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Search of human proteins with 13129048
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13129048 oligonucleotide/oligosaccharide-binding fold
containing 2B [Homo sapiens]
(211 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13129048 oligonucleotide/oligosaccharide-binding fold contain... 441 e-124
gi|72534722 oligonucleotide/oligosaccharide-binding fold contain... 223 7e-59
gi|18959210 WIRE protein [Homo sapiens] 45 3e-05
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 45 6e-05
gi|222418647 mucin 7, secreted precursor [Homo sapiens] 44 1e-04
gi|222418649 mucin 7, secreted precursor [Homo sapiens] 44 1e-04
gi|222418645 mucin 7, secreted precursor [Homo sapiens] 44 1e-04
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 44 1e-04
gi|163965366 nascent polypeptide-associated complex alpha subuni... 44 1e-04
gi|8922157 proline rich 13 isoform 1 [Homo sapiens] 44 1e-04
gi|237757310 synaptojanin 1 isoform a [Homo sapiens] 43 2e-04
gi|237757308 synaptojanin 1 isoform b [Homo sapiens] 43 2e-04
gi|239752594 PREDICTED: hypothetical protein, partial [Homo sapi... 43 2e-04
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 43 2e-04
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 42 3e-04
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 42 3e-04
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 42 3e-04
gi|50511941 EMI domain containing 1 [Homo sapiens] 42 4e-04
gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens] 42 5e-04
gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens] 42 5e-04
gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens] 42 5e-04
gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens] 42 5e-04
gi|54112101 ectodysplasin A isoform EDA-A2 [Homo sapiens] 41 6e-04
gi|4503449 ectodysplasin A isoform EDA-A1 [Homo sapiens] 41 6e-04
gi|19924099 synapsin I isoform Ia [Homo sapiens] 41 6e-04
gi|19924097 synapsin I isoform Ib [Homo sapiens] 41 6e-04
gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens] 41 8e-04
gi|111118994 brain-specific angiogenesis inhibitor 1 precursor [... 41 8e-04
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 40 0.001
gi|150170670 piccolo isoform 2 [Homo sapiens] 40 0.001
>gi|13129048 oligonucleotide/oligosaccharide-binding fold containing
2B [Homo sapiens]
Length = 211
Score = 441 bits (1133), Expect = e-124
Identities = 211/211 (100%), Positives = 211/211 (100%)
Query: 1 MTTETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGN 60
MTTETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGN
Sbjct: 1 MTTETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGN 60
Query: 61 LIQPGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYSTQQA 120
LIQPGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYSTQQA
Sbjct: 61 LIQPGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYSTQQA 120
Query: 121 PNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHTPSHPPSTRIT 180
PNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHTPSHPPSTRIT
Sbjct: 121 PNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHTPSHPPSTRIT 180
Query: 181 RSQPNHTPAGPPGPSSNPVSNGKETRRSSKR 211
RSQPNHTPAGPPGPSSNPVSNGKETRRSSKR
Sbjct: 181 RSQPNHTPAGPPGPSSNPVSNGKETRRSSKR 211
>gi|72534722 oligonucleotide/oligosaccharide-binding fold containing
2A [Homo sapiens]
Length = 204
Score = 223 bits (569), Expect = 7e-59
Identities = 117/206 (56%), Positives = 142/206 (68%), Gaps = 11/206 (5%)
Query: 6 FVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQPG 65
F++DIKPGLKNLN++FIVLE GRVTKTKDGHEVR+CKVADKTGSI ISVWD++G LIQPG
Sbjct: 10 FIRDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWDEIGGLIQPG 69
Query: 66 DIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYSTQQAPNKAV 125
DIIRLT+GYAS++KGCLTLYTGRGG+LQKIGEFCMVYSEVPNFSEPNP+Y QQ NK
Sbjct: 70 DIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPDYRGQQ--NKGA 127
Query: 126 QNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHTPSHPPSTRITRSQPN 185
Q++ ++ G P GNG+ GP H + Q
Sbjct: 128 QSEQKNNSMNSNMGTGTFGPV-----GNGVHT--GPESREHQFSHAGRSNGRGLINPQLQ 180
Query: 186 HTPAGPPGPSSNPVSNGKETRRSSKR 211
T + ++ +SNG++ RR+ KR
Sbjct: 181 GTASNQTVMTT--ISNGRDPRRAFKR 204
>gi|18959210 WIRE protein [Homo sapiens]
Length = 440
Score = 45.4 bits (106), Expect = 3e-05
Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Query: 113 PEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHTPS 172
P T +P+ P+ P+ G + P +NG + PP P P+ H S
Sbjct: 296 PPPPTSASPSLLSNRPPPPARDPPSRGAAPPPPPPVIRNGARDAPPPPP---PYRMHG-S 351
Query: 173 HPPSTRITRSQPNHTPAGPPGPSSNPVSNG 202
PPS P+ TPAGPP P P+ NG
Sbjct: 352 EPPSRGKPPPPPSRTPAGPPPPPPPPLRNG 381
Score = 31.6 bits (70), Expect = 0.51
Identities = 31/109 (28%), Positives = 38/109 (34%), Gaps = 11/109 (10%)
Query: 105 VPNFSEPNPEYSTQQAPNKAVQNDSNPSA---SQPTTGPSAASPASENQNGNGLSAPPG- 160
+P+ S PN ST + + P + PT P +S A L PG
Sbjct: 156 LPDLSRPNTTSSTGMKHSSSAPPPPPPGRRANAPPTPLPMHSSKAPAYNREKPLPPTPGQ 215
Query: 161 ---PG--GGPHPPHTPSHPPSTRITRSQPNHTPAGPPGPSSNP--VSNG 202
PG G P PP P I + A PP P P V NG
Sbjct: 216 RLHPGREGPPAPPPVKPPPSPVNIRTGPSGQSLAPPPPPYRQPPGVPNG 264
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 44.7 bits (104), Expect = 6e-05
Identities = 27/73 (36%), Positives = 29/73 (39%), Gaps = 9/73 (12%)
Query: 139 GPSAASPASENQNGNGLSAPPGPGG------GPHPPHTPSHP---PSTRITRSQPNHTPA 189
GP + S G GL PPGP G P PP P HP P P+ P
Sbjct: 121 GPPGEAGVSGPPGGIGLRGPPGPSGLPGLPGPPGPPGPPGHPGVLPEGATDLQCPSICPP 180
Query: 190 GPPGPSSNPVSNG 202
GPPGP P G
Sbjct: 181 GPPGPPGMPGFKG 193
Score = 32.3 bits (72), Expect = 0.30
Identities = 17/49 (34%), Positives = 18/49 (36%)
Query: 154 GLSAPPGPGGGPHPPHTPSHPPSTRITRSQPNHTPAGPPGPSSNPVSNG 202
GL PPGP G P P P + GPPGP P G
Sbjct: 56 GLPGPPGPKGAPGKPGKPGEAGLPGLPGVDGLTGRDGPPGPKGAPGERG 104
Score = 31.6 bits (70), Expect = 0.51
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 154 GLSAPPGPGGGPHPPHTPSHPPSTRITRSQPNHTPAGPPGPSSNPVSNGKETRRSSK 210
G P GP G P PP + HP + R P + GP G +P G + R K
Sbjct: 554 GRPGPAGPPGPPGPPGSIGHPGA----RGPPGY--RGPTGELGDPGPRGNQGDRGDK 604
Score = 28.9 bits (63), Expect = 3.3
Identities = 19/50 (38%), Positives = 20/50 (40%), Gaps = 6/50 (12%)
Query: 154 GLSAPPGPGGGPHPPHTPSHPPSTRITRSQPNHTPAGPPGPSSNPVSNGK 203
GL PPGP G P P + P P GPPGP P GK
Sbjct: 29 GLPGPPGPPGPPGKPGQDGID-----GEAGPPGLP-GPPGPKGAPGKPGK 72
>gi|222418647 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 43.9 bits (102), Expect = 1e-04
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 109 SEPNPEYSTQQAPNKAVQNDSNPSASQPT-TGPSAASPASENQNGNGLSAPPGPGGGPH- 166
+ P P+ +T P + + PS+S P T + +P++ Q SAPP P
Sbjct: 158 NSPAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPT 217
Query: 167 PPHTPSHPPSTRITRSQPNHTPAGPPGPSS 196
PP T PPS+ S P T A PP PS+
Sbjct: 218 PPATTPAPPSS----SAPPETTAAPPTPSA 243
Score = 40.8 bits (94), Expect = 8e-04
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 111 PNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHT 170
P P +TQ P+ + ++ +A+ PT + +P S + +APP P P +
Sbjct: 193 PTPSATTQAPPSSSAPPET--TAAPPTPPATTPAPPSSSAPPETTAAPPTPSATTPAPLS 250
Query: 171 PSHPPSTRITRSQPNHTPAGPPGPSSNP 198
S PP T P+ T P S+ P
Sbjct: 251 SSAPPETTAVPPTPSATTLDPSSASAPP 278
Score = 38.9 bits (89), Expect = 0.003
Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 16/113 (14%)
Query: 111 PNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHT 170
P P +T P+ + ++ +A+ PT + +P S + + PP P P +
Sbjct: 216 PTPPATTPAPPSSSAPPET--TAAPPTPSATTPAPLSSSAPPETTAVPPTPSATTLDPSS 273
Query: 171 PSHPPSTRITRSQPNHTPAGPPG--------------PSSNPVSNGKETRRSS 209
S PP T P+ T PP P+S+P + +T +S
Sbjct: 274 ASAPPETTAAPPTPSATTPAPPSSPAPQETTAAPITTPNSSPTTLAPDTSETS 326
Score = 38.5 bits (88), Expect = 0.004
Identities = 20/67 (29%), Positives = 28/67 (41%)
Query: 132 SASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHTPSHPPSTRITRSQPNHTPAGP 191
+A+ PT + +P S + +APP P P + S PP T P T P
Sbjct: 166 TAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPATTPAP 225
Query: 192 PGPSSNP 198
P S+ P
Sbjct: 226 PSSSAPP 232
Score = 38.5 bits (88), Expect = 0.004
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Query: 111 PNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHT 170
P P +T P+ + ++ +A+ PT + +P S + +APP P P +
Sbjct: 170 PTPSATTPAPPSSSAPPET--TAAPPTPSATTQAPPSSSAPPETTAAPPTPPATTPAPPS 227
Query: 171 PSHPPSTRITRSQPNHTPAGPPGPSSNP 198
S PP T P+ T P S+ P
Sbjct: 228 SSAPPETTAAPPTPSATTPAPLSSSAPP 255
Score = 35.8 bits (81), Expect = 0.027
Identities = 33/100 (33%), Positives = 43/100 (43%), Gaps = 15/100 (15%)
Query: 103 SEVPNFSEPNPEYSTQQAPNKAVQNDSNPSASQP--TTG----PSAASPASENQNGNGLS 156
++ P S PE +T P + PS+S P TT PSA +PA + S
Sbjct: 199 TQAPPSSSAPPE-TTAAPPTPPATTPAPPSSSAPPETTAAPPTPSATTPAPLSS-----S 252
Query: 157 APPGPGGGPHPPHTPSHPPSTRITRSQPNHTPAGPPGPSS 196
APP P P + PS + S P T A PP PS+
