Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: YIPF2 Sequence: fasta or formatted (316aa) NCBI GI: 13128976
Description:

Yip1 domain family, member 2

Referenced in:

ER, Golgi, and the Secretory Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         28           2
 C cysteine            1.3          4           1
 D aspartate           3.8         12           1
 E glutamate           4.4         14           3
 F phenylalanine       5.7         18           2
 G glycine             6.0         19           2
 H histidine           2.5          8           2
 I isoleucine          3.2         10           1
 K lysine              1.6          5           1
 L leucine            13.9         44           2
 M methionine          1.3          4           1
 N asparagine          1.9          6           1
 P proline             7.6         24           3
 Q glutamine           5.7         18           6
 R arginine            4.1         13           2
 S serine              7.0         22           1
 T threonine           6.0         19           2
 V valine              8.9         28           3
 W tryptophan          2.8          9           1
 Y tyrosine            3.5         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Yip1 domain family, member 2 
YIPF1                 0.433   Yip1 domain family, member 1 
OR2B11                0.024   olfactory receptor, family 2, subfamily B, member 11...
YIPF4                 0.018   Yip1 domain family, member 4 
YIPF3                 0.018   natural killer cell-specific antigen KLIP1 
OR1L8                 0.018   olfactory receptor, family 1, subfamily L, member 8 ...
OR2B6                 0.016   olfactory receptor, family 2, subfamily B, member 6 ...
OR8I2                 0.016   olfactory receptor, family 8, subfamily I, member 2 ...
OR5B17                0.016   olfactory receptor, family 5, subfamily B, member 17...
OR5H6                 0.016   olfactory receptor, family 5, subfamily H, member 6 ...
LOC100292226          0.016   PREDICTED: hypothetical protein 
LOC100290457          0.016   PREDICTED: hypothetical protein XP_002346973 
LOC100287664          0.016   PREDICTED: hypothetical protein XP_002342823 
LOC100287664          0.016   PREDICTED: similar to zinc finger domain-related pr...
OR13G1                0.016   olfactory receptor, family 13, subfamily G, member 1...
OR2W3                 0.014   olfactory receptor, family 2, subfamily W, member 3 ...
OR1L4                 0.014   olfactory receptor, family 1, subfamily L, member 4 ...
OR1L3                 0.013   olfactory receptor, family 1, subfamily L, member 3 ...
OR1L6                 0.013   olfactory receptor, family 1, subfamily L, member 6 ...
OR1L1                 0.013   olfactory receptor, family 1, subfamily L, member 1...
OR5B2                 0.013   olfactory receptor, family 5, subfamily B, member 2 ...
OR13A1                0.013   olfactory receptor, family 13, subfamily A, member ...
HNRNPUL2              0.011   heterogeneous nuclear ribonucleoprotein U-like 2 [H...
OR13C5                0.011   olfactory receptor, family 13, subfamily C, member 5...
OR13C2                0.011   olfactory receptor, family 13, subfamily C, member 2...
OR8K5                 0.011   olfactory receptor, family 8, subfamily K, member 5...
OR2C1                 0.011   olfactory receptor, family 2, subfamily C, member 1...
OR2S2                 0.011   olfactory receptor, family 2, subfamily S, member 2...
OR5R1                 0.011   olfactory receptor, family 5, subfamily R, member 1 ...
OR8U1                 0.010   olfactory receptor, family 8, subfamily U, member 1 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press