Guide to the Human Genome
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Name: YIPF4 Sequence: fasta or formatted (244aa) NCBI GI: 14150076
Description:

Yip1 domain family, member 4

Referenced in:

ER, Golgi, and the Secretory Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         14           2
 C cysteine            0.4          1           1
 D aspartate           5.7         14           3
 E glutamate           4.5         11           2
 F phenylalanine       7.0         17           2
 G glycine             8.2         20           2
 H histidine           0.0          0           0
 I isoleucine          7.4         18           2
 K lysine              3.7          9           2
 L leucine            14.3         35           2
 M methionine          1.6          4           1
 N asparagine          2.0          5           1
 P proline             7.0         17           3
 Q glutamine           2.0          5           1
 R arginine            2.9          7           1
 S serine              7.0         17           2
 T threonine           4.1         10           2
 V valine              9.4         23           2
 W tryptophan          2.0          5           1
 Y tyrosine            4.9         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Yip1 domain family, member 4 
YIPF6                 0.090   Yip1 domain family, member 6 
YIPF5                 0.084   Yip1 domain family, member 5 
YIPF5                 0.084   Yip1 domain family, member 5 
YIPF7                 0.077   Yip1 domain family, member 7 
YIPF1                 0.030   Yip1 domain family, member 1 
YIPF2                 0.024   Yip1 domain family, member 2 
SLC15A2               0.015   peptide transporter 2 isoform a 
YIPF3                 0.015   natural killer cell-specific antigen KLIP1 
MYLK3                 0.011   myosin light chain kinase 3 
ROR2                  0.009   receptor tyrosine kinase-like orphan receptor 2 prec...
TMEM115               0.006   PL6 protein 
GDPD4                 0.006   glycerophosphodiester phosphodiesterase domain conta...
FAM189B               0.006   hypothetical protein LOC10712 isoform b 
FAM189B               0.006   hypothetical protein LOC10712 isoform a 
ABCA9                 0.006   ATP-binding cassette, sub-family A, member 9 
OR2L8                 0.006   olfactory receptor, family 2, subfamily L, member 8 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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