Sbjct: 253 APPETTAVPPTPSATTLDPS---SASAPPETTAAPPTPSA 289
Score = 35.4 bits (80), Expect = 0.036
Identities = 28/93 (30%), Positives = 36/93 (38%), Gaps = 12/93 (12%)
Query: 109 SEPNPEYSTQQAPNKAVQNDSNPSASQP--TTGPSAASPASENQNGNGLSAPPGPGGGPH 166
S P +T P + + PS+S P TT PA+ APP P
Sbjct: 181 SSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPAT-------TPAPPSSSAPPE 233
Query: 167 ---PPHTPSHPPSTRITRSQPNHTPAGPPGPSS 196
P TPS ++ S P T A PP PS+
Sbjct: 234 TTAAPPTPSATTPAPLSSSAPPETTAVPPTPSA 266
Score = 33.1 bits (74), Expect = 0.18
Identities = 32/101 (31%), Positives = 41/101 (40%), Gaps = 11/101 (10%)
Query: 107 NFSEPNPEY-STQQAPNKAVQNDSNPSASQP--TTGPSAASPASENQNGNGLS--APPGP 161
N S NP +T Q P+ + S + P T P A+ S +N N S A P
Sbjct: 97 NSSVVNPTLVATTQIPSVTFPSASTKITTLPNVTFLPQNATTISSRENVNTSSSVATLAP 156
Query: 162 GGGPHPPHTPSHPPSTRIT------RSQPNHTPAGPPGPSS 196
P P T + PP+ T S P T A PP PS+
Sbjct: 157 VNSPAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSA 197
Score = 27.3 bits (59), Expect = 9.7
Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 106 PNFSEPNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGP 165
P S P + AP + PSA+ ++A P + + P P P
Sbjct: 239 PTPSATTPAPLSSSAPPETTAVPPTPSATTLDPSSASAPPETTAAPPTPSATTPAPPSSP 298
Query: 166 HPPHTPSHPPSTRITRSQPNHTP 188
P T + P +T PN +P
Sbjct: 299 APQETTAAPITT------PNSSP 315
>gi|222418649 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 43.9 bits (102), Expect = 1e-04
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 109 SEPNPEYSTQQAPNKAVQNDSNPSASQPT-TGPSAASPASENQNGNGLSAPPGPGGGPH- 166
+ P P+ +T P + + PS+S P T + +P++ Q SAPP P
Sbjct: 158 NSPAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPT 217
Query: 167 PPHTPSHPPSTRITRSQPNHTPAGPPGPSS 196
PP T PPS+ S P T A PP PS+
Sbjct: 218 PPATTPAPPSS----SAPPETTAAPPTPSA 243
Score = 40.8 bits (94), Expect = 8e-04
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 111 PNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHT 170
P P +TQ P+ + ++ +A+ PT + +P S + +APP P P +
Sbjct: 193 PTPSATTQAPPSSSAPPET--TAAPPTPPATTPAPPSSSAPPETTAAPPTPSATTPAPLS 250
Query: 171 PSHPPSTRITRSQPNHTPAGPPGPSSNP 198
S PP T P+ T P S+ P
Sbjct: 251 SSAPPETTAVPPTPSATTLDPSSASAPP 278
Score = 38.9 bits (89), Expect = 0.003
Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 16/113 (14%)
Query: 111 PNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHT 170
P P +T P+ + ++ +A+ PT + +P S + + PP P P +
Sbjct: 216 PTPPATTPAPPSSSAPPET--TAAPPTPSATTPAPLSSSAPPETTAVPPTPSATTLDPSS 273
Query: 171 PSHPPSTRITRSQPNHTPAGPPG--------------PSSNPVSNGKETRRSS 209
S PP T P+ T PP P+S+P + +T +S
Sbjct: 274 ASAPPETTAAPPTPSATTPAPPSSPAPQETTAAPITTPNSSPTTLAPDTSETS 326
Score = 38.5 bits (88), Expect = 0.004
Identities = 20/67 (29%), Positives = 28/67 (41%)
Query: 132 SASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHTPSHPPSTRITRSQPNHTPAGP 191
+A+ PT + +P S + +APP P P + S PP T P T P
Sbjct: 166 TAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPATTPAP 225
Query: 192 PGPSSNP 198
P S+ P
Sbjct: 226 PSSSAPP 232
Score = 38.5 bits (88), Expect = 0.004
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Query: 111 PNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHT 170
P P +T P+ + ++ +A+ PT + +P S + +APP P P +
Sbjct: 170 PTPSATTPAPPSSSAPPET--TAAPPTPSATTQAPPSSSAPPETTAAPPTPPATTPAPPS 227
Query: 171 PSHPPSTRITRSQPNHTPAGPPGPSSNP 198
S PP T P+ T P S+ P
Sbjct: 228 SSAPPETTAAPPTPSATTPAPLSSSAPP 255
Score = 35.8 bits (81), Expect = 0.027
Identities = 33/100 (33%), Positives = 43/100 (43%), Gaps = 15/100 (15%)
Query: 103 SEVPNFSEPNPEYSTQQAPNKAVQNDSNPSASQP--TTG----PSAASPASENQNGNGLS 156
++ P S PE +T P + PS+S P TT PSA +PA + S
Sbjct: 199 TQAPPSSSAPPE-TTAAPPTPPATTPAPPSSSAPPETTAAPPTPSATTPAPLSS-----S 252
Query: 157 APPGPGGGPHPPHTPSHPPSTRITRSQPNHTPAGPPGPSS 196
APP P P + PS + S P T A PP PS+
Sbjct: 253 APPETTAVPPTPSATTLDPS---SASAPPETTAAPPTPSA 289
Score = 35.4 bits (80), Expect = 0.036
Identities = 28/93 (30%), Positives = 36/93 (38%), Gaps = 12/93 (12%)
Query: 109 SEPNPEYSTQQAPNKAVQNDSNPSASQP--TTGPSAASPASENQNGNGLSAPPGPGGGPH 166
S P +T P + + PS+S P TT PA+ APP P
Sbjct: 181 SSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPAT-------TPAPPSSSAPPE 233
Query: 167 ---PPHTPSHPPSTRITRSQPNHTPAGPPGPSS 196
P TPS ++ S P T A PP PS+
Sbjct: 234 TTAAPPTPSATTPAPLSSSAPPETTAVPPTPSA 266
Score = 33.1 bits (74), Expect = 0.18
Identities = 32/101 (31%), Positives = 41/101 (40%), Gaps = 11/101 (10%)
Query: 107 NFSEPNPEY-STQQAPNKAVQNDSNPSASQP--TTGPSAASPASENQNGNGLS--APPGP 161
N S NP +T Q P+ + S + P T P A+ S +N N S A P
Sbjct: 97 NSSVVNPTLVATTQIPSVTFPSASTKITTLPNVTFLPQNATTISSRENVNTSSSVATLAP 156
Query: 162 GGGPHPPHTPSHPPSTRIT------RSQPNHTPAGPPGPSS 196
P P T + PP+ T S P T A PP PS+
Sbjct: 157 VNSPAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSA 197
Score = 27.3 bits (59), Expect = 9.7
Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 106 PNFSEPNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGP 165
P S P + AP + PSA+ ++A P + + P P P
Sbjct: 239 PTPSATTPAPLSSSAPPETTAVPPTPSATTLDPSSASAPPETTAAPPTPSATTPAPPSSP 298
Query: 166 HPPHTPSHPPSTRITRSQPNHTP 188
P T + P +T PN +P
Sbjct: 299 APQETTAAPITT------PNSSP 315
>gi|222418645 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 43.9 bits (102), Expect = 1e-04
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 109 SEPNPEYSTQQAPNKAVQNDSNPSASQPT-TGPSAASPASENQNGNGLSAPPGPGGGPH- 166
+ P P+ +T P + + PS+S P T + +P++ Q SAPP P
Sbjct: 158 NSPAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPT 217
Query: 167 PPHTPSHPPSTRITRSQPNHTPAGPPGPSS 196
PP T PPS+ S P T A PP PS+
Sbjct: 218 PPATTPAPPSS----SAPPETTAAPPTPSA 243
Score = 40.8 bits (94), Expect = 8e-04
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 111 PNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHT 170
P P +TQ P+ + ++ +A+ PT + +P S + +APP P P +
Sbjct: 193 PTPSATTQAPPSSSAPPET--TAAPPTPPATTPAPPSSSAPPETTAAPPTPSATTPAPLS 250
Query: 171 PSHPPSTRITRSQPNHTPAGPPGPSSNP 198
S PP T P+ T P S+ P
Sbjct: 251 SSAPPETTAVPPTPSATTLDPSSASAPP 278
Score = 38.9 bits (89), Expect = 0.003
Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 16/113 (14%)
Query: 111 PNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHT 170
P P +T P+ + ++ +A+ PT + +P S + + PP P P +
Sbjct: 216 PTPPATTPAPPSSSAPPET--TAAPPTPSATTPAPLSSSAPPETTAVPPTPSATTLDPSS 273
Query: 171 PSHPPSTRITRSQPNHTPAGPPG--------------PSSNPVSNGKETRRSS 209
S PP T P+ T PP P+S+P + +T +S
Sbjct: 274 ASAPPETTAAPPTPSATTPAPPSSPAPQETTAAPITTPNSSPTTLAPDTSETS 326
Score = 38.5 bits (88), Expect = 0.004
Identities = 20/67 (29%), Positives = 28/67 (41%)
Query: 132 SASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHTPSHPPSTRITRSQPNHTPAGP 191
+A+ PT + +P S + +APP P P + S PP T P T P
Sbjct: 166 TAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPATTPAP 225
Query: 192 PGPSSNP 198
P S+ P
Sbjct: 226 PSSSAPP 232
Score = 38.5 bits (88), Expect = 0.004
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Query: 111 PNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHT 170
P P +T P+ + ++ +A+ PT + +P S + +APP P P +
Sbjct: 170 PTPSATTPAPPSSSAPPET--TAAPPTPSATTQAPPSSSAPPETTAAPPTPPATTPAPPS 227
Query: 171 PSHPPSTRITRSQPNHTPAGPPGPSSNP 198
S PP T P+ T P S+ P
Sbjct: 228 SSAPPETTAAPPTPSATTPAPLSSSAPP 255
Score = 35.8 bits (81), Expect = 0.027
Identities = 33/100 (33%), Positives = 43/100 (43%), Gaps = 15/100 (15%)
Query: 103 SEVPNFSEPNPEYSTQQAPNKAVQNDSNPSASQP--TTG----PSAASPASENQNGNGLS 156
++ P S PE +T P + PS+S P TT PSA +PA + S
Sbjct: 199 TQAPPSSSAPPE-TTAAPPTPPATTPAPPSSSAPPETTAAPPTPSATTPAPLSS-----S 252
Query: 157 APPGPGGGPHPPHTPSHPPSTRITRSQPNHTPAGPPGPSS 196
APP P P + PS + S P T A PP PS+
Sbjct: 253 APPETTAVPPTPSATTLDPS---SASAPPETTAAPPTPSA 289
Score = 35.4 bits (80), Expect = 0.036
Identities = 28/93 (30%), Positives = 36/93 (38%), Gaps = 12/93 (12%)
Query: 109 SEPNPEYSTQQAPNKAVQNDSNPSASQP--TTGPSAASPASENQNGNGLSAPPGPGGGPH 166
S P +T P + + PS+S P TT PA+ APP P
Sbjct: 181 SSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPAT-------TPAPPSSSAPPE 233
Query: 167 ---PPHTPSHPPSTRITRSQPNHTPAGPPGPSS 196
P TPS ++ S P T A PP PS+
Sbjct: 234 TTAAPPTPSATTPAPLSSSAPPETTAVPPTPSA 266
Score = 33.1 bits (74), Expect = 0.18
Identities = 32/101 (31%), Positives = 41/101 (40%), Gaps = 11/101 (10%)
Query: 107 NFSEPNPEY-STQQAPNKAVQNDSNPSASQP--TTGPSAASPASENQNGNGLS--APPGP 161
N S NP +T Q P+ + S + P T P A+ S +N N S A P
Sbjct: 97 NSSVVNPTLVATTQIPSVTFPSASTKITTLPNVTFLPQNATTISSRENVNTSSSVATLAP 156
Query: 162 GGGPHPPHTPSHPPSTRIT------RSQPNHTPAGPPGPSS 196
P P T + PP+ T S P T A PP PS+
Sbjct: 157 VNSPAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSA 197
Score = 27.3 bits (59), Expect = 9.7
Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 106 PNFSEPNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGP 165
P S P + AP + PSA+ ++A P + + P P P
