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Search of human proteins with 13259503
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13259503 short heterodimer partner [Homo sapiens]
(257 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13259503 short heterodimer partner [Homo sapiens] 528 e-150
gi|5016090 nuclear receptor subfamily 0, group B, member 1 [Homo... 147 9e-36
gi|5032173 nuclear receptor subfamily 2, group F, member 1 [Homo... 98 8e-21
gi|20070199 nuclear receptor subfamily 2, group F, member 6 [Hom... 97 1e-20
gi|223555953 nuclear receptor subfamily 2, group F, member 2 iso... 95 5e-20
gi|223555951 nuclear receptor subfamily 2, group F, member 2 iso... 95 5e-20
gi|223555949 nuclear receptor subfamily 2, group F, member 2 iso... 95 5e-20
gi|14149746 nuclear receptor subfamily 2, group F, member 2 isof... 95 5e-20
gi|7657395 photoreceptor-specific nuclear receptor isoform b [Ho... 86 3e-17
gi|36950991 nuclear receptor subfamily 2, group C, member 2 [Hom... 86 4e-17
gi|4507537 nuclear receptor subfamily 2, group E, member 1 [Homo... 80 1e-15
gi|11415052 retinoid X receptor, beta [Homo sapiens] 69 4e-12
gi|5902068 retinoid X receptor, gamma isoform a [Homo sapiens] 68 7e-12
gi|7706515 photoreceptor-specific nuclear receptor isoform a [Ho... 67 2e-11
gi|189491739 nuclear receptor subfamily 2, group C, member 1 iso... 67 2e-11
gi|4506755 retinoid X receptor, alpha [Homo sapiens] 66 3e-11
gi|31077209 hepatocyte nuclear factor 4 alpha isoform c [Homo sa... 65 4e-11
gi|31077207 hepatocyte nuclear factor 4 alpha isoform a [Homo sa... 65 4e-11
gi|31077205 hepatocyte nuclear factor 4 alpha isoform b [Homo sa... 65 4e-11
gi|71725336 hepatocyte nuclear factor 4 alpha isoform f [Homo sa... 65 4e-11
gi|71725341 hepatocyte nuclear factor 4 alpha isoform e [Homo sa... 65 4e-11
gi|71725339 hepatocyte nuclear factor 4 alpha isoform d [Homo sa... 65 4e-11
gi|115583654 hepatocyte nuclear factor 4, gamma [Homo sapiens] 61 8e-10
gi|18860920 estrogen-related receptor alpha [Homo sapiens] 54 1e-07
gi|53729325 nuclear receptor subfamily 6, group A, member 1 isof... 54 1e-07
gi|53729327 nuclear receptor subfamily 6, group A, member 1 isof... 54 1e-07
gi|45545405 nuclear receptor subfamily 5, group A, member 2 isof... 54 2e-07
gi|4504343 nuclear receptor subfamily 5, group A, member 2 isofo... 54 2e-07
gi|20070193 nuclear receptor subfamily 5, group A, member 1 [Hom... 43 2e-04
gi|45545429 estrogen-related receptor gamma isoform 2 [Homo sapi... 40 0.002
>gi|13259503 short heterodimer partner [Homo sapiens]
Length = 257
Score = 528 bits (1360), Expect = e-150
Identities = 257/257 (100%), Positives = 257/257 (100%)
Query: 1 MSTSQPGACPCQGAASRPAILYALLSSSLKAVPRPRSRCLCRQHRPVQLCAPHRTCREAL 60
MSTSQPGACPCQGAASRPAILYALLSSSLKAVPRPRSRCLCRQHRPVQLCAPHRTCREAL
Sbjct: 1 MSTSQPGACPCQGAASRPAILYALLSSSLKAVPRPRSRCLCRQHRPVQLCAPHRTCREAL 60
Query: 61 DVLAKTVAFLRNLPSFWQLPPQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVPSILKK 120
DVLAKTVAFLRNLPSFWQLPPQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVPSILKK
Sbjct: 61 DVLAKTVAFLRNLPSFWQLPPQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVPSILKK 120
Query: 121 ILLEEPSSSGGSGQLPDRPQPSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVP 180
ILLEEPSSSGGSGQLPDRPQPSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVP
Sbjct: 121 ILLEEPSSSGGSGQLPDRPQPSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVP 180
Query: 181 GLQAASHIGHLQQEAHWVLCEVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPI 240
GLQAASHIGHLQQEAHWVLCEVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPI
Sbjct: 181 GLQAASHIGHLQQEAHWVLCEVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPI 240
Query: 241 IGDVDIAGLLGDMLLLR 257
IGDVDIAGLLGDMLLLR
Sbjct: 241 IGDVDIAGLLGDMLLLR 257
>gi|5016090 nuclear receptor subfamily 0, group B, member 1 [Homo
sapiens]
Length = 470
Score = 147 bits (371), Expect = 9e-36
