368
Query: 249 -PTIMPLIRQIQTAVMPNGTPHPT-AAIVPPGPEAGLIYTPYEYPYTLAP 296
PT++P A P P PT A I P P TP P T AP
Sbjct: 369 TPTLIP-------AFAPTPVPAPTPAPIFTPAPTPMPAATPAAIP-TSAP 410
Score = 31.6 bits (70), Expect = 1.1
Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
Query: 232 PAPVLPPAALRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPG---PEAGLIYTPY 288
PAP P A + PA P++ LI + P A PP P + P
Sbjct: 246 PAPSPPLAPVPALAPAPPSVPTLISDSNPLSVSASVLVPVPASAPPSGPVPLSAPAPAPL 305
Query: 289 EYPYTLAPATSILEYPIEPSG---VLGAVATKV 318
P + AP ++++ P+ PS VL V T V
Sbjct: 306 SVPVS-APPLALIQAPVPPSAPTLVLAPVPTPV 337
>gi|160707881 formin 2 [Homo sapiens]
Length = 1722
Score = 35.4 bits (80), Expect = 0.074
Identities = 24/76 (31%), Positives = 30/76 (39%)
Query: 232 PAPVLPPAALRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAGLIYTPYEYP 291
P P LP A + P P +P + +P P P A I PP P G+ P P
Sbjct: 1164 PPPPLPGAGIPPPPPLPGVGIPPPPPLPGVGIPPPPPLPGAGIPPPPPLPGMGIPPAPAP 1223
Query: 292 YTLAPATSILEYPIEP 307
P T I P+ P
Sbjct: 1224 PLPPPGTGIPPPPLLP 1239
Score = 33.9 bits (76), Expect = 0.22
Identities = 20/51 (39%), Positives = 24/51 (47%)
Query: 232 PAPVLPPAALRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAG 282
P P LP AA+ P P +PL + A +P P P A I PP P G
Sbjct: 944 PPPPLPGAAIPPPPPLPGAGIPLPPPLPGAGIPPPPPLPGAGIPPPPPLPG 994
Score = 30.4 bits (67), Expect = 2.4
Identities = 18/51 (35%), Positives = 22/51 (43%)
Query: 232 PAPVLPPAALRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAG 282
P P LP A + P P +P + A +P P P A I PP P G
Sbjct: 933 PLPPLPGAGIPPPPPLPGAAIPPPPPLPGAGIPLPPPLPGAGIPPPPPLPG 983
Score = 30.4 bits (67), Expect = 2.4
Identities = 19/56 (33%), Positives = 24/56 (42%)
Query: 232 PAPVLPPAALRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAGLIYTP 287
P P LP A + P P +P + A +P P P A I PP P G+ P
Sbjct: 1054 PPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGVGIPP 1109
Score = 30.4 bits (67), Expect = 2.4
Identities = 19/56 (33%), Positives = 24/56 (42%)
Query: 232 PAPVLPPAALRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAGLIYTP 287
P P LP A + P P +P + A +P P P A I PP P G+ P
Sbjct: 1131 PPPPLPGAGIPPPPPLPRVGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGVGIPP 1186
Score = 29.6 bits (65), Expect = 4.1
Identities = 18/51 (35%), Positives = 22/51 (43%)
Query: 232 PAPVLPPAALRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAG 282
P P LP A + P P +P + A +P P P A I PP P G
Sbjct: 955 PPPPLPGAGIPLPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPG 1005
Score = 29.6 bits (65), Expect = 4.1
Identities = 18/51 (35%), Positives = 22/51 (43%)
Query: 232 PAPVLPPAALRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAG 282
P P LP A + P P +P + A +P P P A I PP P G
Sbjct: 977 PPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPG 1027
Score = 29.6 bits (65), Expect = 4.1
Identities = 18/51 (35%), Positives = 22/51 (43%)
Query: 232 PAPVLPPAALRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAG 282
P P LP A + P P +P + A +P P P A I PP P G
Sbjct: 988 PPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPG 1038
Score = 29.6 bits (65), Expect = 4.1
Identities = 18/51 (35%), Positives = 22/51 (43%)
Query: 232 PAPVLPPAALRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAG 282
P P LP A + P P +P + A +P P P A I PP P G
Sbjct: 999 PPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPG 1049