Sbjct: 239 PTPSATTPAPLSSSAPPETTAVPPTPSATTLDPSSASAPPETTAAPPTPSATTPAPPSSP 298
Query: 166 HPPHTPSHPPSTRITRSQPNHTP 188
P T + P +T PN +P
Sbjct: 299 APQETTAAPITT------PNSSP 315
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 43.5 bits (101), Expect = 1e-04
Identities = 36/115 (31%), Positives = 46/115 (40%), Gaps = 22/115 (19%)
Query: 106 PNFSEPNPEYSTQQAPNKAVQNDSNPSASQ---PTTGPSAASPASENQ---NGNGLSAPP 159
P+ P+P+ QQ P Q+ S P +Q P G +A PAS + APP
Sbjct: 84 PHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPP 143
Query: 160 GPGGGPHP----------PHTPS-HPPSTRITRSQPN-----HTPAGPPGPSSNP 198
G G GP P P P PPS+ + + P PA PGP P
Sbjct: 144 GSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGP 198
Score = 35.0 bits (79), Expect = 0.047
Identities = 31/120 (25%), Positives = 36/120 (30%), Gaps = 17/120 (14%)
Query: 101 VYSEVPNFSEPNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAAS-PASENQNGNGLSAPP 159
V S P P P S P A+ P GP P G + P
Sbjct: 157 VTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGP 216
Query: 160 GPGGGP---------HPPHTPSHPPSTRITRSQPNH-------TPAGPPGPSSNPVSNGK 203
PGGGP PPH P P H P GP G S +S+ +
Sbjct: 217 KPGGGPGLSTPGGHPKPPHRGGGEPRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKISDSE 276
Score = 33.9 bits (76), Expect = 0.10
Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 10/86 (11%)
Query: 111 PNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHT 170
P P + AP A + PS+ PTT P A P +A PGPG GP
Sbjct: 151 PTPPPAVTSAPPGAPP-PTPPSSGVPTTPPQAGGPPPPP------AAVPGPGPGPKQGPG 203
Query: 171 PSHPPSTRITRSQPNHTPAGPPGPSS 196
P P ++ P G PG S+
Sbjct: 204 PGGPKGGKMPGGP---KPGGGPGLST 226
Score = 29.3 bits (64), Expect = 2.6
Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 149 NQNGNGLSAPPGPGG-GPHPPHTPSHPPSTRITRSQPNHTPAGPPGPSSNP 198
NQN + PGPG GP PP P PP + + P P P P P
Sbjct: 41 NQNRGPMG--PGPGQSGPKPP-IPPPPPHQQQQQPPPQQPPPQQPPPHQPP 88
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 43.5 bits (101), Expect = 1e-04
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 120 APNKAVQNDSNPSASQPTTGPSAAS--PASENQNGNGLSAPPGPGGGPHPPHTPSHPPST 177
APN AV +P T+ P A PA+ + G P P G P PP PPS
Sbjct: 1286 APNPAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVT--PPSP 1343
Query: 178 RITRSQPNHTPAGPPGPSSNPVSNG 202
+ T + P TP+ GP++ G
Sbjct: 1344 KGTPTLPATTPSSKGGPTTPSSKEG 1368
Score = 40.0 bits (92), Expect = 0.001
Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 6/90 (6%)
Query: 111 PNPEYSTQQAPNKAVQNDSN------PSASQPTTGPSAASPASENQNGNGLSAPPGPGGG 164
P P +T +P S P+A+ P+ A+P+ + + PP P GG
Sbjct: 940 PTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGG 999
Query: 165 PHPPHTPSHPPSTRITRSQPNHTPAGPPGP 194
P P P +T P +PA P P
Sbjct: 1000 PATPSPKGAPTPPAVTPPSPKGSPAATPFP 1029
Score = 40.0 bits (92), Expect = 0.001
Identities = 34/125 (27%), Positives = 47/125 (37%), Gaps = 22/125 (17%)
Query: 106 PNFSEPNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGP 165
P + P+P+ P K P+A+ P+ A+P + + PP P GGP
Sbjct: 1244 PAATPPSPKGGPATPPPKGAPTP--PAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGP 1301
Query: 166 ----------HPPHTPSHP------PSTRITRSQPNHTPAGPPG----PSSNPVSNGKET 205
P TP P P + + P TP P G P++ P S G T
Sbjct: 1302 ATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPT 1361
Query: 206 RRSSK 210
SSK
Sbjct: 1362 TPSSK 1366
Score = 38.9 bits (89), Expect = 0.003
Identities = 27/91 (29%), Positives = 35/91 (38%), Gaps = 6/91 (6%)
Query: 116 STQQAPNKAVQNDSNPSASQPTTGPSAAS--PASENQNGNGLSAPPGPGGGPHPP-HTPS 172
S + AP +P T P A PA+ + G A P P G P PP TP
Sbjct: 935 SPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPP 994
Query: 173 HP---PSTRITRSQPNHTPAGPPGPSSNPVS 200
P P+T + P PP P +P +
Sbjct: 995 SPKGGPATPSPKGAPTPPAVTPPSPKGSPAA 1025
Score = 38.9 bits (89), Expect = 0.003
Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 15/106 (14%)
Query: 111 PNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAAS--PASENQNGNGLSAPPGPGGGPHPP 168
P+P++ AP +P T P A PA+ + G A P P G P PP
Sbjct: 957 PSPKW----APTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPP 1012
Query: 169 --------HTPSHPPSTRITRSQPNHTPAGPPG-PSSNPVSNGKET 205
+P+ P + + P TP P G P++ P+ G T
Sbjct: 1013 AVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPT 1058
Score = 38.5 bits (88), Expect = 0.004
Identities = 29/116 (25%), Positives = 44/116 (37%), Gaps = 18/116 (15%)
Query: 106 PNFSEPNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGG- 164
P + P+P+ P K + P+A+ P+ A+P+ + + PP P GG
Sbjct: 1152 PAATPPSPKGGLATPPPKGAP--TTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGL 1209
Query: 165 --PHPPHTPSHP-------------PSTRITRSQPNHTPAGPPGPSSNPVSNGKET 205
P P P+ P PS + + P TP P G + P G T
Sbjct: 1210 ATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPT 1265
Score = 38.5 bits (88), Expect = 0.004
Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 3/95 (3%)
Query: 106 PNFSEPNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGP 165
P + P+P+ S P K P+ + P+ + PA+ + G + P G
Sbjct: 1313 PAATPPSPKGSPGTPPPKGAPTP--PAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPT 1370
Query: 166 HPPHTPSHPPSTRITRSQPNHTPAGPPGPSSNPVS 200
P TPSH +T P PA P P +P S
Sbjct: 1371 PPAATPSHKGGPAMTPPSPKRGPA-IPSPKGDPTS 1404
Score = 38.1 bits (87), Expect = 0.005
Identities = 29/116 (25%), Positives = 44/116 (37%), Gaps = 18/116 (15%)
Query: 106 PNFSEPNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGG- 164
P + P+P+ P+K + P+A+ P+ A+P + + PP P GG
Sbjct: 1106 PAATPPSPKGGLATPPHKGAP--TTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGL 1163
Query: 165 --PHPPHTPSHP-------------PSTRITRSQPNHTPAGPPGPSSNPVSNGKET 205
P P P+ P PS + + P TP P G + P G T
Sbjct: 1164 ATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPT 1219
Score = 37.4 bits (85), Expect = 0.009
Identities = 29/116 (25%), Positives = 43/116 (37%), Gaps = 18/116 (15%)
Query: 106 PNFSEPNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGG- 164
P + P+P+ P K + P+A+ P+ A+P + + PP P GG
Sbjct: 1129 PAATPPSPKGGLATPPPKGAP--TTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGL 1186
Query: 165 --PHPPHTPSHP-------------PSTRITRSQPNHTPAGPPGPSSNPVSNGKET 205
P P P+ P PS + + P TP P G + P G T
Sbjct: 1187 ATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPT 1242
Score = 37.0 bits (84), Expect = 0.012
Identities = 29/105 (27%), Positives = 37/105 (35%), Gaps = 17/105 (16%)
Query: 118 QQAPNKAVQNDSNPSASQPTTGPSAASPASENQNG----------NGLSAPPGPGGGPHP 167
++ P +V N P T P A S + G+ A P P G P P
Sbjct: 883 KETPTPSVVNLPFPKEGPATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTP 942
Query: 168 P-HTPSHP------PSTRITRSQPNHTPAGPPGPSSNPVSNGKET 205
P TP P PS + + P TP P G + P G T
Sbjct: 943 PAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPT 987
Score = 37.0 bits (84), Expect = 0.012
Identities = 27/94 (28%), Positives = 36/94 (38%), Gaps = 10/94 (10%)
Query: 116 STQQAPNKAVQNDSNPSASQPTTGPSAA--SPASENQNGNGLSAPPGPGGGPHPPHTPSH 173
S + AP +P T P A +PA+ + G A P P G P PP +
Sbjct: 1213 SPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPP--AAT 1270
Query: 174 PPS------TRITRSQPNHTPAGPPGPSSNPVSN 201
PPS T + PN PP P P ++
Sbjct: 1271 PPSLKGGLATPPHKGAPNPAVVTPPSPKGGPATS 1304
Score = 36.6 bits (83), Expect = 0.016
Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 19/106 (17%)
Query: 118 QQAPNKAVQNDSNPSASQPTTGPSA--ASPASENQNGNGLSAPPGPGGGPHPPH------ 169
+QAP ++ + S+P ++ T P ASP+ + + PP P GGP P
Sbjct: 906 KQAPALSMTS-SSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSPKWAPT 964
Query: 170 ----TPSHP------PSTRITRSQPNHTPAGPPGPSSNPVSNGKET 205
TP P PS + + P TP P G + P G T
Sbjct: 965 PPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPT 1010
Score = 36.2 bits (82), Expect = 0.021
Identities = 33/118 (27%), Positives = 43/118 (36%), Gaps = 15/118 (12%)
Query: 103 SEVPNFSEPNPEYSTQQAP-NKAVQNDSNPSASQPTTGPSAAS-------PASENQNGNG 154
S P + P+P+ S P K + P GP+ S PA+ + G
Sbjct: 1033 STPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKG 1092
Query: 155 LSAPPGPGGGPHPP-HTPSHP------PSTRITRSQPNHTPAGPPGPSSNPVSNGKET 205
A P P G P PP TP P P + + P TP P G + P G T
Sbjct: 1093 GPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGAPT 1150
Score = 35.4 bits (80), Expect = 0.036
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 2/86 (2%)
Query: 106 PNFSEPNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGP 165
P + P+P+ T P + P+ GP+ + ++ G ++ PP P GP
Sbjct: 1336 PAVTPPSPK-GTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPAMT-PPSPKRGP 1393
Query: 166 HPPHTPSHPPSTRITRSQPNHTPAGP 191
P P S + P PA P
Sbjct: 1394 AIPSPKGDPTSPAVIPLSPKKAPATP 1419
Score = 33.9 bits (76), Expect = 0.10
Identities = 31/102 (30%), Positives = 41/102 (40%), Gaps = 15/102 (14%)
Query: 111 PNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGP-HPPH 169
P P +T +P + P PTT P+A P+ + GL+ PP P G P P
Sbjct: 1103 PMPPAATPPSPKGGLATP--PHKGAPTT-PAATPPSPKG----GLATPP-PKGAPTTPAA 1154