Identities = 88/223 (39%), Positives = 117/223 (52%), Gaps = 13/223 (5%)
Query: 45 RPVQLCAPHRTCREALDVLAKTVAFLRNLPSFWQLPPQDQRRLLQGCWGPLFLLGLAQDA 104
RPV L +P C A L KT+ F++ LP F LP Q L++ CW L +L LAQD
Sbjct: 244 RPVALKSPQVVCEAASAGLLKTLRFVKYLPCFQVLPLDQQLVLVRNCWASLLMLELAQDR 303
Query: 105 VTFEVAEAPVPSILKKILLEEPSSSGGSGQLP-------------DRPQPSLAAVQWLQC 151
+ FE E PS+L+KIL +GG+ LP R PS + VQ ++C
Sbjct: 304 LQFETVEVSEPSMLQKILTTRRRETGGNEPLPVPTLQHHLAPPAEARKVPSASQVQAIKC 363
Query: 152 CLESFWSLELSPKEYACLKGTILFNPDVPGLQAASHIGHLQQEAHWVLCEVLEPWCPAAQ 211
L WSL +S KEYA LKGT+LFNPDVPGLQ +I LQ +L E
Sbjct: 364 FLSKCWSLNISTKEYAYLKGTVLFNPDVPGLQCVKYIQGLQWGTQQILSEHTRMTHQGPH 423
Query: 212 GRLTRVLLTASTLKSIPTSLLGDLFFRPIIGDVDIAGLLGDML 254
R + T L+ I +++ +LFFRPIIG V + ++ +ML
Sbjct: 424 DRFIELNSTLFLLRFINANVIAELFFRPIIGTVSMDDMMLEML 466
>gi|5032173 nuclear receptor subfamily 2, group F, member 1 [Homo
sapiens]
Length = 423
Score = 97.8 bits (242), Expect = 8e-21
Identities = 72/235 (30%), Positives = 111/235 (47%), Gaps = 11/235 (4%)
Query: 21 LYALLSSSLKAVPRPRSRCLCRQHRPVQLCAPHRTCREALDVLAKTVAFLRNLPSFWQLP 80
L +S L+A P P SR + +P + C A +L V + RN+P F L
Sbjct: 185 LSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQ 244
Query: 81 PQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVPSILKKILLEEPSSSGGSGQLPDRPQ 140
DQ LL+ W LF+L AQ ++ VA P + L P S+ DR
Sbjct: 245 ITDQVSLLRLTWSELFVLNAAQCSMPLHVA----PLLAAAGLHASPMSA-------DRVV 293
Query: 141 PSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVPGLQAASHIGHLQQEAHWVLC 200
+ ++ Q +E +L + EY+CLK +LF D GL A+HI LQ+++ L
Sbjct: 294 AFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALE 353
Query: 201 EVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPIIGDVDIAGLLGDMLL 255
E + P R ++LL +L+++ +S++ LFF ++G I L+ DMLL
Sbjct: 354 EYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLL 408
>gi|20070199 nuclear receptor subfamily 2, group F, member 6 [Homo
sapiens]
Length = 404
Score = 97.1 bits (240), Expect = 1e-20
Identities = 65/200 (32%), Positives = 96/200 (48%), Gaps = 11/200 (5%)
Query: 56 CREALDVLAKTVAFLRNLPSFWQLPPQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVP 115
C A +L TV + R+ P F +LP DQ LL+ W LF+L AQ A+ A P
Sbjct: 203 CELAARLLFSTVEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTA----P 258
Query: 116 SILKKILLEEPSSSGGSGQLPDRPQPSLAAVQWLQCCLESFWSLELSPKEYACLKGTILF 175
+ L P ++ +R + V+ Q ++ L++ EY CLK LF
Sbjct: 259 LLAAAGLHAAPMAA-------ERAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALF 311
Query: 176 NPDVPGLQAASHIGHLQQEAHWVLCEVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDL 235
PD GL +H+ LQ++A L E + P+ R R+LL L+++P SL+ L
Sbjct: 312 TPDACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQL 371
Query: 236 FFRPIIGDVDIAGLLGDMLL 255
FF ++G I L+ DMLL
Sbjct: 372 FFMRLVGKTPIETLIRDMLL 391
>gi|223555953 nuclear receptor subfamily 2, group F, member 2
isoform c [Homo sapiens]
Length = 261
Score = 95.1 bits (235), Expect = 5e-20
Identities = 70/235 (29%), Positives = 110/235 (46%), Gaps = 11/235 (4%)
Query: 21 LYALLSSSLKAVPRPRSRCLCRQHRPVQLCAPHRTCREALDVLAKTVAFLRNLPSFWQLP 80
L +S L+A P P SR + +P + C A +L V + RN+P F L
Sbjct: 25 LSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQ 84
Query: 81 PQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVPSILKKILLEEPSSSGGSGQLPDRPQ 140
DQ LL+ W LF+L AQ ++ VA P + L P S+ DR
Sbjct: 85 ITDQVALLRLTWSELFVLNAAQCSMPLHVA----PLLAAAGLHASPMSA-------DRVV 133
Query: 141 PSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVPGLQAASHIGHLQQEAHWVLC 200
+ ++ Q +E +L + EY+CLK +LF D GL +H+ LQ+++ L
Sbjct: 134 AFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALE 193
Query: 201 EVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPIIGDVDIAGLLGDMLL 255
E + P R ++LL +L+++ +S++ LFF ++G I L+ DMLL
Sbjct: 194 EYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLL 248
>gi|223555951 nuclear receptor subfamily 2, group F, member 2
