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Search of human proteins with 109148531
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|109148531 coiled-coil domain containing 98 [Homo sapiens]
(409 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|109148531 coiled-coil domain containing 98 [Homo sapiens] 816 0.0
gi|148529023 hypothetical protein LOC23172 [Homo sapiens] 210 2e-54
gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo sa... 35 0.094
gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo s... 35 0.094
gi|7662230 ring finger protein 40 [Homo sapiens] 35 0.094
gi|109715852 chromosome 6 open reading frame 204 isoform a [Homo... 35 0.094
gi|46249351 homer 2 isoform 2 [Homo sapiens] 35 0.12
gi|46249349 homer 2 isoform 1 [Homo sapiens] 35 0.12
gi|110349797 homer 2 isoform 4 [Homo sapiens] 35 0.12
gi|110349794 homer 2 isoform 3 [Homo sapiens] 35 0.12
gi|10190716 spindle pole body component 25 [Homo sapiens] 35 0.12
gi|118498356 kinectin 1 isoform a [Homo sapiens] 35 0.16
gi|118498368 kinectin 1 isoform c [Homo sapiens] 35 0.16
gi|33620775 kinectin 1 isoform a [Homo sapiens] 35 0.16
gi|21735548 centrosomal protein 2 [Homo sapiens] 34 0.21
gi|64085252 hypothetical protein LOC145508 [Homo sapiens] 34 0.21
gi|63999048 syntaxin binding protein 4 [Homo sapiens] 34 0.21
gi|41872583 Rho-associated, coiled-coil containing protein kinas... 34 0.27
gi|4758646 kinesin family member 3B [Homo sapiens] 33 0.36
gi|187761324 shootin1 isoform a [Homo sapiens] 33 0.36
gi|50511340 shootin1 isoform b [Homo sapiens] 33 0.36
gi|33457330 tetratricopeptide repeat domain 14 isoform a [Homo s... 33 0.36
gi|70909324 sperm associated antigen 16 isoform 1 [Homo sapiens] 33 0.36
gi|56550047 uveal autoantigen with coiled-coil domains and ankyr... 33 0.47
gi|59850762 uveal autoantigen with coiled-coil domains and ankyr... 33 0.47
gi|55770834 centromere protein F [Homo sapiens] 33 0.47
gi|110347418 structural maintenance of chromosomes 2 [Homo sapiens] 33 0.47
gi|110347425 structural maintenance of chromosomes 2 [Homo sapiens] 33 0.47
gi|110347420 structural maintenance of chromosomes 2 [Homo sapiens] 33 0.47
gi|30089962 CDC42-binding protein kinase alpha isoform B [Homo s... 33 0.47
>gi|109148531 coiled-coil domain containing 98 [Homo sapiens]
Length = 409
Score = 816 bits (2109), Expect = 0.0
Identities = 409/409 (100%), Positives = 409/409 (100%)
Query: 1 MEGESTSAVLSGFVLGALAFQHLNTDSDTEGFLLGEVKGEAKNSITDSQMDDVEVVYTID 60
MEGESTSAVLSGFVLGALAFQHLNTDSDTEGFLLGEVKGEAKNSITDSQMDDVEVVYTID
Sbjct: 1 MEGESTSAVLSGFVLGALAFQHLNTDSDTEGFLLGEVKGEAKNSITDSQMDDVEVVYTID 60
Query: 61 IQKYIPCYQLFSFYNSSGEVNEQALKKILSNVKKNVVGWYKFRRHSDQIMTFRERLLHKN 120
IQKYIPCYQLFSFYNSSGEVNEQALKKILSNVKKNVVGWYKFRRHSDQIMTFRERLLHKN
Sbjct: 61 IQKYIPCYQLFSFYNSSGEVNEQALKKILSNVKKNVVGWYKFRRHSDQIMTFRERLLHKN 120