Query: 170 TPSHP------PSTRITRSQPNHTPAGPPGPSSNPVSNGKET 205
TP P P + + P TP P G + P G T
Sbjct: 1155 TPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPT 1196
Score = 33.5 bits (75), Expect = 0.14
Identities = 27/101 (26%), Positives = 37/101 (36%), Gaps = 13/101 (12%)
Query: 111 PNPEYSTQQAPNKAVQNDSN------PSASQPTTGPSAASPASENQNGNGLSAPPGPGGG 164
P P +T +P S P+A+ P+ A+P + + PP P GG
Sbjct: 1080 PTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGG 1139
Query: 165 PHPPHTPSHPPSTRITRSQPNHTPAGPPGPSSNPVSNGKET 205
P P P+T P TP P G + P G T
Sbjct: 1140 LATP-PPKGAPTT------PAATPPSPKGGLATPPPKGAPT 1173
Score = 33.1 bits (74), Expect = 0.18
Identities = 27/111 (24%), Positives = 37/111 (33%), Gaps = 21/111 (18%)
Query: 111 PNPEYSTQQAPNKAVQNDSNPSASQPTT-------GPSAASPASENQNGNGLSAPPGPGG 163
P P +T +P S A P G AA+P + + + PP P G
Sbjct: 986 PTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKG 1045
Query: 164 GPH----PPHTPSHP----------PSTRITRSQPNHTPAGPPGPSSNPVS 200
P P P+ P P+T + P A PP P P +
Sbjct: 1046 SPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPAT 1096
Score = 32.0 bits (71), Expect = 0.39
Identities = 25/83 (30%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 116 STQQAPNKAVQNDSNPSASQPTTGPSAA--SPASENQNGNGLSAPPGPGGGP-HPPHTPS 172
S + AP +P T P A +PA+ + G A P P G P P TP
Sbjct: 1190 SPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPP 1249
Query: 173 HP---PSTRITRSQPNHTPAGPP 192
P P+T + P A PP
Sbjct: 1250 SPKGGPATPPPKGAPTPPAATPP 1272
Score = 32.0 bits (71), Expect = 0.39
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 13/83 (15%)
Query: 129 SNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGG-PHPPH---------TPSHP---P 175
+ P+A+ P+ A+P + + PP GG PPH TP P P
Sbjct: 1242 TTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGP 1301
Query: 176 STRITRSQPNHTPAGPPGPSSNP 198
+T + P A PP P +P
Sbjct: 1302 ATSPPKGAPTPPAATPPSPKGSP 1324
Score = 31.6 bits (70), Expect = 0.51
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 9/83 (10%)
Query: 131 PSASQPTTGPSAASPASENQNGNGLSAPPGPGGG---PHPPHTPSHPPSTRITRSQPNHT 187
PS + P+ SP+ + PP P G P P TP+ PP T P+
Sbjct: 1594 PSPKELLIPPAVTSPSPKEAPTPPAVTPPSPEKGPATPAPKGTPTSPPVT------PSSL 1647
Query: 188 PAGPPGPSSNPVSNGKETRRSSK 210
P P+S G ++SK
Sbjct: 1648 KDSPTSPASVTCKMGATVPQASK 1670
Score = 30.8 bits (68), Expect = 0.88
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Query: 116 STQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHTPSHPP 175
S ++AP V + + S+ P A +P S + A P GGP P + P
Sbjct: 1411 SPKKAPATPVTREGAATPSKGDLTPPAVTPVSLKK----APATSAPKGGPATPSSKGDPT 1466
Query: 176 STRITRSQPNHTPA 189
+T P PA
Sbjct: 1467 LPAVTPPSPKEPPA 1480
>gi|8922157 proline rich 13 isoform 1 [Homo sapiens]
Length = 148
Score = 43.5 bits (101), Expect = 1e-04
Identities = 30/98 (30%), Positives = 38/98 (38%), Gaps = 5/98 (5%)
Query: 106 PNFSEPNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNG-NGLSAPPGPGGG 164
PN +P P PN SNP+ P P P +G A P PGG
Sbjct: 4 PNAGQPGPN---PYPPNIGCPGGSNPAHPPPINPPFPPGPCPPPPGAPHGNPAFP-PGGP 59
Query: 165 PHPPHTPSHPPSTRITRSQPNHTPAGPPGPSSNPVSNG 202
PHP P +P + P + P P P NP++ G
Sbjct: 60 PHPVPQPGYPGCQPLGPYPPPYPPPAPGIPPVNPLAPG 97
>gi|237757310 synaptojanin 1 isoform a [Homo sapiens]
Length = 1612
Score = 43.1 bits (100), Expect = 2e-04
Identities = 33/105 (31%), Positives = 43/105 (40%), Gaps = 5/105 (4%)
Query: 105 VPNFSEPNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAA-SPASENQNGNGLSAPPGPGG 163
+P P + P + V + P+ Q PS A SPA + G+ APP PG
Sbjct: 1133 LPQKDPAQPLEPKRPPPPRPVAPPTRPAPPQRPPPPSGARSPAPTRKEFGGIGAPPSPGV 1192
Query: 164 GPHPPHTPSHPPSTR---ITRSQPNHTPAGPPGPSSNPVSNGKET 205
P P +TR I RSQP+ AG GP S + T
Sbjct: 1193 ARREMEAPKSPGTTRKDNIGRSQPS-PQAGLAGPGPAGYSTARPT 1236
Score = 32.0 bits (71), Expect = 0.39
Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 5/94 (5%)
Query: 108 FSEPNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHP 167
+S P + A Q+ + SA + T P + S SE G+ P P
Sbjct: 1230 YSTARPTIPPRAGVISAPQSHARASAGRLT--PESQSKTSETSKGSTFLPEPLKPQAAFP 1287
Query: 168 PHTPSHPPSTRITRSQPNHTPAGPPGPSSNPVSN 201
P + PP+ R+ Q P P P S P N
Sbjct: 1288 PQSSLPPPAQRL---QEPLVPVAAPMPQSGPQPN 1318
Score = 30.0 bits (66), Expect = 1.5
Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 12/97 (12%)
Query: 112 NPEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHTP 171
+P S P+ ++ PS T GP P++++ + A P P P P P
Sbjct: 1092 SPTISEGPVPSLPIRPSRAPSR---TPGP----PSAQSSPIDAQPATPLPQKDPAQPLEP 1144
Query: 172 SHPPSTR----ITRSQPNHTPAGPPGPSSNPVSNGKE 204
PP R TR P P PP + +P KE
Sbjct: 1145 KRPPPPRPVAPPTRPAPPQRPP-PPSGARSPAPTRKE 1180
Score = 27.3 bits (59), Expect = 9.7
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 140 PSAASPASENQNGNGLSAPPGPGGGPHPPHTPSHPPSTRITRSQ-PNHTPAGPPGPSSNP 198
P P+S + G S+ P P + PS I S+ P+ TP GPP S+P
Sbjct: 1066 PQHLQPSSSSGLGTSPSSSPRTSPCQSPTISEGPVPSLPIRPSRAPSRTP-GPPSAQSSP 1124
Query: 199 V 199
+
Sbjct: 1125 I 1125
>gi|237757308 synaptojanin 1 isoform b [Homo sapiens]
Length = 1350
Score = 43.1 bits (100), Expect = 2e-04
Identities = 33/105 (31%), Positives = 43/105 (40%), Gaps = 5/105 (4%)
Query: 105 VPNFSEPNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAA-SPASENQNGNGLSAPPGPGG 163
+P P + P + V + P+ Q PS A SPA + G+ APP PG
Sbjct: 1133 LPQKDPAQPLEPKRPPPPRPVAPPTRPAPPQRPPPPSGARSPAPTRKEFGGIGAPPSPGV 1192
Query: 164 GPHPPHTPSHPPSTR---ITRSQPNHTPAGPPGPSSNPVSNGKET 205
P P +TR I RSQP+ AG GP S + T
Sbjct: 1193 ARREMEAPKSPGTTRKDNIGRSQPS-PQAGLAGPGPAGYSTARPT 1236
Score = 32.0 bits (71), Expect = 0.39
Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 5/94 (5%)
Query: 108 FSEPNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHP 167
+S P + A Q+ + SA + T P + S SE G+ P P
Sbjct: 1230 YSTARPTIPPRAGVISAPQSHARASAGRLT--PESQSKTSETSKGSTFLPEPLKPQAAFP 1287
Query: 168 PHTPSHPPSTRITRSQPNHTPAGPPGPSSNPVSN 201
P + PP+ R+ Q P P P S P N
Sbjct: 1288 PQSSLPPPAQRL---QEPLVPVAAPMPQSGPQPN 1318
Score = 30.0 bits (66), Expect = 1.5
Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 12/97 (12%)
Query: 112 NPEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHTP 171
+P S P+ ++ PS T GP P++++ + A P P P P P
Sbjct: 1092 SPTISEGPVPSLPIRPSRAPSR---TPGP----PSAQSSPIDAQPATPLPQKDPAQPLEP 1144
Query: 172 SHPPSTR----ITRSQPNHTPAGPPGPSSNPVSNGKE 204
PP R TR P P PP + +P KE
Sbjct: 1145 KRPPPPRPVAPPTRPAPPQRPP-PPSGARSPAPTRKE 1180
Score = 27.3 bits (59), Expect = 9.7
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 140 PSAASPASENQNGNGLSAPPGPGGGPHPPHTPSHPPSTRITRSQ-PNHTPAGPPGPSSNP 198
P P+S + G S+ P P + PS I S+ P+ TP GPP S+P
Sbjct: 1066 PQHLQPSSSSGLGTSPSSSPRTSPCQSPTISEGPVPSLPIRPSRAPSRTP-GPPSAQSSP 1124
Query: 199 V 199
+
Sbjct: 1125 I 1125
>gi|239752594 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 673
Score = 42.7 bits (99), Expect = 2e-04
Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 107 NFSEPNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGN--GLSAPPGPGGG 164
+ S P S + P++A PS + PT PS ASP + GLS+ P G
Sbjct: 330 SISRTPPRASITRTPSRASPT-GKPSTASPTGTPSRASPTGSPSTASLTGLSSTASPTGT 388
Query: 165 PHPPHTPSHPPSTR-ITRSQPNHTPAG 190
P P +P+ PST +TR P +P G
Sbjct: 389 P-PRASPTGTPSTASLTRKPPRASPTG 414
Score = 31.6 bits (70), Expect = 0.51
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Query: 113 PEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHTP- 171
P S + P+ A S PS + TT PS AS + L+ P PP
Sbjct: 108 PRASLMRRPSTASLTRS-PSRASLTTTPSRASLSMTPSTAAALTMPSRASLTRTPPRASL 166
Query: 172 -SHPPSTRITRSQPNHTPAGPPGPSS 196
P + +TR+ P +P G P +S
Sbjct: 167 TMTPSTASLTRTPPRASPTGMPSRTS 192
Score = 31.6 bits (70), Expect = 0.51
Identities = 33/122 (27%), Positives = 45/122 (36%), Gaps = 27/122 (22%)
Query: 116 STQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAP--PGPGGGP---HPPHT 170
S + P +A + P AS PT PS ASP + +P P G P P +
Sbjct: 429 SPTRTPPRASPTGTPPRAS-PTGTPSRASPTGTQSTASPTGSPSTASPTGSPSTASPTGS 487
Query: 171 PSHPPSTRI-------------------TRSQPNHTP--AGPPGPSSNPVSNGKETRRSS 209
PS TR +R+ P TP A P G S ++ G +R +
Sbjct: 488 PSRASLTRTPSRASLTKMESTASITRTPSRASPTWTPSTASPTGSPSTALAMGSPSRAAL 547
Query: 210 KR 211
R
Sbjct: 548 TR 549
Score = 28.9 bits (63), Expect = 3.3
Identities = 24/85 (28%), Positives = 31/85 (36%), Gaps = 19/85 (22%)
Query: 131 PSASQPTTGPSAASPASENQNGNGLSAP--------PGPGGGPHPPH-----TPSHPPST 177
PS + PT PS ASP + +P P P TPS T
Sbjct: 515 PSRASPTWTPSTASPTGSPSTALAMGSPSRAALTRTPSRASLTRTPSRASLTTPSRASLT 574
Query: 178 R------ITRSQPNHTPAGPPGPSS 196
R +TR P+ +P G P +S
Sbjct: 575 RTPSTVLLTRMPPSASPTGMPSRTS 599
Score = 28.1 bits (61), Expect = 5.7
Identities = 20/77 (25%), Positives = 27/77 (35%), Gaps = 11/77 (14%)
Query: 131 PSASQPTTGPSAASPASENQNGNGLSAPP-----------GPGGGPHPPHTPSHPPSTRI 179
PS + PT PS+A + + PP P G P PP
Sbjct: 595 PSRTSPTGMPSSALLTKMDSTASITRTPPRASPTETPPRASPTGTPPRASPTGTPPRASP 654
Query: 180 TRSQPNHTPAGPPGPSS 196
T + P +P G P +S
Sbjct: 655 TGTPPRASPTGTPSRAS 671