isoform c [Homo sapiens]
Length = 261
Score = 95.1 bits (235), Expect = 5e-20
Identities = 70/235 (29%), Positives = 110/235 (46%), Gaps = 11/235 (4%)
Query: 21 LYALLSSSLKAVPRPRSRCLCRQHRPVQLCAPHRTCREALDVLAKTVAFLRNLPSFWQLP 80
L +S L+A P P SR + +P + C A +L V + RN+P F L
Sbjct: 25 LSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQ 84
Query: 81 PQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVPSILKKILLEEPSSSGGSGQLPDRPQ 140
DQ LL+ W LF+L AQ ++ VA P + L P S+ DR
Sbjct: 85 ITDQVALLRLTWSELFVLNAAQCSMPLHVA----PLLAAAGLHASPMSA-------DRVV 133
Query: 141 PSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVPGLQAASHIGHLQQEAHWVLC 200
+ ++ Q +E +L + EY+CLK +LF D GL +H+ LQ+++ L
Sbjct: 134 AFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALE 193
Query: 201 EVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPIIGDVDIAGLLGDMLL 255
E + P R ++LL +L+++ +S++ LFF ++G I L+ DMLL
Sbjct: 194 EYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLL 248
>gi|223555949 nuclear receptor subfamily 2, group F, member 2
isoform b [Homo sapiens]
Length = 281
Score = 95.1 bits (235), Expect = 5e-20
Identities = 70/235 (29%), Positives = 110/235 (46%), Gaps = 11/235 (4%)
Query: 21 LYALLSSSLKAVPRPRSRCLCRQHRPVQLCAPHRTCREALDVLAKTVAFLRNLPSFWQLP 80
L +S L+A P P SR + +P + C A +L V + RN+P F L
Sbjct: 45 LSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQ 104
Query: 81 PQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVPSILKKILLEEPSSSGGSGQLPDRPQ 140
DQ LL+ W LF+L AQ ++ VA P + L P S+ DR
Sbjct: 105 ITDQVALLRLTWSELFVLNAAQCSMPLHVA----PLLAAAGLHASPMSA-------DRVV 153
Query: 141 PSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVPGLQAASHIGHLQQEAHWVLC 200
+ ++ Q +E +L + EY+CLK +LF D GL +H+ LQ+++ L
Sbjct: 154 AFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALE 213
Query: 201 EVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPIIGDVDIAGLLGDMLL 255
E + P R ++LL +L+++ +S++ LFF ++G I L+ DMLL
Sbjct: 214 EYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLL 268
>gi|14149746 nuclear receptor subfamily 2, group F, member 2 isoform
a [Homo sapiens]
Length = 414
Score = 95.1 bits (235), Expect = 5e-20
Identities = 70/235 (29%), Positives = 110/235 (46%), Gaps = 11/235 (4%)
Query: 21 LYALLSSSLKAVPRPRSRCLCRQHRPVQLCAPHRTCREALDVLAKTVAFLRNLPSFWQLP 80
L +S L+A P P SR + +P + C A +L V + RN+P F L
Sbjct: 178 LSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQ 237
Query: 81 PQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVPSILKKILLEEPSSSGGSGQLPDRPQ 140
DQ LL+ W LF+L AQ ++ VA P + L P S+ DR
Sbjct: 238 ITDQVALLRLTWSELFVLNAAQCSMPLHVA----PLLAAAGLHASPMSA-------DRVV 286
Query: 141 PSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVPGLQAASHIGHLQQEAHWVLC 200
+ ++ Q +E +L + EY+CLK +LF D GL +H+ LQ+++ L
Sbjct: 287 AFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALE 346
Query: 201 EVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPIIGDVDIAGLLGDMLL 255
E + P R ++LL +L+++ +S++ LFF ++G I L+ DMLL
Sbjct: 347 EYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLL 401
>gi|7657395 photoreceptor-specific nuclear receptor isoform b [Homo
sapiens]
Length = 410
Score = 85.9 bits (211), Expect = 3e-17
Identities = 60/194 (30%), Positives = 97/194 (50%), Gaps = 15/194 (7%)
Query: 62 VLAKTVAFLRNLPSFWQLPPQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVPSILKKI 121
+L V + +NLP F LP +DQ LL+ W LFLLG Q ++ + P
Sbjct: 227 LLFMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPP----- 281
Query: 122 LLEEPSSSGGSGQLPDRPQPSLAAVQW--LQCCLESFWSLELSPKEYACLKGTILFNPDV 179
E ++ G G+L +LA+++ LQ + F +L + P E+AC+K +LF P+
Sbjct: 282 --EASAAGGAQGRL------TLASMETRVLQETISRFRALAVDPTEFACMKALVLFKPET 333
Query: 180 PGLQAASHIGHLQQEAHWVLCEVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRP 239
GL+ H+ LQ ++ +L + + P+ R ++LL +L+ I + LFFR
Sbjct: 334 RGLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRK 393
Query: 240 IIGDVDIAGLLGDM 253