Query: 121 LQEHFSNQDLVFLLLTPSIITESCSTHRLEHSLYKPQKGLFHRVPLVVANLGMSEQLGYK 180
LQEHFSNQDLVFLLLTPSIITESCSTHRLEHSLYKPQKGLFHRVPLVVANLGMSEQLGYK
Sbjct: 121 LQEHFSNQDLVFLLLTPSIITESCSTHRLEHSLYKPQKGLFHRVPLVVANLGMSEQLGYK 180
Query: 181 TVSGSCMSTGFSRAVQTHSSKFFEEDGSLKEVHKINEMYASLQEELKSICKKVEDSEQAV 240
TVSGSCMSTGFSRAVQTHSSKFFEEDGSLKEVHKINEMYASLQEELKSICKKVEDSEQAV
Sbjct: 181 TVSGSCMSTGFSRAVQTHSSKFFEEDGSLKEVHKINEMYASLQEELKSICKKVEDSEQAV 240
Query: 241 DKLVKDVNRLKREIEKRRGAQIQAAREKNIQKDPQENIFLCQALRTFFPNSEFLHSCVMS 300
DKLVKDVNRLKREIEKRRGAQIQAAREKNIQKDPQENIFLCQALRTFFPNSEFLHSCVMS
Sbjct: 241 DKLVKDVNRLKREIEKRRGAQIQAAREKNIQKDPQENIFLCQALRTFFPNSEFLHSCVMS 300
Query: 301 LKNRHVSKSSCNYNHHLDVVDNLTLMVEHTDIPEASPASTPQIIKHKALDLDDRWQFKRS 360
LKNRHVSKSSCNYNHHLDVVDNLTLMVEHTDIPEASPASTPQIIKHKALDLDDRWQFKRS
Sbjct: 301 LKNRHVSKSSCNYNHHLDVVDNLTLMVEHTDIPEASPASTPQIIKHKALDLDDRWQFKRS 360
Query: 361 RLLDTQDKRSKADTGSSNQDKASKMSSPETDEEIEKMKGFGEYSRSPTF 409
RLLDTQDKRSKADTGSSNQDKASKMSSPETDEEIEKMKGFGEYSRSPTF
Sbjct: 361 RLLDTQDKRSKADTGSSNQDKASKMSSPETDEEIEKMKGFGEYSRSPTF 409
>gi|148529023 hypothetical protein LOC23172 [Homo sapiens]
Length = 415
Score = 210 bits (534), Expect = 2e-54
Identities = 103/260 (39%), Positives = 171/260 (65%), Gaps = 1/260 (0%)
Query: 7 SAVLSGFVLGALAFQHLNTDSDTEGFLLGEVKGEAKNSITDSQMDDVEVVYTIDIQKYIP 66
+A +SG+ A+ F N+++D EGFLLGEV+ E SI+DSQ+ + E + I+I + P
Sbjct: 2 AASISGYTFSAVCFHSANSNADHEGFLLGEVRQEETFSISDSQISNTEFLQVIEIHNHQP 61
Query: 67 CYQLFSFYNSSGEVNEQALKKILSNVKKNVVGWYKFRRHSDQIMTFRERLLHKNLQEHFS 126
C +LFSFY+ + +VNE++L +IL + +K V+GWY+FRR++ Q M++RE++LHK L
Sbjct: 62 CSKLFSFYDYASKVNEESLDRILKDRRKKVIGWYRFRRNTQQQMSYREQVLHKQLTRILG 121
Query: 127 NQDLVFLLLTPSIITESCSTHRLEHSLYKPQKGLFHRVPLVVANLGMSEQLGYKTVSGSC 186
DLVFLL + I T + STH LE+ L++P + R+ L + NLG + Q YK S
Sbjct: 122 VPDLVFLLFS-FISTANNSTHALEYVLFRPNRRYNQRISLAIPNLGNTSQQEYKVSSVPN 180
Query: 187 MSTGFSRAVQTHSSKFFEEDGSLKEVHKINEMYASLQEELKSICKKVEDSEQAVDKLVKD 246
S +++ ++ H + FF++DG +K++ I ++Y +LQE+++++C VE SE+ V+ +
Sbjct: 181 TSQSYAKVIKEHGTDFFDKDGVMKDIRAIYQVYNALQEKVQAVCADVEKSERVVESCQAE 240
Query: 247 VNRLKREIEKRRGAQIQAAR 266
VN+L+R+I +R+ + Q R
Sbjct: 241 VNKLRRQITQRKNEKEQERR 260
>gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo
sapiens]
Length = 1843
Score = 35.4 bits (80), Expect = 0.094
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 204 EEDGSLKEVHKINEMYASLQEELKSICKKVEDSEQAVDKLVKDVNRLKREIE--KRRGAQ 261
E + L + K NE+ LK C+K+E EQ +L ++ +LK+ ++ K Q
Sbjct: 629 ELENELHHLEKENELLQKKITNLKITCEKIEALEQENSELERENRKLKKTLDSFKNLTFQ 688
Query: 262 IQAAREKNIQKDPQENIFL 280
+++ ++N Q D +EN+ L
Sbjct: 689 LESLEKENSQLD-EENLEL 706
>gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo
sapiens]
Length = 1870
Score = 35.4 bits (80), Expect = 0.094
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 204 EEDGSLKEVHKINEMYASLQEELKSICKKVEDSEQAVDKLVKDVNRLKREIE--KRRGAQ 261