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 42.7 bits (99), Expect = 2e-04
Identities = 31/100 (31%), Positives = 38/100 (38%), Gaps = 11/100 (11%)
Query: 106 PNFSEPNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGG-- 163
P S P P YST P+ + + +P G PAS + +G S P G
Sbjct: 924 PTTSPPEPPYSTPPVPSSSGRLTPSPRGGPFNPGSGGPLPASSPASFDGPSPPDTRVGSR 983
Query: 164 -------GPHPP--HTPSHPPSTRITRSQPNHTPAGPPGP 194
GP PP H P H QP+H A PP P
Sbjct: 984 EKSLYHSGPLPPAHHHPPHHHHHHAPPPQPHHHHAHPPHP 1023
Score = 36.2 bits (82), Expect = 0.021
Identities = 38/129 (29%), Positives = 49/129 (37%), Gaps = 21/129 (16%)
Query: 79 KGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYSTQQAPNKAVQNDSNPSASQPTT 138
KG L T G+ QK G +P P S Q P A ++ N S PT
Sbjct: 1107 KGPLVKQTKVEGEPQKGGG-------LPPAPSPTSPASPQPPPAVAAPSEKN-SIPIPTI 1158
Query: 139 ---GPSAASPASENQNGNGLSAPP--------GPGGGPHPPHTPSHPPSTRITRSQPNHT 187
PS +S +Q + + PP G GGG P P+ P P T
Sbjct: 1159 IIKAPSTSSSGRSSQGSSTEAEPPTQPEPTGGGGGGGSSPSPAPAMSPVP--PSPSPVPT 1216
Query: 188 PAGPPGPSS 196
PA P GP++
Sbjct: 1217 PASPSGPAT 1225
Score = 35.4 bits (80), Expect = 0.036
Identities = 27/91 (29%), Positives = 32/91 (35%), Gaps = 4/91 (4%)
Query: 108 FSEPNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHP 167
FS P S P Q S PSA PTT S+ + S + + P G HP
Sbjct: 451 FSAPGAASSGAPGPTSGSQGQSQPSA--PTTKLSSGTLRSASSPRGARAR--SPSRGRHP 506
Query: 168 PHTPSHPPSTRITRSQPNHTPAGPPGPSSNP 198
P + P PAG G S P
Sbjct: 507 EDAKRQPRGRPSSSGTPREGPAGGTGGSGGP 537
Score = 33.9 bits (76), Expect = 0.10
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 14/104 (13%)
Query: 104 EVPNFSEPNPEYSTQQAPNKAVQNDSNPSASQPTT--GPSAASPASENQNGNGLSAPPGP 161
E P+F P P +Q A ++D P + P S + P SE+ PP
Sbjct: 873 ERPSFLPPGPGLMLRQKSIGAAEDD-RPYLAPPAMKFSRSLSVPGSED------IPPPPT 925
Query: 162 GGGPHPPH-TPSHPPST-RIT---RSQPNHTPAGPPGPSSNPVS 200
P PP+ TP P S+ R+T R P + +G P P+S+P S
Sbjct: 926 TSPPEPPYSTPPVPSSSGRLTPSPRGGPFNPGSGGPLPASSPAS 969
Score = 30.8 bits (68), Expect = 0.88
Identities = 26/104 (25%), Positives = 37/104 (35%), Gaps = 6/104 (5%)
Query: 97 EFCMVYSEVPNFSEPNPEYSTQQAPNKAVQNDSNP----SASQPTTGPSAASPASENQNG 152
EF + + + P P + P A P +A+ PT +A+S S +
Sbjct: 1572 EFSNSFEKPESPLTPGPPHPLPDTPAPATPLPPVPPPAVAAAPPTLDSTASSLTSYDSEV 1631
Query: 153 NGLSAPPGPGGGPHPPHTPSHPPSTRITRSQPNHTPAGPPGPSS 196
L+ G P PH P P + P P PPG S
Sbjct: 1632 ATLTQ--GASAAPGDPHPPGPPAPAAPAPAAPQPGPDPPPGTDS 1673
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 42.4 bits (98), Expect = 3e-04
Identities = 24/58 (41%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 145 PASENQNGNGLSAPPGPGGGPHPPHTPSHPPSTRITRSQPNHTPAGPPGPSSNPVSNG 202
P + G G GP G P PP PS P R T S P P GPPGP P + G
Sbjct: 1382 PGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPG--PPGPPGPPGPPGTMG 1437
Score = 37.0 bits (84), Expect = 0.012
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 154 GLSAPPGPGGGPHPPHTPSHPPSTRITRSQPNHTPAGPPGPSSNPVSNG 202
G+ PPGP G P PP TP + + S+P P G PG P G
Sbjct: 1252 GMPGPPGPPGPPGPPGTPVYDSNVFAESSRPG--PPGLPGNQGPPGPKG 1298
Score = 34.3 bits (77), Expect = 0.079
Identities = 21/70 (30%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 106 PNFSEPNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNG-NGLSAPPGPGGG 164
P P + P + Q S A P S +P G +GL+ PGP G
Sbjct: 949 PGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGP 1008
Query: 165 PHPPHTPSHP 174
P PP P P
Sbjct: 1009 PGPPGPPGPP 1018
Score = 32.3 bits (72), Expect = 0.30
Identities = 21/63 (33%), Positives = 22/63 (34%), Gaps = 16/63 (25%)
Query: 152 GNGLSAPPGPGG----------------GPHPPHTPSHPPSTRITRSQPNHTPAGPPGPS 195
G+ L PPGP G G P P PP Q P GPPGP
Sbjct: 1349 GSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPP 1408
Query: 196 SNP 198
S P
Sbjct: 1409 SFP 1411
Score = 30.8 bits (68), Expect = 0.88
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 152 GNGLSAPPGPGGGPHPPHTPSHP-----PSTRITRSQPNHTPA--GPPGP 194
G G+ PGP G P PP P P +R P P GPPGP
Sbjct: 1247 GFGMRGMPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGP 1296
Score = 30.4 bits (67), Expect = 1.1
Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 13/79 (16%)
Query: 137 TTGPSAASPASENQNGN-GLSAPPGPGGGPHPPHTPSHP----------PSTRITRSQPN 185
T G + Q G G+ PPG G P P P P P+ ++ P
Sbjct: 743 TPGGRVKEGGLKGQKGEPGVPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPG 802
Query: 186 HTPAGPPGPSSNPVSNGKE 204
P GPPGP + G++
Sbjct: 803 --PQGPPGPPGRDGTPGRD 819
Score = 29.6 bits (65), Expect = 2.0
Identities = 25/92 (27%), Positives = 31/92 (33%), Gaps = 23/92 (25%)
Query: 142 AASPASENQNGN-GLSAPPGPGGGPHP------PHTPSHPPSTRIT--RSQPNHT----- 187
A PA + G G PPGP G P P P P + + +P
Sbjct: 1190 ALGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFG 1249
Query: 188 ---------PAGPPGPSSNPVSNGKETRRSSK 210
P GPPGP PV + SS+
Sbjct: 1250 MRGMPGPPGPPGPPGPPGTPVYDSNVFAESSR 1281
Score = 27.7 bits (60), Expect = 7.4
Identities = 29/93 (31%), Positives = 32/93 (34%), Gaps = 17/93 (18%)
Query: 128 DSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHTPS--HPPSTRITRS--- 182
D+ P T G + G G PPGP G P PP PS H T I
Sbjct: 833 DTGPQGFPGTPG-DVGPKGDKGDPGVGERGPPGPQGPPGPP-GPSFRHDKLTFIDMEGSG 890
Query: 183 ---------QPNHTPAGPPGPSSNPVSNGKETR 206
P P GPPGP P G+ R
Sbjct: 891 FGGDLEALRGPRGFP-GPPGPPGVPGLPGEPGR 922
Score = 27.7 bits (60), Expect = 7.4
Identities = 25/89 (28%), Positives = 29/89 (32%), Gaps = 24/89 (26%)
Query: 134 SQPTTGPSAAS--PASENQNG-NGLSAPPGPGGGPHPPHTPSHP--------PSTRITRS 182
S GP+ P E G GL PPGP G PP P + ++
Sbjct: 927 SSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKG 986
Query: 183 QPNHT-------------PAGPPGPSSNP 198
P PAGPPGP P
Sbjct: 987 APGPAGARGESGLAGAPGPAGPPGPPGPP 1015
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 42.4 bits (98), Expect = 3e-04
Identities = 24/58 (41%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 145 PASENQNGNGLSAPPGPGGGPHPPHTPSHPPSTRITRSQPNHTPAGPPGPSSNPVSNG 202
P + G G GP G P PP PS P R T S P P GPPGP P + G
Sbjct: 967 PGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPG--PPGPPGPPGPPGTMG 1022
Score = 37.0 bits (84), Expect = 0.012
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 154 GLSAPPGPGGGPHPPHTPSHPPSTRITRSQPNHTPAGPPGPSSNPVSNG 202
G+ PPGP G P PP TP + + S+P P G PG P G
Sbjct: 837 GMPGPPGPPGPPGPPGTPVYDSNVFAESSRPG--PPGLPGNQGPPGPKG 883
Score = 34.3 bits (77), Expect = 0.079
Identities = 21/70 (30%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 106 PNFSEPNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNG-NGLSAPPGPGGG 164
P P + P + Q S A P S +P G +GL+ PGP G
Sbjct: 534 PGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGP 593
Query: 165 PHPPHTPSHP 174
P PP P P
Sbjct: 594 PGPPGPPGPP 603
Score = 32.3 bits (72), Expect = 0.30
Identities = 21/63 (33%), Positives = 22/63 (34%), Gaps = 16/63 (25%)
Query: 152 GNGLSAPPGPGG----------------GPHPPHTPSHPPSTRITRSQPNHTPAGPPGPS 195
G+ L PPGP G G P P PP Q P GPPGP
Sbjct: 934 GSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPP 993
Query: 196 SNP 198
S P
Sbjct: 994 SFP 996
Score = 30.8 bits (68), Expect = 0.88
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 152 GNGLSAPPGPGGGPHPPHTPSHP-----PSTRITRSQPNHTPA--GPPGP 194
G G+ PGP G P PP P P +R P P GPPGP
Sbjct: 832 GFGMRGMPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGP 881
Score = 30.4 bits (67), Expect = 1.1
Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 13/79 (16%)
Query: 137 TTGPSAASPASENQNGN-GLSAPPGPGGGPHPPHTPSHP----------PSTRITRSQPN 185
T G + Q G G+ PPG G P P P P P+ ++ P
Sbjct: 328 TPGGRVKEGGLKGQKGEPGVPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPG 387
Query: 186 HTPAGPPGPSSNPVSNGKE 204
P GPPGP + G++
Sbjct: 388 --PQGPPGPPGRDGTPGRD 404
Score = 29.6 bits (65), Expect = 2.0
Identities = 25/92 (27%), Positives = 31/92 (33%), Gaps = 23/92 (25%)
Query: 142 AASPASENQNGN-GLSAPPGPGGGPHP------PHTPSHPPSTRIT--RSQPNHT----- 187
A PA + G G PPGP G P P P P + + +P
Sbjct: 775 ALGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFG 834
Query: 188 ---------PAGPPGPSSNPVSNGKETRRSSK 210
P GPPGP PV + SS+
Sbjct: 835 MRGMPGPPGPPGPPGPPGTPVYDSNVFAESSR 866
Score = 27.7 bits (60), Expect = 7.4
Identities = 29/93 (31%), Positives = 32/93 (34%), Gaps = 17/93 (18%)
Query: 128 DSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHTPS--HPPSTRITRS--- 182
D+ P T G + G G PPGP G P PP PS H T I
Sbjct: 418 DTGPQGFPGTPG-DVGPKGDKGDPGVGERGPPGPQGPPGPP-GPSFRHDKLTFIDMEGSG 475
Query: 183 ---------QPNHTPAGPPGPSSNPVSNGKETR 206
P P GPPGP P G+ R
Sbjct: 476 FGGDLEALRGPRGFP-GPPGPPGVPGLPGEPGR 507
Score = 27.7 bits (60), Expect = 7.4
Identities = 25/89 (28%), Positives = 29/89 (32%), Gaps = 24/89 (26%)
Query: 134 SQPTTGPSAAS--PASENQNG-NGLSAPPGPGGGPHPPHTPSHP--------PSTRITRS 182
S GP+ P E G GL PPGP G PP P + ++
Sbjct: 512 SSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKG 571
Query: 183 QPNHT-------------PAGPPGPSSNP 198
P PAGPPGP P