IG+ + LL DM
Sbjct: 394 TIGNTPMEKLLCDM 407
>gi|36950991 nuclear receptor subfamily 2, group C, member 2 [Homo
sapiens]
Length = 615
Score = 85.5 bits (210), Expect = 4e-17
Identities = 58/200 (29%), Positives = 99/200 (49%), Gaps = 9/200 (4%)
Query: 53 HRTCREALDVLAKTVAFLRNLPSFWQLPPQDQRRLLQGCWGPLFLLGLAQDAVTFEVAE- 111
H C A +L ++ + R++P+F L L++ CW LF LGLAQ A ++
Sbjct: 403 HYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTI 462
Query: 112 -APVPSILKKILLEEPSSSGGSGQLPDRPQPSLAAVQWLQCCLESFWSLELSPKEYACLK 170
A + + L+ + E+ S DR + + + LQ S L++ EYA LK
Sbjct: 463 LAAIVNHLQNSIQEDKLSG-------DRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLK 515
Query: 171 GTILFNPDVPGLQAASHIGHLQQEAHWVLCEVLEPWCPAAQGRLTRVLLTASTLKSIPTS 230
+LF+PD PGL + S I Q++A L + ++ RL R+L+ L+ + ++
Sbjct: 516 AIVLFSPDHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSN 575
Query: 231 LLGDLFFRPIIGDVDIAGLL 250
+ +LFF +IG+V I ++
Sbjct: 576 ITEELFFTGLIGNVSIDSII 595
>gi|4507537 nuclear receptor subfamily 2, group E, member 1 [Homo
sapiens]
Length = 385
Score = 80.5 bits (197), Expect = 1e-15
Identities = 60/210 (28%), Positives = 93/210 (44%), Gaps = 18/210 (8%)
Query: 51 APHRTCREALDVLAKTVAFLRNLPSFWQLPPQDQRRLLQGCWGPLFLLGLAQDAVTFEVA 110
A C A +L ++ + +++P+F L QDQ LL+ W LF+LG+AQ A+ +
Sbjct: 181 ATESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDAN 240
Query: 111 EAPVPSILKKILLEEPSSSGGSGQLPDRPQPSLAAVQWLQCCLESFWSLELSPKEYACLK 170
L S G + ++ +Q LQ + F L L E+ACLK
Sbjct: 241 -----------TLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARFRQLRLDATEFACLK 289
Query: 171 GTILF-------NPDVPGLQAASHIGHLQQEAHWVLCEVLEPWCPAAQGRLTRVLLTAST 223
+ F ++ + A+ I LQ EA L + P R ++LL
Sbjct: 290 CIVTFKAVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPA 349
Query: 224 LKSIPTSLLGDLFFRPIIGDVDIAGLLGDM 253
L+SI S + ++FF+ IG+V I LL DM
Sbjct: 350 LRSISPSTIEEVFFKKTIGNVPITRLLSDM 379
>gi|11415052 retinoid X receptor, beta [Homo sapiens]
Length = 533
Score = 68.9 bits (167), Expect = 4e-12
Identities = 57/206 (27%), Positives = 84/206 (40%), Gaps = 26/206 (12%)
Query: 56 CREALDVLAKTVAFLRNLPSFWQLPPQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVP 115
C+ A L V + + +P F LP DQ LL+ W L + + ++
Sbjct: 340 CQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSI---------- 389
Query: 116 SILKKILL-------EEPSSSGGSGQLPDRPQPSLAAVQWLQCCLESFWSLELSPKEYAC 168
+ ILL + S G G + DR L + + + E C
Sbjct: 390 DVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVS---------KMRDMRMDKTELGC 440
Query: 169 LKGTILFNPDVPGLQAASHIGHLQQEAHWVLCEVLEPWCPAAQGRLTRVLLTASTLKSIP 228
L+ ILFNPD GL S + L+++ + L + P QGR ++LL L+SI
Sbjct: 441 LRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIG 500
Query: 229 TSLLGDLFFRPIIGDVDIAGLLGDML 254
L LFF +IGD I L +ML
Sbjct: 501 LKCLEHLFFFKLIGDTPIDTFLMEML 526
>gi|5902068 retinoid X receptor, gamma isoform a [Homo sapiens]
Length = 463
Score = 68.2 bits (165), Expect = 7e-12
Identities = 56/206 (27%), Positives = 84/206 (40%), Gaps = 26/206 (12%)
Query: 56 CREALDVLAKTVAFLRNLPSFWQLPPQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVP 115
C A L V + + +P F L +DQ LL+ W L + + +V
Sbjct: 270 CHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSV---------- 319
Query: 116 SILKKILL-------EEPSSSGGSGQLPDRPQPSLAAVQWLQCCLESFWSLELSPKEYAC 168
S+ ILL + S G G + DR L + +++ E C
Sbjct: 320 SVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVS---------KMKDMQMDKSELGC 370
Query: 169 LKGTILFNPDVPGLQAASHIGHLQQEAHWVLCEVLEPWCPAAQGRLTRVLLTASTLKSIP 228
L+ +LFNPD GL S + L+++ + L + P GR ++LL L+SI
Sbjct: 371 LRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIG 430
Query: 229 TSLLGDLFFRPIIGDVDIAGLLGDML 254
L LFF +IGD I L +ML
Sbjct: 431 LKCLEHLFFFKLIGDTPIDTFLMEML 456
>gi|7706515 photoreceptor-specific nuclear receptor isoform a [Homo
sapiens]
Length = 367
Score = 67.0 bits (162), Expect = 2e-11
Identities = 44/142 (30%), Positives = 72/142 (50%), Gaps = 15/142 (10%)
