Guide to the Human Genome
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Name: OR13A1 Sequence: fasta or formatted (328aa) NCBI GI: 153791572
Description:

olfactory receptor, family 13, subfamily A, member 1

Referenced in:

Olfactory Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         27           2
 C cysteine            3.4         11           1
 D aspartate           1.2          4           1
 E glutamate           3.0         10           2
 F phenylalanine       6.7         22           2
 G glycine             4.9         16           2
 H histidine           2.4          8           1
 I isoleucine          5.8         19           2
 K lysine              3.4         11           1
 L leucine            14.0         46           4
 M methionine          4.6         15           2
 N asparagine          3.4         11           1
 P proline             4.6         15           2
 Q glutamine           1.2          4           1
 R arginine            2.7          9           1
 S serine             10.1         33           2
 T threonine           6.7         22           1
 V valine              7.0         23           2
 W tryptophan          1.2          4           1
 Y tyrosine            5.5         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   olfactory receptor, family 13, subfamily A, member ... 
OR13G1                0.493   olfactory receptor, family 13, subfamily G, member 1...
OR5V1                 0.422   olfactory receptor, family 5, subfamily V, member 1 ...
OR1F1                 0.402   olfactory receptor, family 1, subfamily F, member 1 [...
OR2G6                 0.394   olfactory receptor, family 2, subfamily G, member 6 ...
OR1N1                 0.394   olfactory receptor, family 1, subfamily N, member 1 ...
OR5A2                 0.391   olfactory receptor, family 5, subfamily A, member 2 ...
OR2G3                 0.391   olfactory receptor, family 2, subfamily G, member 3 ...
OR5AN1                0.387   olfactory receptor, family 5, subfamily AN, member 1...
OR1N2                 0.387   olfactory receptor, family 1, subfamily N, member 2 ...
OR5AR1                0.383   olfactory receptor, family 5, subfamily AR, member 1...
OR1G1                 0.383   olfactory receptor, family 1, subfamily G, member 1 ...
OR5AS1                0.383   olfactory receptor, family 5, subfamily AS, member 1...
OR8B3                 0.383   olfactory receptor, family 8, subfamily B, member 3 ...
OR8A1                 0.383   olfactory receptor, family 8, subfamily A, member 1 ...
OR5B12                0.381   olfactory receptor, family 5, subfamily B, member 12...
OR9G4                 0.380   olfactory receptor, family 9, subfamily G, member 4 ...
OR1M1                 0.378   olfactory receptor, family 1, subfamily M, member 1 ...
OR5AP2                0.376   olfactory receptor, family 5, subfamily AP, member 2...
OR5I1                 0.375   olfactory receptor, family 5, subfamily I, member 1 [...
OR5B21                0.375   olfactory receptor, family 5, subfamily B, member 21...
OR8B2                 0.375   olfactory receptor, family 8, subfamily B, member 2 ...
OR5A1                 0.375   olfactory receptor, family 5, subfamily A, member 1 ...
OR8D4                 0.373   olfactory receptor, family 8, subfamily D, member 4 ...
OR10A3                0.372   olfactory receptor, family 10, subfamily A, member 3...
OR2C3                 0.370   olfactory receptor, family 2, subfamily C, member 3...
OR2J3                 0.369   olfactory receptor, family 2, subfamily J, member 3...
OR1L8                 0.369   olfactory receptor, family 1, subfamily L, member 8 ...
OR7D2                 0.369   olfactory receptor, family 7, subfamily D, member 2 ...
OR2B11                0.369   olfactory receptor, family 2, subfamily B, member 11...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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