E + L + K NE+ LK C+K+E EQ +L ++ +LK+ ++ K Q
Sbjct: 629 ELENELHHLEKENELLQKKITNLKITCEKIEALEQENSELERENRKLKKTLDSFKNLTFQ 688
Query: 262 IQAAREKNIQKDPQENIFL 280
+++ ++N Q D +EN+ L
Sbjct: 689 LESLEKENSQLD-EENLEL 706
>gi|7662230 ring finger protein 40 [Homo sapiens]
Length = 1001
Score = 35.4 bits (80), Expect = 0.094
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 188 STGFSRAVQTHSSKFFEEDGSLKEV--------HKINEMYASLQEELKSICKKVEDSEQA 239
S S A Q H+ + E+ L+++ H+I+ Y+ LQ+++ S KV + E
Sbjct: 219 SEPLSEAAQAHTRELGRENRRLQDLATQLQEKHHRISLEYSELQDKVTSAETKVLEMETT 278
Query: 240 VDKLVKDVNRLKREIEKRRGAQIQAAREKN 269
V+ L D+ +L++ +K +A + N
Sbjct: 279 VEDLQWDIEKLRKREQKLNKHLAEALEQLN 308
>gi|109715852 chromosome 6 open reading frame 204 isoform a [Homo
sapiens]
Length = 805
Score = 35.4 bits (80), Expect = 0.094
Identities = 47/215 (21%), Positives = 82/215 (38%), Gaps = 31/215 (14%)
Query: 62 QKYIPCYQLFSFYNSSGEVNEQAL--KKILSNVKKNVVGWYKFRRHSDQIMTFRERLLHK 119
Q Y P YQ FS + S ++ E L K+I+ + +K + R +++ R H
Sbjct: 348 QSYSPGYQDFSKWESMLKIKEGLLRQKEIVIDRQKQQITHLHERIRDNEL-----RAQHA 402
Query: 120 NLQEHFSNQDLVFLLLTPSIITESCSTHRLEHSLYKPQKGLFHRVPLVVANLGMSEQLGY 179
L + + +D L P S T E S+ Q+G F +
Sbjct: 403 MLGHYVNCEDSYVASLQPQYENTSLQTPFSEESVSHSQQGEFEQ---------------- 446
Query: 180 KTVSGSCMSTGFSRAVQTHSSKFFEEDGSLKEVHKINEMYASLQEELKSICKKVEDSEQA 239
K S + ++ S F EE L+E K + Y S LK C+K + +
Sbjct: 447 KLASTEKEVLQLNEFLKQRLSLFSEEKKKLEEKLKTRDRYIS---SLKKKCQKESEQNKE 503
Query: 240 VDKLVKDVNRLKREIE-----KRRGAQIQAAREKN 269
+ ++ + + ++ + + Q+Q EKN
Sbjct: 504 KQRRIETLEKYLADLPTLDDVQSQSLQLQILEEKN 538
>gi|46249351 homer 2 isoform 2 [Homo sapiens]
Length = 354
Score = 35.0 bits (79), Expect = 0.12
Identities = 19/74 (25%), Positives = 39/74 (52%)
Query: 188 STGFSRAVQTHSSKFFEEDGSLKEVHKINEMYASLQEELKSICKKVEDSEQAVDKLVKDV 247
+T R ++ ++ E++ LK++ K +E+ L E + + +K+E +E+ L V
Sbjct: 246 NTQLKRRIEELEAELREKETELKDLRKQSEIIPQLMSECEYVSEKLEAAERDNQNLEDKV 305
Query: 248 NRLKREIEKRRGAQ 261
LK +IE+ + Q
Sbjct: 306 RSLKTDIEESKYRQ 319
>gi|46249349 homer 2 isoform 1 [Homo sapiens]
Length = 343
Score = 35.0 bits (79), Expect = 0.12
Identities = 19/74 (25%), Positives = 39/74 (52%)
Query: 188 STGFSRAVQTHSSKFFEEDGSLKEVHKINEMYASLQEELKSICKKVEDSEQAVDKLVKDV 247
+T R ++ ++ E++ LK++ K +E+ L E + + +K+E +E+ L V
Sbjct: 235 NTQLKRRIEELEAELREKETELKDLRKQSEIIPQLMSECEYVSEKLEAAERDNQNLEDKV 294
Query: 248 NRLKREIEKRRGAQ 261
LK +IE+ + Q
Sbjct: 295 RSLKTDIEESKYRQ 308
>gi|110349797 homer 2 isoform 4 [Homo sapiens]
Length = 299
Score = 35.0 bits (79), Expect = 0.12
Identities = 19/74 (25%), Positives = 39/74 (52%)
Query: 188 STGFSRAVQTHSSKFFEEDGSLKEVHKINEMYASLQEELKSICKKVEDSEQAVDKLVKDV 247
+T R ++ ++ E++ LK++ K +E+ L E + + +K+E +E+ L V
Sbjct: 191 NTQLKRRIEELEAELREKETELKDLRKQSEIIPQLMSECEYVSEKLEAAERDNQNLEDKV 250