Score = 29.6 bits (65), Expect = 4.1
Identities = 18/51 (35%), Positives = 22/51 (43%)
Query: 232 PAPVLPPAALRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAG 282
P P LP A + P P +P + A +P P P A I PP P G
Sbjct: 1010 PPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPG 1060
Score = 29.6 bits (65), Expect = 4.1
Identities = 18/51 (35%), Positives = 22/51 (43%)
Query: 232 PAPVLPPAALRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAG 282
P P LP A + P P +P + A +P P P A I PP P G
Sbjct: 1021 PPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPG 1071
Score = 29.6 bits (65), Expect = 4.1
Identities = 18/51 (35%), Positives = 22/51 (43%)
Query: 232 PAPVLPPAALRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAG 282
P P LP A + P P +P + A +P P P A I PP P G
Sbjct: 1032 PPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPG 1082
Score = 29.6 bits (65), Expect = 4.1
Identities = 18/51 (35%), Positives = 22/51 (43%)
Query: 232 PAPVLPPAALRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAG 282
P P LP A + P P +P + A +P P P A I PP P G
Sbjct: 1043 PPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPG 1093
Score = 29.6 bits (65), Expect = 4.1
Identities = 18/51 (35%), Positives = 22/51 (43%)
Query: 232 PAPVLPPAALRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAG 282
P P LP A + P P +P + A +P P P A I PP P G
Sbjct: 1087 PPPPLPGAGIPPPPPLPGVGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPG 1137
Score = 28.9 bits (63), Expect = 6.9
Identities = 18/57 (31%), Positives = 23/57 (40%)
Query: 226 PRIITGPAPVLPPAALRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAG 282
P + P P LP A + P P +P + A +P P P I PP P G
Sbjct: 1103 PGVGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPRVGIPPPPPLPG 1159
Score = 28.5 bits (62), Expect = 9.1
Identities = 17/51 (33%), Positives = 21/51 (41%)
Query: 232 PAPVLPPAALRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAG 282
P P LP A + P P +P + +P P P A I PP P G
Sbjct: 1120 PPPPLPGAGIPPPPPLPGAGIPPPPPLPRVGIPPPPPLPGAGIPPPPPLPG 1170
>gi|139394646 iroquois homeobox protein 5 [Homo sapiens]
Length = 483
Score = 35.4 bits (80), Expect = 0.074
Identities = 45/152 (29%), Positives = 57/152 (37%), Gaps = 14/152 (9%)
Query: 137 QNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLME 196
+NR + E N DL ED + E K E AA G + L+
Sbjct: 182 RNRSEDEEEEENIDLEK--NDEDEPQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPA 239
Query: 197 LAILNGTYRDANIKSPALAFSLAATAQAAPRIITGPAPVLPPAALRTPTPAGPTIMPLIR 256
G+ D++ K P L A Q PR GP+P P AA PA
Sbjct: 240 GKETEGSLSDSDFKEPPSEGRLDAL-QGPPRT-GGPSPAGPAAARLAEDPAPH------- 290
Query: 257 QIQTAVMPNGTPHPTAAIVPPGPEA-GLIYTP 287
A P PHP A VPPGP +I++P
Sbjct: 291 --YPAGAPAPGPHPAAGEVPPGPGGPSVIHSP 320
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.134 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,674,450
Number of Sequences: 37866
Number of extensions: 794619
Number of successful extensions: 3637
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 216
Number of HSP's that attempted gapping in prelim test: 3138
Number of HSP's gapped (non-prelim): 665
length of query: 341
length of database: 18,247,518
effective HSP length: 103
effective length of query: 238
effective length of database: 14,347,320
effective search space: 3414662160
effective search space used: 3414662160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.