Query: 62 VLAKTVAFLRNLPSFWQLPPQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVPSILKKI 121
+L V + +NLP F LP +DQ LL+ W LFLLG Q ++ + P
Sbjct: 227 LLFMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPP----- 281
Query: 122 LLEEPSSSGGSGQLPDRPQPSLAAVQW--LQCCLESFWSLELSPKEYACLKGTILFNPDV 179
E ++ G G+L +LA+++ LQ + F +L + P E+AC+K +LF P+
Sbjct: 282 --EASAAGGAQGRL------TLASMETRVLQETISRFRALAVDPTEFACMKALVLFKPET 333
Query: 180 PGLQAASHIGHLQQEAHWVLCE 201
GL+ H+ LQ ++ +L +
Sbjct: 334 RGLKDPEHVEALQDQSQVMLSQ 355
>gi|189491739 nuclear receptor subfamily 2, group C, member 1
isoform a [Homo sapiens]
Length = 603
Score = 67.0 bits (162), Expect = 2e-11
Identities = 55/204 (26%), Positives = 96/204 (47%), Gaps = 9/204 (4%)
Query: 53 HRTCREALDVLAKTVAFLRNLPSFWQLPPQDQRRLLQGCWGPLFLLGLAQDAVTFEVAE- 111
H A +L ++ + ++PSF L ++ L++ W LF LGLAQ VA
Sbjct: 391 HYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTLGLAQCWQVMNVATI 450
Query: 112 -APVPSILKKILLEEPSSSGGSGQLPDRPQPSLAAVQWLQCCLESFWSLELSPKEYACLK 170
A + L L ++ S+ +R + + + LQ S L + EYA LK
Sbjct: 451 LATFVNCLHNSLQQDKMST-------ERRKLLMEHIFKLQEFCNSMVKLCIDGYEYAYLK 503
Query: 171 GTILFNPDVPGLQAASHIGHLQQEAHWVLCEVLEPWCPAAQGRLTRVLLTASTLKSIPTS 230
+LF+PD P L+ I Q++A+ + + P RL+R+LL L+ + +
Sbjct: 504 AIVLFSPDHPSLENMEQIEKFQEKAYVEFQDYITKTYPDDTYRLSRLLLRLPALRLMNAT 563
Query: 231 LLGDLFFRPIIGDVDIAGLLGDML 254
+ +LFF+ +IG++ I ++ +L
Sbjct: 564 ITEELFFKGLIGNIRIDSVIPHIL 587
>gi|4506755 retinoid X receptor, alpha [Homo sapiens]
Length = 462
Score = 66.2 bits (160), Expect = 3e-11
Identities = 51/199 (25%), Positives = 84/199 (42%), Gaps = 12/199 (6%)
Query: 56 CREALDVLAKTVAFLRNLPSFWQLPPQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVP 115
C+ A L V + + +P F +LP DQ LL+ W L + + ++ +
Sbjct: 269 CQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLAT 328
Query: 116 SILKKILLEEPSSSGGSGQLPDRPQPSLAAVQWLQCCLESFWSLELSPKEYACLKGTILF 175
+ + + S G G + DR L + +++ E CL+ +LF
Sbjct: 329 GLH---VHRNSAHSAGVGAIFDRVLTELVS---------KMRDMQMDKTELGCLRAIVLF 376
Query: 176 NPDVPGLQAASHIGHLQQEAHWVLCEVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDL 235
NPD GL + + L+++ + L + P GR ++LL L+SI L L
Sbjct: 377 NPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHL 436
Query: 236 FFRPIIGDVDIAGLLGDML 254
FF +IGD I L +ML
Sbjct: 437 FFFKLIGDTPIDTFLMEML 455
>gi|31077209 hepatocyte nuclear factor 4 alpha isoform c [Homo
sapiens]
Length = 417
Score = 65.5 bits (158), Expect = 4e-11
Identities = 57/205 (27%), Positives = 90/205 (43%), Gaps = 22/205 (10%)
Query: 56 CREALDVLAKTVAFLRNLPSFWQLPPQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVP 115
C + L V + + +P+F +LP DQ LL+ G LLG + ++ F
Sbjct: 188 CESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVF-------- 239
Query: 116 SILKKILLEEPSSSGGSGQLPDRPQPSLA-----AVQWLQCCLESFWSLELSPKEYACLK 170
K +LL G+ + R P LA +++ L + F L++ EYA LK
Sbjct: 240 ---KDVLLL------GNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYLK 290
Query: 171 GTILFNPDVPGLQAASHIGHLQQEAHWVLCEVLEPWCPAAQGRLTRVLLTASTLKSIPTS 230
I F+PD GL I L+ + L + + ++GR +LL TL+SI
Sbjct: 291 AIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQ 350
Query: 231 LLGDLFFRPIIGDVDIAGLLGDMLL 255
++ + F + G I LL +MLL
Sbjct: 351 MIEQIQFIKLFGMAKIDNLLQEMLL 375
>gi|31077207 hepatocyte nuclear factor 4 alpha isoform a [Homo
sapiens]
Length = 464
Score = 65.5 bits (158), Expect = 4e-11
Identities = 57/205 (27%), Positives = 90/205 (43%), Gaps = 22/205 (10%)
Query: 56 CREALDVLAKTVAFLRNLPSFWQLPPQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVP 115
C + L V + + +P+F +LP DQ LL+ G LLG + ++ F
Sbjct: 188 CESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVF-------- 239
Query: 116 SILKKILLEEPSSSGGSGQLPDRPQPSLA-----AVQWLQCCLESFWSLELSPKEYACLK 170
K +LL G+ + R P LA +++ L + F L++ EYA LK
Sbjct: 240 ---KDVLLL------GNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYLK 290