Query: 248 NRLKREIEKRRGAQ 261
LK +IE+ + Q
Sbjct: 251 RSLKTDIEESKYRQ 264
>gi|110349794 homer 2 isoform 3 [Homo sapiens]
Length = 288
Score = 35.0 bits (79), Expect = 0.12
Identities = 19/74 (25%), Positives = 39/74 (52%)
Query: 188 STGFSRAVQTHSSKFFEEDGSLKEVHKINEMYASLQEELKSICKKVEDSEQAVDKLVKDV 247
+T R ++ ++ E++ LK++ K +E+ L E + + +K+E +E+ L V
Sbjct: 180 NTQLKRRIEELEAELREKETELKDLRKQSEIIPQLMSECEYVSEKLEAAERDNQNLEDKV 239
Query: 248 NRLKREIEKRRGAQ 261
LK +IE+ + Q
Sbjct: 240 RSLKTDIEESKYRQ 253
>gi|10190716 spindle pole body component 25 [Homo sapiens]
Length = 224
Score = 35.0 bits (79), Expect = 0.12
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 179 YKTVSGSCMSTGFSRAVQTHSSKFFEEDGS--LKEVHKINEMYASLQEELKSICKKVEDS 236
+K+ SC G R S K F E S LKE ++ EM+ Q ++ K +++
Sbjct: 20 FKSTDTSCQMAGL-RDTYKDSIKAFAEKLSVKLKEEERMVEMFLEYQNQISRQNKLIQEK 78
Query: 237 EQAVDKLVKDVNRLKREIEKRRGAQIQAAREKNIQK 272
+ + KL+ +V K+E+E A IQ +E+ +K
Sbjct: 79 KDNLLKLIAEVKGKKQELEVLT-ANIQDLKEEYSRK 113
>gi|118498356 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 34.7 bits (78), Expect = 0.16
Identities = 46/187 (24%), Positives = 80/187 (42%), Gaps = 30/187 (16%)
Query: 115 RLLHKNLQEHFSNQDLVFLLLTPSIITESCSTHRLEHSLYK-PQKGLFHRVPLVVANLGM 173
RLL + LQ SN+ F +L +L+ + + P K + ++ +
Sbjct: 683 RLLEEQLQHEISNKMEEFKILNDQNKALKSEVQKLQTLVSEQPNKDVVEQMEKCIQE--K 740
Query: 174 SEQLGYKTVSGSCMSTGFSR---------AVQTHSSKFFEEDGSLKEVHKINEMYASLQE 224
E+L KTV + TG + A++T +S +E LK +ASL E
Sbjct: 741 DEKL--KTVE-ELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAKQNDQVSFASLVE 797
Query: 225 ELKSICKKVEDSEQAVDKLV-----------KDVNRLKREI----EKRRGAQIQAAREKN 269
ELK + + + ++V++L+ K V LK+EI E+ Q++ A++ +
Sbjct: 798 ELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEIGNVQLEKAQQLS 857
Query: 270 IQKDPQE 276
I QE
Sbjct: 858 ITSKVQE 864
>gi|118498368 kinectin 1 isoform c [Homo sapiens]
Length = 1300
Score = 34.7 bits (78), Expect = 0.16
Identities = 46/187 (24%), Positives = 80/187 (42%), Gaps = 30/187 (16%)
Query: 115 RLLHKNLQEHFSNQDLVFLLLTPSIITESCSTHRLEHSLYK-PQKGLFHRVPLVVANLGM 173
RLL + LQ SN+ F +L +L+ + + P K + ++ +
Sbjct: 683 RLLEEQLQHEISNKMEEFKILNDQNKALKSEVQKLQTLVSEQPNKDVVEQMEKCIQE--K 740
Query: 174 SEQLGYKTVSGSCMSTGFSR---------AVQTHSSKFFEEDGSLKEVHKINEMYASLQE 224
E+L KTV + TG + A++T +S +E LK +ASL E
Sbjct: 741 DEKL--KTVE-ELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAKQNDQVSFASLVE 797
Query: 225 ELKSICKKVEDSEQAVDKLV-----------KDVNRLKREI----EKRRGAQIQAAREKN 269
ELK + + + ++V++L+ K V LK+EI E+ Q++ A++ +
Sbjct: 798 ELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEIGNVQLEKAQQLS 857
Query: 270 IQKDPQE 276
I QE
Sbjct: 858 ITSKVQE 864
>gi|33620775 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 34.7 bits (78), Expect = 0.16
