Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100287664 Sequence: fasta or formatted (108aa) NCBI GI: 239509011
Description:

PREDICTED: similar to zinc finger domain-related protein TSRM

Not currently referenced in the text

Other entries for this name:
alt mRNA {108aa} PREDICTED: hypothetical protein XP_002342823
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.8          3           2
 C cysteine            4.6          5           2
 D aspartate           0.9          1           1
 E glutamate           4.6          5           1
 F phenylalanine       6.5          7           2
 G glycine             4.6          5           1
 H histidine           3.7          4           1
 I isoleucine          4.6          5           1
 K lysine              3.7          4           1
 L leucine            15.7         17           2
 M methionine          4.6          5           1
 N asparagine          2.8          3           1
 P proline             6.5          7           1
 Q glutamine           4.6          5           1
 R arginine            4.6          5           1
 S serine              4.6          5           1
 T threonine           6.5          7           2
 V valine              7.4          8           1
 W tryptophan          1.9          2           1
 Y tyrosine            4.6          5           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to zinc finger domain-related pr... 
LOC100292226          1.000   PREDICTED: hypothetical protein 
LOC100290457          1.000   PREDICTED: hypothetical protein XP_002346973 
LOC100287664          1.000   PREDICTED: hypothetical protein XP_002342823 
YIPF2                 0.049   Yip1 domain family, member 2 
OR5T1                 0.024   olfactory receptor, family 5, subfamily T, member 1 ...
PSEN2                 0.015   presenilin 2 isoform 2 
PSEN2                 0.015   presenilin 2 isoform 1 
SLC5A2                0.010   solute carrier family 5 (sodium/glucose cotransporter...
OPRM1                 0.010   opioid receptor, mu 1 isoform MOR-1G1 
OPRM1                 0.010   opioid receptor, mu 1 isoform MOR-1H 
OPRM1                 0.010   opioid receptor, mu 1 isoform MOR-1 
OPRM1                 0.010   opioid receptor, mu 1 isoform MOR-1B5 
OPRM1                 0.010   opioid receptor, mu 1 isoform MOR-1B2 
OPRM1                 0.010   opioid receptor, mu 1 isoform MOR1-K1 
OPRM1                 0.010   opioid receptor, mu 1 isoform MOR-1B3 
OPRM1                 0.010   opioid receptor, mu 1 isoform MOR-1G2 
OPRM1                 0.010   opioid receptor, mu 1 isoform MOR-1B1 
GNRHR                 0.010   gonadotropin-releasing hormone receptor isoform 1 [Ho...
OPRD1                 0.010   opioid receptor, delta 1 
OPRM1                 0.010   opioid receptor, mu 1 isoform MOR-1A 
OPRM1                 0.010   opioid receptor, mu 1 isoform MOR-1B4 
OPRM1                 0.010   opioid receptor, mu 1 isoform MOR-1O 
OPRM1                 0.010   opioid receptor, mu 1 isoform MOR-1X 
FAR2                  0.010   fatty acyl CoA reductase 2 
OR2T3                 0.010   olfactory receptor, family 2, subfamily T, member 3 ...
LOC100133741          0.010   PREDICTED: hypothetical protein 
OR2T34                0.010   olfactory receptor, family 2, subfamily T, member 34...
LMBRD1                0.005   liver regeneration p-53 related protein 
PCNXL3                0.005   pecanex-like 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press