Query: 171 GTILFNPDVPGLQAASHIGHLQQEAHWVLCEVLEPWCPAAQGRLTRVLLTASTLKSIPTS 230
I F+PD GL I L+ + L + + ++GR +LL TL+SI
Sbjct: 291 AIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQ 350
Query: 231 LLGDLFFRPIIGDVDIAGLLGDMLL 255
++ + F + G I LL +MLL
Sbjct: 351 MIEQIQFIKLFGMAKIDNLLQEMLL 375
>gi|31077205 hepatocyte nuclear factor 4 alpha isoform b [Homo
sapiens]
Length = 474
Score = 65.5 bits (158), Expect = 4e-11
Identities = 57/205 (27%), Positives = 90/205 (43%), Gaps = 22/205 (10%)
Query: 56 CREALDVLAKTVAFLRNLPSFWQLPPQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVP 115
C + L V + + +P+F +LP DQ LL+ G LLG + ++ F
Sbjct: 188 CESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVF-------- 239
Query: 116 SILKKILLEEPSSSGGSGQLPDRPQPSLA-----AVQWLQCCLESFWSLELSPKEYACLK 170
K +LL G+ + R P LA +++ L + F L++ EYA LK
Sbjct: 240 ---KDVLLL------GNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYLK 290
Query: 171 GTILFNPDVPGLQAASHIGHLQQEAHWVLCEVLEPWCPAAQGRLTRVLLTASTLKSIPTS 230
I F+PD GL I L+ + L + + ++GR +LL TL+SI
Sbjct: 291 AIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQ 350
Query: 231 LLGDLFFRPIIGDVDIAGLLGDMLL 255
++ + F + G I LL +MLL
Sbjct: 351 MIEQIQFIKLFGMAKIDNLLQEMLL 375
>gi|71725336 hepatocyte nuclear factor 4 alpha isoform f [Homo
sapiens]
Length = 395
Score = 65.5 bits (158), Expect = 4e-11
Identities = 57/205 (27%), Positives = 90/205 (43%), Gaps = 22/205 (10%)
Query: 56 CREALDVLAKTVAFLRNLPSFWQLPPQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVP 115
C + L V + + +P+F +LP DQ LL+ G LLG + ++ F
Sbjct: 166 CESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVF-------- 217
Query: 116 SILKKILLEEPSSSGGSGQLPDRPQPSLA-----AVQWLQCCLESFWSLELSPKEYACLK 170
K +LL G+ + R P LA +++ L + F L++ EYA LK
Sbjct: 218 ---KDVLLL------GNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYLK 268
Query: 171 GTILFNPDVPGLQAASHIGHLQQEAHWVLCEVLEPWCPAAQGRLTRVLLTASTLKSIPTS 230
I F+PD GL I L+ + L + + ++GR +LL TL+SI
Sbjct: 269 AIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQ 328
Query: 231 LLGDLFFRPIIGDVDIAGLLGDMLL 255
++ + F + G I LL +MLL
Sbjct: 329 MIEQIQFIKLFGMAKIDNLLQEMLL 353
>gi|71725341 hepatocyte nuclear factor 4 alpha isoform e [Homo
sapiens]
Length = 442
Score = 65.5 bits (158), Expect = 4e-11
Identities = 57/205 (27%), Positives = 90/205 (43%), Gaps = 22/205 (10%)
Query: 56 CREALDVLAKTVAFLRNLPSFWQLPPQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVP 115
C + L V + + +P+F +LP DQ LL+ G LLG + ++ F
Sbjct: 166 CESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVF-------- 217
Query: 116 SILKKILLEEPSSSGGSGQLPDRPQPSLA-----AVQWLQCCLESFWSLELSPKEYACLK 170
K +LL G+ + R P LA +++ L + F L++ EYA LK
Sbjct: 218 ---KDVLLL------GNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYLK 268
Query: 171 GTILFNPDVPGLQAASHIGHLQQEAHWVLCEVLEPWCPAAQGRLTRVLLTASTLKSIPTS 230
I F+PD GL I L+ + L + + ++GR +LL TL+SI
Sbjct: 269 AIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQ 328
Query: 231 LLGDLFFRPIIGDVDIAGLLGDMLL 255
++ + F + G I LL +MLL
Sbjct: 329 MIEQIQFIKLFGMAKIDNLLQEMLL 353
>gi|71725339 hepatocyte nuclear factor 4 alpha isoform d [Homo
sapiens]
Length = 452
Score = 65.5 bits (158), Expect = 4e-11
Identities = 57/205 (27%), Positives = 90/205 (43%), Gaps = 22/205 (10%)
Query: 56 CREALDVLAKTVAFLRNLPSFWQLPPQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVP 115
C + L V + + +P+F +LP DQ LL+ G LLG + ++ F
Sbjct: 166 CESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVF-------- 217
Query: 116 SILKKILLEEPSSSGGSGQLPDRPQPSLA-----AVQWLQCCLESFWSLELSPKEYACLK 170
K +LL G+ + R P LA +++ L + F L++ EYA LK
Sbjct: 218 ---KDVLLL------GNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYLK 268
Query: 171 GTILFNPDVPGLQAASHIGHLQQEAHWVLCEVLEPWCPAAQGRLTRVLLTASTLKSIPTS 230
I F+PD GL I L+ + L + + ++GR +LL TL+SI
Sbjct: 269 AIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQ 328
Query: 231 LLGDLFFRPIIGDVDIAGLLGDMLL 255
++ + F + G I LL +MLL