Identities = 46/187 (24%), Positives = 80/187 (42%), Gaps = 30/187 (16%)
Query: 115 RLLHKNLQEHFSNQDLVFLLLTPSIITESCSTHRLEHSLYK-PQKGLFHRVPLVVANLGM 173
RLL + LQ SN+ F +L +L+ + + P K + ++ +
Sbjct: 683 RLLEEQLQHEISNKMEEFKILNDQNKALKSEVQKLQTLVSEQPNKDVVEQMEKCIQE--K 740
Query: 174 SEQLGYKTVSGSCMSTGFSR---------AVQTHSSKFFEEDGSLKEVHKINEMYASLQE 224
E+L KTV + TG + A++T +S +E LK +ASL E
Sbjct: 741 DEKL--KTVE-ELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAKQNDQVSFASLVE 797
Query: 225 ELKSICKKVEDSEQAVDKLV-----------KDVNRLKREI----EKRRGAQIQAAREKN 269
ELK + + + ++V++L+ K V LK+EI E+ Q++ A++ +
Sbjct: 798 ELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEIGNVQLEKAQQLS 857
Query: 270 IQKDPQE 276
I QE
Sbjct: 858 ITSKVQE 864
>gi|21735548 centrosomal protein 2 [Homo sapiens]
Length = 2442
Score = 34.3 bits (77), Expect = 0.21
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 215 INEMYASLQEELKSICKKVEDSEQAVDKLVKDVNRLKREIEKRRGAQIQAAREKNIQKDP 274
+N+ L+EE +S+C ++E +EQA + L D+ E EKRR +A EKN +
Sbjct: 615 LNQQLLQLEEENQSVCSRMEAAEQARNALQVDL----AEAEKRR----EALWEKNTHLEA 666
Query: 275 Q 275
Q
Sbjct: 667 Q 667
>gi|64085252 hypothetical protein LOC145508 [Homo sapiens]
Length = 1094
Score = 34.3 bits (77), Expect = 0.21
Identities = 49/226 (21%), Positives = 88/226 (38%), Gaps = 31/226 (13%)
Query: 157 QKGLFHRVPLVVANLGMSEQLGYKTVSGSCMSTGFSRAVQTHSSKFFEEDGSLKEVHKIN 216
+KGL H+V + +Q Y+ G F R V+ ++ L+ +
Sbjct: 323 RKGLQHQVSQI-----SKQQSNYQDEQGE--DWRFRRGVEREKQDLEKQMSDLRVQLNFS 375
Query: 217 EMYASLQEELKSICKKVEDSEQAVDKLVKDVNRLKREIEKRRGAQIQAAREKNIQKDPQE 276
M + L+E + C + +D E+A L V L RE+E Q+Q + K+ Q
Sbjct: 376 AMASELEEVKR--CMERKDKEKA--HLASQVENLTRELENGEKQQLQML---DRLKEIQN 428
Query: 277 NIFLCQALRTFFPNSEFLHSCVMSLKNRHVSKSSCNYNHHLDVVDNLTLMVEHTDIPEAS 336
+ C+A R +S RH ++ +L + + E +
Sbjct: 429 HFDTCEAERKH-------ADLQISELTRHAEDATKQAERYLSELQQSEALKEEAE----- 476
Query: 337 PASTPQIIKHKALDLDDRWQFKRSRLLDTQDKRSKAD---TGSSNQ 379
+ +K KA + +W+ K +L +K+S+ TG +NQ
Sbjct: 477 --KRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQ 520
>gi|63999048 syntaxin binding protein 4 [Homo sapiens]
Length = 553
Score = 34.3 bits (77), Expect = 0.21
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 204 EEDGSLKEVHKINEMYASLQEELKSICKKVEDSEQAVDKLVKDVNRLKREIEKRRGAQIQ 263
E D +LKEV+ + E ++ K + +++++ +Q +V++ L+ I AQ Q
Sbjct: 303 ERDDALKEVNTLKEKLLESDKQRKQLTEELQNVKQEAKAVVEETRALRSRIHLAEAAQRQ 362
Query: 264 AAREKNIQKDPQENIFLCQA 283
A ++ D +E I L +A
Sbjct: 363 A---HGMEMDYEEVIRLLEA 379
>gi|41872583 Rho-associated, coiled-coil containing protein kinase 2
[Homo sapiens]
Length = 1388
Score = 33.9 bits (76), Expect = 0.27
Identities = 45/201 (22%), Positives = 81/201 (40%), Gaps = 9/201 (4%)
Query: 183 SGSCMSTGFSRAVQTHSSKFFEEDGSLKEVHKINEMYASLQEELKSICKKVEDSEQAVDK 242
S SC T ++ + S+ ++ E H NEM A +EEL+ CK V + K