Sbjct: 572 APGPAGARGESGLAGAPGPAGPPGPPGPP 600
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 42.4 bits (98), Expect = 3e-04
Identities = 24/58 (41%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 145 PASENQNGNGLSAPPGPGGGPHPPHTPSHPPSTRITRSQPNHTPAGPPGPSSNPVSNG 202
P + G G GP G P PP PS P R T S P P GPPGP P + G
Sbjct: 1147 PGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPG--PPGPPGPPGPPGTMG 1202
Score = 37.0 bits (84), Expect = 0.012
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 154 GLSAPPGPGGGPHPPHTPSHPPSTRITRSQPNHTPAGPPGPSSNPVSNG 202
G+ PPGP G P PP TP + + S+P P G PG P G
Sbjct: 1017 GMPGPPGPPGPPGPPGTPVYDSNVFAESSRPG--PPGLPGNQGPPGPKG 1063
Score = 34.3 bits (77), Expect = 0.079
Identities = 21/70 (30%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 106 PNFSEPNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNG-NGLSAPPGPGGG 164
P P + P + Q S A P S +P G +GL+ PGP G
Sbjct: 714 PGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGP 773
Query: 165 PHPPHTPSHP 174
P PP P P
Sbjct: 774 PGPPGPPGPP 783
Score = 32.3 bits (72), Expect = 0.30
Identities = 21/63 (33%), Positives = 22/63 (34%), Gaps = 16/63 (25%)
Query: 152 GNGLSAPPGPGG----------------GPHPPHTPSHPPSTRITRSQPNHTPAGPPGPS 195
G+ L PPGP G G P P PP Q P GPPGP
Sbjct: 1114 GSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPP 1173
Query: 196 SNP 198
S P
Sbjct: 1174 SFP 1176
Score = 30.8 bits (68), Expect = 0.88
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 152 GNGLSAPPGPGGGPHPPHTPSHP-----PSTRITRSQPNHTPA--GPPGP 194
G G+ PGP G P PP P P +R P P GPPGP
Sbjct: 1012 GFGMRGMPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGP 1061
Score = 30.4 bits (67), Expect = 1.1
Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 13/79 (16%)
Query: 137 TTGPSAASPASENQNGN-GLSAPPGPGGGPHPPHTPSHP----------PSTRITRSQPN 185
T G + Q G G+ PPG G P P P P P+ ++ P
Sbjct: 508 TPGGRVKEGGLKGQKGEPGVPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPG 567
Query: 186 HTPAGPPGPSSNPVSNGKE 204
P GPPGP + G++
Sbjct: 568 --PQGPPGPPGRDGTPGRD 584
Score = 29.6 bits (65), Expect = 2.0
Identities = 25/92 (27%), Positives = 31/92 (33%), Gaps = 23/92 (25%)
Query: 142 AASPASENQNGN-GLSAPPGPGGGPHP------PHTPSHPPSTRIT--RSQPNHT----- 187
A PA + G G PPGP G P P P P + + +P
Sbjct: 955 ALGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFG 1014
Query: 188 ---------PAGPPGPSSNPVSNGKETRRSSK 210
P GPPGP PV + SS+
Sbjct: 1015 MRGMPGPPGPPGPPGPPGTPVYDSNVFAESSR 1046
Score = 27.7 bits (60), Expect = 7.4
Identities = 29/93 (31%), Positives = 32/93 (34%), Gaps = 17/93 (18%)
Query: 128 DSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHTPS--HPPSTRITRS--- 182
D+ P T G + G G PPGP G P PP PS H T I
Sbjct: 598 DTGPQGFPGTPG-DVGPKGDKGDPGVGERGPPGPQGPPGPP-GPSFRHDKLTFIDMEGSG 655
Query: 183 ---------QPNHTPAGPPGPSSNPVSNGKETR 206
P P GPPGP P G+ R
Sbjct: 656 FGGDLEALRGPRGFP-GPPGPPGVPGLPGEPGR 687
Score = 27.7 bits (60), Expect = 7.4
Identities = 25/89 (28%), Positives = 29/89 (32%), Gaps = 24/89 (26%)
Query: 134 SQPTTGPSAAS--PASENQNG-NGLSAPPGPGGGPHPPHTPSHP--------PSTRITRS 182
S GP+ P E G GL PPGP G PP P + ++
Sbjct: 692 SSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKG 751
Query: 183 QPNHT-------------PAGPPGPSSNP 198
P PAGPPGP P
Sbjct: 752 APGPAGARGESGLAGAPGPAGPPGPPGPP 780
>gi|50511941 EMI domain containing 1 [Homo sapiens]
Length = 443
Score = 42.0 bits (97), Expect = 4e-04
Identities = 29/99 (29%), Positives = 34/99 (34%), Gaps = 12/99 (12%)
Query: 111 PNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHT 170
P P A ++ P Q G + A G PPGP G P PP
Sbjct: 204 PGPTGPKGDAGSRGPMGMRGPPGPQGPPGSPGRAGAVGTPGERGPPGPPGPPGPPGPP-A 262
Query: 171 PSHPPSTRITR-----------SQPNHTPAGPPGPSSNP 198
P PP RI++ NH P GP GP P
Sbjct: 263 PVGPPHARISQHGDPLLSNTFTETNNHWPQGPTGPPGPP 301
Score = 36.6 bits (83), Expect = 0.016
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 139 GPSAASPASENQNGNGLSAPPGPGGGPHPPHTPSHPPSTRITRSQPNHTPAGPPGPSSNP 198
GP+ + ++ G+ PPGP G PP +P + + P GPPGP P
Sbjct: 205 GPTGPKGDAGSRGPMGMRGPPGPQG---PPGSPGRAGAVGTPGERGPPGPPGPPGPPGPP 261
Query: 199 VSNGKETRRSSK 210
G R S+
Sbjct: 262 APVGPPHARISQ 273
Score = 33.5 bits (75), Expect = 0.14
Identities = 24/80 (30%), Positives = 29/80 (36%), Gaps = 3/80 (3%)
Query: 131 PSASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHTPSHPPSTRITRSQPNHTPAG 190
P A G S N + P GP G P P P P T + S + P G
Sbjct: 267 PHARISQHGDPLLSNTFTETNNHWPQGPTGPPGPPGPMGPPGPPGPTGVPGSPGHIGPPG 326
Query: 191 PPGP---SSNPVSNGKETRR 207
P GP S +P G+ R
Sbjct: 327 PTGPKGISGHPGEKGERGLR 346
Score = 32.3 bits (72), Expect = 0.30
Identities = 27/91 (29%), Positives = 29/91 (31%), Gaps = 13/91 (14%)
Query: 121 PNKAVQNDSNPSASQPTTGPSAASPASENQNGN-GLSAPPGPGG-----------GPHPP 168
P A D P P S ++Q G GL P GP G GP P
Sbjct: 168 PTPATPEDPAPLWGPPPAQGSPGDGGLQDQVGAWGLPGPTGPKGDAGSRGPMGMRGPPGP 227
Query: 169 HTPSHPPSTRITRSQPNHT-PAGPPGPSSNP 198
P P P P GPPGP P
Sbjct: 228 QGPPGSPGRAGAVGTPGERGPPGPPGPPGPP 258
>gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 41.6 bits (96), Expect = 5e-04
Identities = 26/85 (30%), Positives = 32/85 (37%), Gaps = 17/85 (20%)
Query: 131 PSASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHTPSHPPSTRITR--------- 181
P+A P GP AS + + SA P GP PP SHP RI+
Sbjct: 392 PNAEAPPPGPGQASSVAPSSTNVESSAEGAPPPGPAPPPATSHPRVIRISHQSVEPVVMM 451
Query: 182 --------SQPNHTPAGPPGPSSNP 198
+QP P+ P GP P
Sbjct: 452 HMNIQDSGTQPGGVPSAPTGPLGPP 476
Score = 33.9 bits (76), Expect = 0.10
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 136 PTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHTPSHPPSTRITRSQPNHTPAGPPGPS 195
P P+ AS AS +A P PGG PP TP P + SQ GP GP
Sbjct: 558 PPPAPATAS-ASAGTTNTATTAGPAPGGPAQPPPTP-QPSMADLQFSQLLGNLLGPAGPG 615
Query: 196 S 196
+
Sbjct: 616 A 616
Score = 30.0 bits (66), Expect = 1.5
Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 152 GNGLSAPPGPGGGPHPP---HTPSHPPSTRITRSQPNHTPAGPPGPSSNPVSNGKETRRS 208
GNG PP P PP S PS+ S P PPGP+ P ++ R
Sbjct: 383 GNGTRPPPTPNAEAPPPGPGQASSVAPSSTNVESSAEGAP--PPGPAPPPATSHPRVIRI 440
Query: 209 S 209
S
Sbjct: 441 S 441
>gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 41.6 bits (96), Expect = 5e-04
Identities = 26/85 (30%), Positives = 32/85 (37%), Gaps = 17/85 (20%)
Query: 131 PSASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHTPSHPPSTRITR--------- 181
P+A P GP AS + + SA P GP PP SHP RI+
Sbjct: 392 PNAEAPPPGPGQASSVAPSSTNVESSAEGAPPPGPAPPPATSHPRVIRISHQSVEPVVMM 451
Query: 182 --------SQPNHTPAGPPGPSSNP 198
+QP P+ P GP P
Sbjct: 452 HMNIQDSGTQPGGVPSAPTGPLGPP 476
Score = 33.9 bits (76), Expect = 0.10
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 136 PTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHTPSHPPSTRITRSQPNHTPAGPPGPS 195
P P+ AS AS +A P PGG PP TP P + SQ GP GP
Sbjct: 558 PPPAPATAS-ASAGTTNTATTAGPAPGGPAQPPPTP-QPSMADLQFSQLLGNLLGPAGPG 615
Query: 196 S 196
+
Sbjct: 616 A 616
Score = 30.0 bits (66), Expect = 1.5
Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 152 GNGLSAPPGPGGGPHPP---HTPSHPPSTRITRSQPNHTPAGPPGPSSNPVSNGKETRRS 208
GNG PP P PP S PS+ S P PPGP+ P ++ R
Sbjct: 383 GNGTRPPPTPNAEAPPPGPGQASSVAPSSTNVESSAEGAP--PPGPAPPPATSHPRVIRI 440
Query: 209 S 209
S
Sbjct: 441 S 441
>gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 41.6 bits (96), Expect = 5e-04
Identities = 26/85 (30%), Positives = 32/85 (37%), Gaps = 17/85 (20%)
Query: 131 PSASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHTPSHPPSTRITR--------- 181
P+A P GP AS + + SA P GP PP SHP RI+
Sbjct: 392 PNAEAPPPGPGQASSVAPSSTNVESSAEGAPPPGPAPPPATSHPRVIRISHQSVEPVVMM 451
Query: 182 --------SQPNHTPAGPPGPSSNP 198
+QP P+ P GP P
Sbjct: 452 HMNIQDSGTQPGGVPSAPTGPLGPP 476
Score = 33.9 bits (76), Expect = 0.10
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 136 PTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHTPSHPPSTRITRSQPNHTPAGPPGPS 195
P P+ AS AS +A P PGG PP TP P + SQ GP GP
Sbjct: 558 PPPAPATAS-ASAGTTNTATTAGPAPGGPAQPPPTP-QPSMADLQFSQLLGNLLGPAGPG 615
Query: 196 S 196
+
Sbjct: 616 A 616
Score = 30.0 bits (66), Expect = 1.5
Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 152 GNGLSAPPGPGGGPHPP---HTPSHPPSTRITRSQPNHTPAGPPGPSSNPVSNGKETRRS 208
GNG PP P PP S PS+ S P PPGP+ P ++ R
Sbjct: 383 GNGTRPPPTPNAEAPPPGPGQASSVAPSSTNVESSAEGAP--PPGPAPPPATSHPRVIRI 440
Query: 209 S 209
S
Sbjct: 441 S 441
>gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens]
Length = 1132
Score = 41.6 bits (96), Expect = 5e-04
Identities = 26/85 (30%), Positives = 32/85 (37%), Gaps = 17/85 (20%)
Query: 131 PSASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHTPSHPPSTRITR--------- 181
P+A P GP AS + + SA P GP PP SHP RI+
Sbjct: 398 PNAEAPPPGPGQASSVAPSSTNVESSAEGAPPPGPAPPPATSHPRVIRISHQSVEPVVMM 457
Query: 182 --------SQPNHTPAGPPGPSSNP 198
+QP P+ P GP P
Sbjct: 458 HMNIQDSGTQPGGVPSAPTGPLGPP 482
Score = 33.9 bits (76), Expect = 0.10