Sbjct: 329 MIEQIQFIKLFGMAKIDNLLQEMLL 353
>gi|115583654 hepatocyte nuclear factor 4, gamma [Homo sapiens]
Length = 445
Score = 61.2 bits (147), Expect = 8e-10
Identities = 55/204 (26%), Positives = 90/204 (44%), Gaps = 21/204 (10%)
Query: 56 CREALDVLAKTVAFLRNLPSFWQLPPQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVP 115
C L V + + +P+F +LP DQ LL+ G LLG + ++ +
Sbjct: 177 CESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMMY-------- 228
Query: 116 SILKKILLEEPSSSGGSGQLPDRP----QPSLAAVQWLQCCLESFWSLELSPKEYACLKG 171
K ILL G+ + R + S A + L + F +++ EYACLK
Sbjct: 229 ---KDILLL------GNNYVIHRNSCEVEISRVANRVLDELVRPFQEIQIDDNEYACLKA 279
Query: 172 TILFNPDVPGLQAASHIGHLQQEAHWVLCEVLEPWCPAAQGRLTRVLLTASTLKSIPTSL 231
+ F+PD GL I +++ + L + + ++GR +LL TL+SI +
Sbjct: 280 IVFFDPDAKGLSDPVKIKNMRFQVQIGLEDYINDRQYDSRGRFGELLLLLPTLQSITWQM 339
Query: 232 LGDLFFRPIIGDVDIAGLLGDMLL 255
+ + F + G V I LL +MLL
Sbjct: 340 IEQIQFVKLFGMVKIDNLLQEMLL 363
>gi|18860920 estrogen-related receptor alpha [Homo sapiens]
Length = 423
Score = 54.3 bits (129), Expect = 1e-07
Identities = 52/193 (26%), Positives = 86/193 (44%), Gaps = 17/193 (8%)
Query: 66 TVAFLRNLPSFWQLPPQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVPSILKKILLEE 125
T+++ +++P F L DQ +LQ W + +LG+AQ ++ + A + +L EE
Sbjct: 239 TISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSLPLQDELAFAEDL---VLDEE 295
Query: 126 PSSSGGSGQLPDRPQPSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVPGLQAA 185
+ + G G+L L V+ LQ +L L +EY LK L N D ++ A
Sbjct: 296 GARAAGLGEL---GAALLQLVRRLQ-------ALRLEREEYVLLKALALANSDSVHIEDA 345
Query: 186 SHIGHLQQEAHWVLCEV----LEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPII 241
+ L++ H L E P A + R R+LLT L+ +L + +
Sbjct: 346 EAVEQLREALHEALLEYEAGRAGPGGGAERRRAGRLLLTLPLLRQTAGKVLAHFYGVKLE 405
Query: 242 GDVDIAGLLGDML 254
G V + L +ML
Sbjct: 406 GKVPMHKLFLEML 418
>gi|53729325 nuclear receptor subfamily 6, group A, member 1 isoform
1 [Homo sapiens]
Length = 480
Score = 54.3 bits (129), Expect = 1e-07
Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 10/146 (6%)
Query: 56 CREALDVLAKTVAFLRNLPSFWQLPPQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVP 115
CR A ++L + +A+++ LP F +L +D LL W L LL + V +
Sbjct: 288 CRLADELLFRQIAWIKKLPFFCELSIKDYTCLLSSTWQELILLS------SLTVYSKQIF 341
Query: 116 SILKKILLEEPSSSGGSGQLPDRPQPSLAAVQWLQCCLESFWSLELSPKEYACLKGTILF 175
L + + S + D + ++ L F L++S +EYAC+K
Sbjct: 342 GELADVTAKYSPSDEELHRFSDE---GMEVIERLIYLYHKFHQLKVSNEEYACMKAINFL 398
Query: 176 NPDVPGLQAASHIGHLQQEAHWVLCE 201
N D+ GL +AS + L + +W +C+
Sbjct: 399 NQDIRGLTSASQLEQLNKR-YWYICQ 423
>gi|53729327 nuclear receptor subfamily 6, group A, member 1 isoform
2 [Homo sapiens]
Length = 475
Score = 54.3 bits (129), Expect = 1e-07
Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 10/146 (6%)
Query: 56 CREALDVLAKTVAFLRNLPSFWQLPPQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVP 115
CR A ++L + +A+++ LP F +L +D LL W L LL + V +
Sbjct: 283 CRLADELLFRQIAWIKKLPFFCELSIKDYTCLLSSTWQELILLS------SLTVYSKQIF 336
Query: 116 SILKKILLEEPSSSGGSGQLPDRPQPSLAAVQWLQCCLESFWSLELSPKEYACLKGTILF 175
L + + S + D + ++ L F L++S +EYAC+K
Sbjct: 337 GELADVTAKYSPSDEELHRFSDE---GMEVIERLIYLYHKFHQLKVSNEEYACMKAINFL 393
Query: 176 NPDVPGLQAASHIGHLQQEAHWVLCE 201
N D+ GL +AS + L + +W +C+
Sbjct: 394 NQDIRGLTSASQLEQLNKR-YWYICQ 418
>gi|45545405 nuclear receptor subfamily 5, group A, member 2 isoform
1 [Homo sapiens]
Length = 541
Score = 53.5 bits (127), Expect = 2e-07
Identities = 50/205 (24%), Positives = 89/205 (43%), Gaps = 20/205 (9%)
Query: 56 CREALDVLAKTVAFLRNLPSFWQLPPQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVP 115
C+ A L V + R+ F +L DQ +LLQ CW L +L D + +V
Sbjct: 346 CKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLIL----DHIYRQVVHGKEG 401
Query: 116 SIL----KKILLEEPSSSGGS--GQLPDRPQPSLAAVQWLQCCLESFWSLELSPKEYACL 169
SI +++ +S G+ L Q +A ++ SL+ +E+ CL