Sbjct: 425 SPSCRETDSIQSRKNEESQEIQKKLYTLEEHLSNEMQA--KEELEQKCKSVNTRLEKTAK 482
Query: 243 LVKDVNRLKREIEKRRGAQIQAAREKNIQKDPQENIFLCQALRTFFPNSEFLHSCVMSLK 302
+++ L++ +E A Q REK + + +N + L + V SLK
Sbjct: 483 ELEEEITLRKSVE---SALRQLEREKALLQ--HKNAEYQRKADHEADKKRNLENDVNSLK 537
Query: 303 NRHVSKSSCNYNHHL--DVVDNLTLMVEHTDIPEASPASTPQIIKHKALDLDDRWQFKRS 360
++ N N + + V+ L ++ T+ + + T ++ + + Q S
Sbjct: 538 DQLEDLKKRNQNSQISTEKVNQLQRQLDETNALLRTESDTAARLRKTQAESSKQIQQLES 597
Query: 361 RLLDTQDKRSKADTGSSNQDK 381
D QDK +T +K
Sbjct: 598 NNRDLQDKNCLLETAKLKLEK 618
>gi|4758646 kinesin family member 3B [Homo sapiens]
Length = 747
Score = 33.5 bits (75), Expect = 0.36
Identities = 51/214 (23%), Positives = 85/214 (39%), Gaps = 37/214 (17%)
Query: 210 KEVHKINEMYASLQEELKSICKKVEDSEQAVDKLVKDVNRLKREIEKRR----GAQIQAA 265
+E ++ E Y+SLQ+E+ KK++ + + +++ L+ E K R Q +
Sbjct: 518 EETLELKETYSSLQQEVDIKTKKLKKLFSKLQAVKAEIHDLQEEHIKERQELEQTQNELT 577
Query: 266 REKNIQKDPQENIFLCQAL-----RTFFPNSE---FLHSCVMSLKNRHVSK---SSCNYN 314
RE ++ EN + R FF E LH + L+N+ + K S+ Y
Sbjct: 578 RELKLKHLIIENFIPLEEKSKIMNRAFFDEEEDHWKLHP-ITRLENQQMMKRPVSAVGYK 636
Query: 315 HHLDVVDNLTLMVE-------------HTDIPEAS------PASTP--QIIKHKALDLDD 353
L +++M+ D+P + PA P Q AL +D
Sbjct: 637 RPLSQHARMSMMIRPEARYRAENIVLLELDMPSRTTRDYEGPAIAPKVQAALDAALQDED 696
Query: 354 RWQFKRSRLLDTQDKRSKADTGSSNQDKASKMSS 387
Q S T +K+SKA S + +S SS
Sbjct: 697 EIQVDASSFESTANKKSKARPKSGRKSGSSSSSS 730
>gi|187761324 shootin1 isoform a [Homo sapiens]
Length = 631
Score = 33.5 bits (75), Expect = 0.36
Identities = 39/187 (20%), Positives = 83/187 (44%), Gaps = 20/187 (10%)
Query: 81 NEQALKKILSNVKKNVVGWY--------KFRRHSDQIMTFRERLLHKNLQEHFSNQDLVF 132
+E+ ++++++K+ +G Y K + D+I R+ + K L+E +V
Sbjct: 5 DEEKQLQLITSLKEQAIGEYEDLRAENQKTKEKCDKIRQERDEAV-KKLEEFQKISHMVI 63
Query: 133 ----LLLTPSIITESC--STHRLEHSLYKPQKGLFHRVPLVVANLGMSEQLGYKTVSGSC 186
+ I ++C S L L K K L L +A LG +
Sbjct: 64 EEVNFMQNHLEIEKTCRESAEALATKLNKENKTLKRISMLYMAKLGPDVITEEINIDDED 123
Query: 187 MSTGFSRAVQTHSSKFFEEDGSLKEVHKINEMYASLQEELKSICKKVEDSEQAVDKLVKD 246
+T A +T S + K++ ++ + S+QEE K + ++E+ + + +++++
Sbjct: 124 STTDTDGAAETCVSVQCQ-----KQIKELRDQIVSVQEEKKILAIELENLKSKLVEVIEE 178
Query: 247 VNRLKRE 253
VN++K+E
Sbjct: 179 VNKVKQE 185
Score = 29.6 bits (65), Expect = 5.2
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 210 KEVHKINEMYASLQEELKSICKKVEDSEQAVDKLVKDVNRLKREIEK 256
KE+H + + L+E+ K + K ++SE+ L V+ L++ + +
Sbjct: 301 KEIHNLKQQLELLEEDKKELELKYQNSEEKARNLKHSVDELQKRVNQ 347
>gi|50511340 shootin1 isoform b [Homo sapiens]
Length = 456
Score = 33.5 bits (75), Expect = 0.36
Identities = 39/187 (20%), Positives = 83/187 (44%), Gaps = 20/187 (10%)
Query: 81 NEQALKKILSNVKKNVVGWY--------KFRRHSDQIMTFRERLLHKNLQEHFSNQDLVF 132
+E+ ++++++K+ +G Y K + D+I R+ + K L+E +V
Sbjct: 5 DEEKQLQLITSLKEQAIGEYEDLRAENQKTKEKCDKIRQERDEAV-KKLEEFQKISHMVI 63