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 136 PTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHTPSHPPSTRITRSQPNHTPAGPPGPS 195
P P+ AS AS +A P PGG PP TP P + SQ GP GP
Sbjct: 564 PPPAPATAS-ASAGTTNTATTAGPAPGGPAQPPPTP-QPSMADLQFSQLLGNLLGPAGPG 621
Query: 196 S 196
+
Sbjct: 622 A 622
Score = 30.0 bits (66), Expect = 1.5
Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 152 GNGLSAPPGPGGGPHPP---HTPSHPPSTRITRSQPNHTPAGPPGPSSNPVSNGKETRRS 208
GNG PP P PP S PS+ S P PPGP+ P ++ R
Sbjct: 389 GNGTRPPPTPNAEAPPPGPGQASSVAPSSTNVESSAEGAP--PPGPAPPPATSHPRVIRI 446
Query: 209 S 209
S
Sbjct: 447 S 447
>gi|54112101 ectodysplasin A isoform EDA-A2 [Homo sapiens]
Length = 389
Score = 41.2 bits (95), Expect = 6e-04
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 11/99 (11%)
Query: 107 NFSEPNPE-YSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGP 165
NF P+ + YS +++ + V+ + +++ GP +N+ + PPGP G P
Sbjct: 137 NFFFPDEKPYSEEES--RRVRRNKRSKSNEGADGPV------KNKKKGKKAGPPGPNGPP 188
Query: 166 HPPHTPSH--PPSTRITRSQPNHTPAGPPGPSSNPVSNG 202
PP P PP P T GPPGP P G
Sbjct: 189 GPPGPPGPQGPPGIPGIPGIPGTTVMGPPGPPGPPGPQG 227
>gi|4503449 ectodysplasin A isoform EDA-A1 [Homo sapiens]
Length = 391
Score = 41.2 bits (95), Expect = 6e-04
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 11/99 (11%)
Query: 107 NFSEPNPE-YSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGP 165
NF P+ + YS +++ + V+ + +++ GP +N+ + PPGP G P
Sbjct: 137 NFFFPDEKPYSEEES--RRVRRNKRSKSNEGADGPV------KNKKKGKKAGPPGPNGPP 188
Query: 166 HPPHTPSH--PPSTRITRSQPNHTPAGPPGPSSNPVSNG 202
PP P PP P T GPPGP P G
Sbjct: 189 GPPGPPGPQGPPGIPGIPGIPGTTVMGPPGPPGPPGPQG 227
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 41.2 bits (95), Expect = 6e-04
Identities = 30/101 (29%), Positives = 37/101 (36%), Gaps = 4/101 (3%)
Query: 109 SEPNPEYSTQQAPNKAVQNDSNPSASQPTTGPSA---ASPASENQNGNGLSAPPGPGGGP 165
S P S P + S P A P P+A ASP+ + Q G + GP
Sbjct: 513 SAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGP 572
Query: 166 HPPHTPSHPPSTRITRSQPNHTPAGPPGPSSNPVSNGKETR 206
PP PP + R P P GP GP+ G R
Sbjct: 573 APPKASGAPPGGQ-QRQGPPQKPPGPAGPTRQASQAGPVPR 612
Score = 30.8 bits (68), Expect = 0.88
Identities = 27/96 (28%), Positives = 37/96 (38%), Gaps = 21/96 (21%)
Query: 136 PTTGP----SAASPASENQNGNGLSAPPGPGGGP--HPPHTPS-----HPP----STRIT 180
PT+ P S A+P ++ Q GPG P PP +PS PP T ++
Sbjct: 511 PTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVS 570
Query: 181 RSQPNHTPAGPP------GPSSNPVSNGKETRRSSK 210
P PP GP P TR++S+
Sbjct: 571 GPAPPKASGAPPGGQQRQGPPQKPPGPAGPTRQASQ 606
Score = 27.7 bits (60), Expect = 7.4
Identities = 27/97 (27%), Positives = 36/97 (37%), Gaps = 6/97 (6%)
Query: 118 QQAPNKAVQNDSN--PSASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHT---PS 172
Q+ P + Q+ S P A P SP S Q +APP G G P
Sbjct: 483 QRPPPQGQQHLSGLGPPAGSPLP-QRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPG 541
Query: 173 HPPSTRITRSQPNHTPAGPPGPSSNPVSNGKETRRSS 209
PP+ R S AGPP + +G ++S
Sbjct: 542 APPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKAS 578
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 41.2 bits (95), Expect = 6e-04
Identities = 30/101 (29%), Positives = 37/101 (36%), Gaps = 4/101 (3%)
Query: 109 SEPNPEYSTQQAPNKAVQNDSNPSASQPTTGPSA---ASPASENQNGNGLSAPPGPGGGP 165
S P S P + S P A P P+A ASP+ + Q G + GP
Sbjct: 513 SAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGP 572
Query: 166 HPPHTPSHPPSTRITRSQPNHTPAGPPGPSSNPVSNGKETR 206
PP PP + R P P GP GP+ G R
Sbjct: 573 APPKASGAPPGGQ-QRQGPPQKPPGPAGPTRQASQAGPVPR 612
Score = 30.8 bits (68), Expect = 0.88
Identities = 27/96 (28%), Positives = 37/96 (38%), Gaps = 21/96 (21%)
Query: 136 PTTGP----SAASPASENQNGNGLSAPPGPGGGP--HPPHTPS-----HPP----STRIT 180
PT+ P S A+P ++ Q GPG P PP +PS PP T ++
Sbjct: 511 PTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVS 570
Query: 181 RSQPNHTPAGPP------GPSSNPVSNGKETRRSSK 210
P PP GP P TR++S+
Sbjct: 571 GPAPPKASGAPPGGQQRQGPPQKPPGPAGPTRQASQ 606
Score = 27.7 bits (60), Expect = 7.4
Identities = 27/97 (27%), Positives = 36/97 (37%), Gaps = 6/97 (6%)
Query: 118 QQAPNKAVQNDSN--PSASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHT---PS 172
Q+ P + Q+ S P A P SP S Q +APP G G P
Sbjct: 483 QRPPPQGQQHLSGLGPPAGSPLP-QRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPG 541
Query: 173 HPPSTRITRSQPNHTPAGPPGPSSNPVSNGKETRRSS 209
PP+ R S AGPP + +G ++S
Sbjct: 542 APPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKAS 578
>gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]
Length = 1970
Score = 40.8 bits (94), Expect = 8e-04
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 106 PNFSEPNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGP 165
P++S +P YS +PN + S S + P+ P++ + + N + S P
Sbjct: 1739 PSYSPTSPNYSPT-SPNYTPTSPSY-SPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPS 1796
Query: 166 HPPHTPSHPPST-RITRSQPNHTPAGPPGPSSNP 198
+ P +PS+ PS+ R T P +TP+ P S+P
Sbjct: 1797 YSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSP 1830
Score = 39.3 bits (90), Expect = 0.002
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 11/102 (10%)
Query: 106 PNFSEPNPEYSTQQAPNKAVQNDSNPSAS--QPTTGPSAASPASENQNGNGLSAPPGPGG 163
P++S +P YS P + ++PS S P+ P++ S + + N + S P
Sbjct: 1704 PSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTS 1759
Query: 164 GPHPPHTPSH-PPSTRITRSQPNHTPA----GPPGPSSNPVS 200
+ P +PS+ P S T + PN++P P PS +P S
Sbjct: 1760 PSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTS 1801
Score = 39.3 bits (90), Expect = 0.002
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 106 PNFSEPNPEY---STQQAPNKAVQNDSNP--SASQPTTGPSAASPASENQNGNGLSAPPG 160
P++S +PEY S + +P + ++P S + PT P+ + + + S
Sbjct: 1844 PSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYT 1903
Query: 161 PGGGPHPPHTPSHPP-STRITRSQPNHTPAGPPGPSSNPVSNG 202
P + P +P++ P S + + + P ++P P G + +P S G
Sbjct: 1904 PTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPG 1946
Score = 36.6 bits (83), Expect = 0.016
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 11/102 (10%)
Query: 106 PNFSEPNPEYSTQQAPNKAVQNDSNPSAS--QPTTGPSAASPASENQNGNGLSAPPGPGG 163
PN+S +P YS P + ++PS S P+ P++ S + + + + S P
Sbjct: 1634 PNYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1689
Query: 164 GPHPPHTPSH-PPSTRITRSQPNHTPA----GPPGPSSNPVS 200
+ P +PS+ P S + + P+++P P PS +P S
Sbjct: 1690 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1731
Score = 36.6 bits (83), Expect = 0.016
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Query: 106 PNFSEPNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGP 165
PN+S +P YS +PS+ + T +P+S + + + S P
Sbjct: 1781 PNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPS--SPSYSPTSPK 1838
Query: 166 HPPHTPSHPPST-RITRSQPNHTPAGPPGPSSNP 198
+ P +PS+ PS+ T + P ++P P ++P
Sbjct: 1839 YTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSP 1872
Score = 32.3 bits (72), Expect = 0.30
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 13/87 (14%)
Query: 120 APNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAP--PGPGGGPHPPHTPSHPPST 177
+P+ A P P+ SP S G S+P P PGG P ++P+ P
Sbjct: 1547 SPSAASDASGFSPGYSPAWSPTPGSPGSP-----GPSSPYIPSPGGAMSPSYSPTSPAYE 1601
Query: 178 RITRSQPNHTPA----GPPGPSSNPVS 200
RS +TP P PS +P S
Sbjct: 1602 --PRSPGGYTPQSPSYSPTSPSYSPTS 1626
Score = 30.0 bits (66), Expect = 1.5
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 13/79 (16%)
Query: 106 PNFSEPNPEYSTQQ---APNKAVQNDSNP--SASQPTTGPSAA--SPASENQNGNGLSAP 158
P +S P+YS +P V ++P S + PT P++ SP S + P
Sbjct: 1879 PTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYS------P 1932
Query: 159 PGPGGGPHPPHTPSHPPST 177
P G + P +P + P++
Sbjct: 1933 TSPKGSTYSPTSPGYSPTS 1951
>gi|111118994 brain-specific angiogenesis inhibitor 1 precursor [Homo
sapiens]
Length = 1584
Score = 40.8 bits (94), Expect = 8e-04
Identities = 27/83 (32%), Positives = 34/83 (40%), Gaps = 14/83 (16%)
Query: 120 APNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHTPSHPPSTRI 179
AP ++ S PS P+ GP A PA PP P P PP PP +
Sbjct: 1383 APEASLPARSPPSRQPPSGGPPEAPPAQ----------PPPPPPPPPPPPQQPLPPPPNL 1432
Query: 180 TRSQPN----HTPAGPPGPSSNP 198
+ P+ PA PGPS+ P
Sbjct: 1433 EPAPPSLGDPGEPAAHPGPSTGP 1455
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 40.4 bits (93), Expect = 0.001
Identities = 31/106 (29%), Positives = 39/106 (36%), Gaps = 3/106 (2%)
Query: 106 PNFSEPNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGG-G 164
P S P+P T +P S P P + P P S + LS PP
Sbjct: 523 PEESPPSPALETPLSPPPEASPLSPPFEESPLSPPPEELPTSPPPEASRLSPPPEESPMS 582
Query: 165 PHPPHTPSHPPSTRITRSQP-NHTPAGPPGPSSNPVSNGKETRRSS 209
P P +P PP P +P PP P +P+S E R S
Sbjct: 583 PPPEESPMSPPPEASRLFPPFEESPLSPP-PEESPLSPPPEASRLS 627
Score = 34.7 bits (78), Expect = 0.061
Identities = 32/110 (29%), Positives = 42/110 (38%), Gaps = 13/110 (11%)
Query: 111 PNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGG-GPHPPH 169