Sbjct: 402 SIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLR----------SLQFDQREFVCL 451
Query: 170 KGTILFNPDVPGLQAASHIGHLQQEAHWVLCEVLEPWCPAAQGRLTRVLLTASTLKSIPT 229
K +LF+ DV L+ + +Q++ + L + P + ++LL +++I
Sbjct: 452 KFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISM 511
Query: 230 SLLGDLFFRPIIGDVDIAGLLGDML 254
L+++ + GDV LL +ML
Sbjct: 512 QAEEYLYYKHLNGDVPYNNLLIEML 536
>gi|4504343 nuclear receptor subfamily 5, group A, member 2 isoform
2 [Homo sapiens]
Length = 495
Score = 53.5 bits (127), Expect = 2e-07
Identities = 50/205 (24%), Positives = 89/205 (43%), Gaps = 20/205 (9%)
Query: 56 CREALDVLAKTVAFLRNLPSFWQLPPQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVP 115
C+ A L V + R+ F +L DQ +LLQ CW L +L D + +V
Sbjct: 300 CKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLIL----DHIYRQVVHGKEG 355
Query: 116 SIL----KKILLEEPSSSGGS--GQLPDRPQPSLAAVQWLQCCLESFWSLELSPKEYACL 169
SI +++ +S G+ L Q +A ++ SL+ +E+ CL
Sbjct: 356 SIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLR----------SLQFDQREFVCL 405
Query: 170 KGTILFNPDVPGLQAASHIGHLQQEAHWVLCEVLEPWCPAAQGRLTRVLLTASTLKSIPT 229
K +LF+ DV L+ + +Q++ + L + P + ++LL +++I
Sbjct: 406 KFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISM 465
Query: 230 SLLGDLFFRPIIGDVDIAGLLGDML 254
L+++ + GDV LL +ML
Sbjct: 466 QAEEYLYYKHLNGDVPYNNLLIEML 490
>gi|20070193 nuclear receptor subfamily 5, group A, member 1 [Homo
sapiens]
Length = 461
Score = 43.1 bits (100), Expect = 2e-04
Identities = 62/254 (24%), Positives = 102/254 (40%), Gaps = 22/254 (8%)
Query: 10 PCQGAASRPAILYALLSSSLKAVPRPRSRCL-CRQH----RPVQLCAPHRTCREALDVLA 64
P G + P ++ LL + R+R L C Q RP Q A CR A
Sbjct: 216 PFSGGPNVPELILQLLQLEPDE-DQVRARILGCLQEPTKSRPDQPAAFGLLCRMADQTFI 274
Query: 65 KTVAFLRNLPSFWQLPPQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVPSIL----KK 120
V + R F +L DQ LLQ CW L L D + +V SIL ++
Sbjct: 275 SIVDWARRCMVFKELEVADQMTLLQNCWSEL----LVFDHIYRQVQHGKEGSILLVTGQE 330
Query: 121 ILLEEPSSSGGSGQLPDRPQPSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVP 180
+ L ++ GS + V Q + +L+L +E+ CLK ILF+ D+
Sbjct: 331 VELTTVATQAGS--------LLHSLVLRAQELVLQLLALQLDRQEFVCLKFIILFSLDLK 382
Query: 181 GLQAASHIGHLQQEAHWVLCEVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPI 240
L + Q++A+ L + P + ++LL ++++ L+ + +
Sbjct: 383 FLNNHILVKDAQEKANAALLDYTLCHYPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHL 442
Query: 241 IGDVDIAGLLGDML 254
++ LL +ML
Sbjct: 443 GNEMPRNNLLIEML 456
>gi|45545429 estrogen-related receptor gamma isoform 2 [Homo
sapiens]
Length = 435
Score = 40.4 bits (93), Expect = 0.002
Identities = 43/192 (22%), Positives = 78/192 (40%), Gaps = 13/192 (6%)
Query: 63 LAKTVAFLRNLPSFWQLPPQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVPSILKKIL 122
L + + +++P F L DQ LLQ W + +LG+ +++FE I+
Sbjct: 253 LVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELVYADDY---IM 309
Query: 123 LEEPSSSGGSGQLPDRPQPSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVPGL 182
E+ S G L + A +Q ++ + S++L +E+ LK L N D +
Sbjct: 310 DEDQSKLAGLLDLNN------AILQ----LVKKYKSMKLEKEEFVTLKAIALANSDSMHI 359
Query: 183 QAASHIGHLQQEAHWVLCEVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPIIG 242
+ + LQ H L + R ++L+T L+ T + + + G
Sbjct: 360 EDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEG 419
Query: 243 DVDIAGLLGDML 254
V + L +ML
Sbjct: 420 KVPMHKLFLEML 431
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.138 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,190,028
Number of Sequences: 37866
Number of extensions: 545427
Number of successful extensions: 1478
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1375
Number of HSP's gapped (non-prelim): 85
length of query: 257
length of database: 18,247,518
effective HSP length: 100
effective length of query: 157
effective length of database: 14,460,918
effective search space: 2270364126
effective search space used: 2270364126
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.