Query: 133 ----LLLTPSIITESC--STHRLEHSLYKPQKGLFHRVPLVVANLGMSEQLGYKTVSGSC 186
+ I ++C S L L K K L L +A LG +
Sbjct: 64 EEVNFMQNHLEIEKTCRESAEALATKLNKENKTLKRISMLYMAKLGPDVITEEINIDDED 123
Query: 187 MSTGFSRAVQTHSSKFFEEDGSLKEVHKINEMYASLQEELKSICKKVEDSEQAVDKLVKD 246
+T A +T S + K++ ++ + S+QEE K + ++E+ + + +++++
Sbjct: 124 STTDTDGAAETCVSVQCQ-----KQIKELRDQIVSVQEEKKILAIELENLKSKLVEVIEE 178
Query: 247 VNRLKRE 253
VN++K+E
Sbjct: 179 VNKVKQE 185
Score = 29.6 bits (65), Expect = 5.2
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 210 KEVHKINEMYASLQEELKSICKKVEDSEQAVDKLVKDVNRLKREIEK 256
KE+H + + L+E+ K + K ++SE+ L V+ L++ + +
Sbjct: 301 KEIHNLKQQLELLEEDKKELELKYQNSEEKARNLKHSVDELQKRVNQ 347
>gi|33457330 tetratricopeptide repeat domain 14 isoform a [Homo
sapiens]
Length = 770
Score = 33.5 bits (75), Expect = 0.36
Identities = 19/74 (25%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 202 FFEEDGSLKEVHKINEMYASLQE-----ELKSICKKVEDSEQAVDKLVKDVNRLKREIEK 256
F + + +L+++HK + L+E E K KK+E S + + KL+K+ RLK++ K
Sbjct: 415 FKDAEDALQKLHKYMQKSLELREKQAEKEEKQKTKKIETSAEKLRKLLKEEKRLKKKRRK 474
Query: 257 RRGAQIQAAREKNI 270
+ ++ ++++
Sbjct: 475 STSSSSVSSADESV 488
>gi|70909324 sperm associated antigen 16 isoform 1 [Homo sapiens]
Length = 631
Score = 33.5 bits (75), Expect = 0.36
Identities = 31/135 (22%), Positives = 62/135 (45%), Gaps = 20/135 (14%)
Query: 142 ESCSTHRLEHSLYKPQKGLFHRVPLVVANLGMSEQLGYKTVSGSCMSTGFSRAVQTHSSK 201
++ T LE P K H VP V+ + + + G +R + S+
Sbjct: 86 QATDTEILERKTVLPSK---HAVPEVIEDF----------LCNFLIKMGMTRTLDCFQSE 132
Query: 202 FFE--EDG--SLKEVHKINEMYAS---LQEELKSICKKVEDSEQAVDKLVKDVNRLKREI 254
++E + G L+ V + ++Y L+ E K++ K ++ +QA DK +D+ ++++E
Sbjct: 133 WYELIQKGVTELRTVGNVPDVYTQIMLLENENKNLKKDLKHYKQAADKAREDLLKIQKER 192
Query: 255 EKRRGAQIQAAREKN 269
+ R + +EKN
Sbjct: 193 DFHRMHHKRIVQEKN 207
>gi|56550047 uveal autoantigen with coiled-coil domains and ankyrin
repeats isoform 2 [Homo sapiens]
Length = 1403
Score = 33.1 bits (74), Expect = 0.47
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 15/88 (17%)
Query: 201 KFFEEDGSLKEV----------HKINEMYASLQEELKSICKKVEDSEQAVDKLVKDVNRL 250
K E +G KE+ K M +SL E+ KK+ + E+ +K + ++ +L
Sbjct: 595 KVTEMEGQAKELSAKLALSIPAEKFENMKSSLSNEVNEKAKKLVEMEREHEKSLSEIRQL 654
Query: 251 KREIEKRRGAQIQAAREKNIQKDPQENI 278
KRE+E ++A ++++ + E +
Sbjct: 655 KRELE-----NVKAKLAQHVKPEEHEQV 677
>gi|59850762 uveal autoantigen with coiled-coil domains and ankyrin
repeats isoform 1 [Homo sapiens]
Length = 1416
Score = 33.1 bits (74), Expect = 0.47
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 15/88 (17%)
Query: 201 KFFEEDGSLKEV----------HKINEMYASLQEELKSICKKVEDSEQAVDKLVKDVNRL 250
K E +G KE+ K M +SL E+ KK+ + E+ +K + ++ +L
Sbjct: 608 KVTEMEGQAKELSAKLALSIPAEKFENMKSSLSNEVNEKAKKLVEMEREHEKSLSEIRQL 667
Query: 251 KREIEKRRGAQIQAAREKNIQKDPQENI 278