P PE S P +A + P P + P SP S + LS PP P P
Sbjct: 583 PPPEESPMSPPPEASRLFP-PFEESPLSPPPEESPLSPPPEASRLSPPPEDSPMSPPPEE 641
Query: 170 TPSHPPS--TRIT--------RSQPNHTPAGPPGPSSNPVSNGKETRRSS 209
+P PP +R++ P +P PP P +P S E R S
Sbjct: 642 SPMSPPPEVSRLSPLPVVSRLSPPPEESPLSPP-PEESPTSPPPEASRLS 690
Score = 33.1 bits (74), Expect = 0.18
Identities = 32/109 (29%), Positives = 39/109 (35%), Gaps = 6/109 (5%)
Query: 106 PNFSE----PNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGP 161
P F E P PE S P +A + S P P + P SP S + LS P
Sbjct: 601 PPFEESPLSPPPEESPLSPPPEASRL-SPPPEDSPMSPPPEESPMSPPPEVSRLSPLPVV 659
Query: 162 GG-GPHPPHTPSHPPSTRITRSQPNHTPAGPPGPSSNPVSNGKETRRSS 209
P P +P PP S P P P +P S E +S
Sbjct: 660 SRLSPPPEESPLSPPPEESPTSPPPEASRLSPPPEDSPTSPPPEDSPAS 708
Score = 33.1 bits (74), Expect = 0.18
Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
Query: 111 PNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPG-GGPHPPH 169
P PE S + +P V S P P + P SP S + LS PP P P
Sbjct: 646 PPPEVS-RLSPLPVVSRLSPPPEESPLSPPPEESPTSPPPEASRLSPPPEDSPTSPPPED 704
Query: 170 TPSHPPSTRITRSQP 184
+P+ PP S P
Sbjct: 705 SPASPPPEDSLMSLP 719
Score = 32.0 bits (71), Expect = 0.39
Identities = 28/83 (33%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 133 ASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHTPSHP----PSTRITRSQPNHTP 188
A +P T S S N + LSAPP P PP +P P P T P
Sbjct: 4885 APEPPTQHSYTYNVS-NLDVRQLSAPPPEE--PSPPPSPLAPSPASPPTEPLVELPTEPL 4941
Query: 189 AGPPGPSSNPVSNGKETRRSSKR 211
A PP PS P+++ E+ R R
Sbjct: 4942 AEPPVPSPLPLASSPESARPKPR 4964
Score = 30.0 bits (66), Expect = 1.5
Identities = 26/107 (24%), Positives = 34/107 (31%), Gaps = 20/107 (18%)
Query: 109 SEPNPEYSTQQAPNKAVQNDSN-PSASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHP 167
S P PE Q + + P +P GP A PA + + + GPGG P P
Sbjct: 2839 STPGPELGRQALGSPLAGISTRLPGPGEPVPGP--AGPAQFIELRHNVQKGLGPGGTPFP 2896
Query: 168 PHTPSHPPSTRITRSQPN-----------------HTPAGPPGPSSN 197
P P P+ P+ PP P N
Sbjct: 2897 GQGPPQRPRFYPVSEDPHRLAPEGLRGLAVSGLPPQKPSAPPAPELN 2943
Score = 29.3 bits (64), Expect = 2.6
Identities = 28/105 (26%), Positives = 38/105 (36%), Gaps = 15/105 (14%)
Query: 111 PNPEYSTQQAPNKAVQNDSNPSASQPTTGPSA--ASPASENQN------GNGLSAPPGPG 162
P PE S P + P AS+ + P ASP E + + LS PP
Sbjct: 442 PPPEESPLSPPPEESPTSPPPEASRLSPPPEELPASPLPEALHLSRPLEESPLSPPPEES 501
Query: 163 GGPHPPHTPSHPPSTRITRSQPNHTPAGP-------PGPSSNPVS 200
PP + P S P +P P P P ++P+S
Sbjct: 502 PLSPPPESSPFSPLEESPLSPPEESPPSPALETPLSPPPEASPLS 546
Score = 28.9 bits (63), Expect = 3.3
Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 11/50 (22%)
Query: 158 PPGPGGGPHPPH----------TPSHPPSTRITRSQPNHTPAGPP-GPSS 196
PP P G PPH T P ST T + N P+G P GPSS
Sbjct: 2549 PPVPQPGLPPPHGINSHFGPGPTLGKPQSTNYTVATGNFHPSGSPLGPSS 2598
Score = 28.1 bits (61), Expect = 5.7
Identities = 26/96 (27%), Positives = 32/96 (33%), Gaps = 5/96 (5%)
Query: 104 EVPNFSEPNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQ---NGNGLSAPPG 160
E+P P S Q P + +P + P A SP E + G S P
Sbjct: 914 ELPLSPSGEPSLSPQLMPPDPLPPPLSPIIT--AAAPPALSPLGELEYPFGAKGDSDPES 971
Query: 161 PGGGPHPPHTPSHPPSTRITRSQPNHTPAGPPGPSS 196
P P S PP T +P PP P S
Sbjct: 972 PLAAPILETPISPPPEANCTDPEPVPPMILPPSPGS 1007
Score = 28.1 bits (61), Expect = 5.7
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Query: 113 PEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHTPS 172
P+Y +Q + N P +S P T P P+ + + NG++ P G HP S
Sbjct: 4604 PDYYSQLLTKNNLSNPPTPPSSLPPTPP----PSVQQKMVNGVT--PSEELGEHPKDAAS 4657
Query: 173 HPPSTRITR 181
S R R
Sbjct: 4658 ARDSERALR 4666
Score = 27.7 bits (60), Expect = 7.4
Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 10/76 (13%)
Query: 131 PSASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHTPSHPPSTRITRSQP-NHTPA 189
P P + P SP S + LS PP P+ P + S+P +P
Sbjct: 443 PPEESPLSPPPEESPTSPPPEASRLSPPP--------EELPASPLPEALHLSRPLEESPL 494
Query: 190 GPPGPSSNPVSNGKET 205
PP P +P+S E+
Sbjct: 495 SPP-PEESPLSPPPES 509
Score = 27.7 bits (60), Expect = 7.4
Identities = 18/48 (37%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 136 PTTGPSAASPASENQNGNGLSAPPGPGGGPH------PPHTPSHPPST 177
P T P SP L A PG G PP TP H PST
Sbjct: 2193 PPTYPPYPSPTGAPAQPPMLGASSRPGAGQPGEFHTTPPGTPRHQPST 2240
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 40.4 bits (93), Expect = 0.001
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 133 ASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHTPSHPPSTRITRSQP------NH 186
A P + P+SE L+ PPG G P P+ PP+ ++ +P
Sbjct: 369 AKPPAQQTGSEKPSSEQPGPKALAQPPGVGKTPAQQPGPAKPPTQQVGTPKPLAQQPGLQ 428
Query: 187 TPAGPPGPSSNPV 199
+PA PGP+ PV
Sbjct: 429 SPAKAPGPTKTPV 441
Score = 34.7 bits (78), Expect = 0.061
Identities = 24/95 (25%), Positives = 34/95 (35%), Gaps = 5/95 (5%)
Query: 106 PNFSEPNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSA--PPGPGG 163
P +P P Q P S P ++P PS + Q G PPG
Sbjct: 304 PPIQQPTPGKPPAQQPG---HEKSQPGPAKPPAQPSGLTKPLAQQPGTVKPPVQPPGTTK 360
Query: 164 GPHPPHTPSHPPSTRITRSQPNHTPAGPPGPSSNP 198
P P P+ PP+ + +P+ GP + P
Sbjct: 361 PPAQPLGPAKPPAQQTGSEKPSSEQPGPKALAQPP 395
Score = 33.5 bits (75), Expect = 0.14
Identities = 29/103 (28%), Positives = 39/103 (37%), Gaps = 10/103 (9%)
Query: 110 EPNPEYSTQQAPNKAVQNDSNPS-ASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPP 168
+ P Q P A P A P P +A P S+ G + PP GP P
Sbjct: 463 QTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQPGSAKPPSQQP---GSTKPPPQQPGPAKP 519
Query: 169 HTPSHPPSTRITRSQPNHTPAGPPGPSSNPVSNGKETRRSSKR 211
+P P ST+ QP G PS+ S K + + S +
Sbjct: 520 -SPQQPGSTKPPSQQP-----GSAKPSAQQPSPAKPSAQQSTK 556
Score = 33.1 bits (74), Expect = 0.18
Identities = 28/96 (29%), Positives = 35/96 (36%), Gaps = 15/96 (15%)
Query: 124 AVQNDSNPSASQPTTG-PSAASPASENQNGNGLSAPPGPGGGPHP----PHT---PSHPP 175
++ + S P QPT G P A P E P P G P P T P PP
Sbjct: 297 SLPSPSKPPIQQPTPGKPPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQQPGTVKPPVQPP 356
Query: 176 STRITRSQPNHTPAGPPGPSSNPVSNGKETRRSSKR 211
T PA P GP+ P + SS++
Sbjct: 357 GT-------TKPPAQPLGPAKPPAQQTGSEKPSSEQ 385
Score = 32.3 bits (72), Expect = 0.30
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Query: 103 SEVPNFSEPNPEYSTQQAPNKAVQNDSNPSASQP-TTGPSAASPASENQNGNGLSAPPGP 161
S+ P ++P P+ P+ + P + QP + PSA P+ + + P
Sbjct: 501 SQQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPSAQQSTKPVSQ 560
Query: 162 GGGPHPPHTPSHPPSTRITRSQ 183
G P P+ PS + SQ
Sbjct: 561 TGSGKPLQPPTVSPSAKQPPSQ 582
Score = 31.2 bits (69), Expect = 0.67
Identities = 28/107 (26%), Positives = 37/107 (34%), Gaps = 12/107 (11%)
Query: 106 PNFSEPNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPG----- 160
P +P P Q P A P +++P P PA + G + PP
Sbjct: 479 PPPQQPGPAKPPPQQPGSAKPPSQQPGSTKPP--PQQPGPAKPSPQQPGSTKPPSQQPGS 536
Query: 161 --PGGGPHPPHTPSHPPSTRITRSQPNHTPAGPP--GPSS-NPVSNG 202
P P PS ST+ + P PP PS+ P S G
Sbjct: 537 AKPSAQQPSPAKPSAQQSTKPVSQTGSGKPLQPPTVSPSAKQPPSQG 583
Score = 29.6 bits (65), Expect = 2.0
Identities = 25/104 (24%), Positives = 37/104 (35%), Gaps = 9/104 (8%)
Query: 103 SEVPNFSEPNPEYSTQQAPNKAVQNDSNPS-ASQPTTGPSAASPASENQNGNGLSAPPGP 161
SE P+ +P P+ + Q P P A PT P ++ + PGP
Sbjct: 378 SEKPSSEQPGPK-ALAQPPGVGKTPAQQPGPAKPPTQQVGTPKPLAQQPGLQSPAKAPGP 436
Query: 162 GGGP-------HPPHTPSHPPSTRITRSQPNHTPAGPPGPSSNP 198
P P + P T ++ P P+ PGP+ P
Sbjct: 437 TKTPVQQPGPGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPP 480
Score = 28.9 bits (63), Expect = 3.3
Identities = 30/89 (33%), Positives = 36/89 (40%), Gaps = 21/89 (23%)
Query: 134 SQPTT------------GPSAASPASENQNGNGLSAP---PGPGGGPHPPHTPSHPPSTR 178
SQPTT G S S AS + G P GPG PS PP+
Sbjct: 918 SQPTTPQETVTGKLFGFGASIFSQASNLISTAGQPGPHSQSGPGAPMKQAPAPSQPPT-- 975
Query: 179 ITRSQPNHTPAGPPGPS-SNPVSNGKETR 206
++ P T PP P+ S PV KET+
Sbjct: 976 -SQGPPKSTGQAPPAPAKSIPVK--KETK 1001
Score = 28.1 bits (61), Expect = 5.7
Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 20/86 (23%)
Query: 131 PSASQPTTGPSAAS-PASEN----QNGNGLSAPPGPGGGPHPPHTPSHPPSTRITRSQPN 185
P++ P+ PS +S PA + +SA P P P PP P PP
Sbjct: 2372 PASQLPSGSPSVSSLPAKPRPFFRSSSLDISAQPPPPPPPPPPPPPPPPP---------- 2421
Query: 186 HTPAGPPGPSSNPVSNGKETRRSSKR 211
PP P P ++ K T K+
Sbjct: 2422 -----PPPPPLPPPTSPKPTILPKKK 2442
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.130 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,605,292
Number of Sequences: 37866
Number of extensions: 783926
Number of successful extensions: 12861
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 1023
Number of HSP's that attempted gapping in prelim test: 5978
Number of HSP's gapped (non-prelim): 5897
length of query: 211
length of database: 18,247,518
effective HSP length: 98
effective length of query: 113
effective length of database: 14,536,650
effective search space: 1642641450
effective search space used: 1642641450
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.