KRE+E ++A ++++ + E +
Sbjct: 668 KRELE-----NVKAKLAQHVKPEEHEQV 690
>gi|55770834 centromere protein F [Homo sapiens]
Length = 3114
Score = 33.1 bits (74), Expect = 0.47
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 180 KTVSGSCMSTGFSRAVQTHSSKFFEEDGSLKEVHKINEMYASLQ-EELKSIC--KKVEDS 236
+ V+ C +A + EE+ L+ + I ++ A L+ +E K +C +++++S
Sbjct: 2270 EAVAALCGDQEIMKATEQSLDPPIEEEHQLR--NSIEKLRARLEADEKKQLCVLQQLKES 2327
Query: 237 EQAVDKLVKDVNRLKREIEKRRGAQIQAAREKNIQKDPQENI 278
E D L V L+RE+E R Q AA E K E +
Sbjct: 2328 EHHADLLKGRVENLERELEIARTNQEHAALEAENSKGEVETL 2369
Score = 31.6 bits (70), Expect = 1.4
Identities = 13/47 (27%), Positives = 29/47 (61%)
Query: 209 LKEVHKINEMYASLQEELKSICKKVEDSEQAVDKLVKDVNRLKREIE 255
L+ + + Y LQ + + ++VED +Q ++K ++++RLK +I+
Sbjct: 2486 LQGLDEAKNNYIVLQSSVNGLIQEVEDGKQKLEKKDEEISRLKNQIQ 2532
>gi|110347418 structural maintenance of chromosomes 2 [Homo sapiens]
Length = 1197
Score = 33.1 bits (74), Expect = 0.47
Identities = 42/206 (20%), Positives = 83/206 (40%), Gaps = 20/206 (9%)
Query: 205 EDGSLKEVHKINEMYASLQEELKSICKKVEDSEQAVDKLVKDVNRL---KREIEKRRGAQ 261
E+ L + Y QEEL ++ K +E+SE+ + K K++ R K E+ + +
Sbjct: 724 EEADLLQTKLQQSSYHKQQEELDALKKTIEESEETL-KNTKEIQRKAEEKYEVLENKMKN 782
Query: 262 IQAAREKNIQKDPQENIFLCQALRTFFPNSEFLHSC----VMSLKNRHVSKSSCNYNHHL 317
+A RE+ + KD Q+ + C + + + ++L+ + + +Y L
Sbjct: 783 AEAEREREL-KDAQKKLD-CAKTKADASSKKMKEKQQEVEAITLELEELKREHTSYKQQL 840
Query: 318 DVVDNLTLMVE-HTDIPEASPASTPQIIKHKALDLDDRWQFKRSRLLDTQDKRSKADTGS 376
+ V+ E ++ A A + + ++ K+ ++ QD KA
Sbjct: 841 EAVNEAIKSYESQIEVMAAEVAKNKESVNKAQEEVT-----KQKEVITAQDTVIKAKYAE 895
Query: 377 ----SNQDKASKMSSPETDEEIEKMK 398
Q+ S++ E D I K K
Sbjct: 896 VAKHKEQNNDSQLKIKELDHNISKHK 921
>gi|110347425 structural maintenance of chromosomes 2 [Homo sapiens]
Length = 1197
Score = 33.1 bits (74), Expect = 0.47
Identities = 42/206 (20%), Positives = 83/206 (40%), Gaps = 20/206 (9%)
Query: 205 EDGSLKEVHKINEMYASLQEELKSICKKVEDSEQAVDKLVKDVNRL---KREIEKRRGAQ 261
E+ L + Y QEEL ++ K +E+SE+ + K K++ R K E+ + +
Sbjct: 724 EEADLLQTKLQQSSYHKQQEELDALKKTIEESEETL-KNTKEIQRKAEEKYEVLENKMKN 782
Query: 262 IQAAREKNIQKDPQENIFLCQALRTFFPNSEFLHSC----VMSLKNRHVSKSSCNYNHHL 317
+A RE+ + KD Q+ + C + + + ++L+ + + +Y L
Sbjct: 783 AEAEREREL-KDAQKKLD-CAKTKADASSKKMKEKQQEVEAITLELEELKREHTSYKQQL 840
Query: 318 DVVDNLTLMVE-HTDIPEASPASTPQIIKHKALDLDDRWQFKRSRLLDTQDKRSKADTGS 376
+ V+ E ++ A A + + ++ K+ ++ QD KA
Sbjct: 841 EAVNEAIKSYESQIEVMAAEVAKNKESVNKAQEEVT-----KQKEVITAQDTVIKAKYAE 895
Query: 377 ----SNQDKASKMSSPETDEEIEKMK 398
Q+ S++ E D I K K
Sbjct: 896 VAKHKEQNNDSQLKIKELDHNISKHK 921
>gi|110347420 structural maintenance of chromosomes 2 [Homo sapiens]
Length = 1197
Score = 33.1 bits (74), Expect = 0.47
Identities = 42/206 (20%), Positives = 83/206 (40%), Gaps = 20/206 (9%)
Query: 205 EDGSLKEVHKINEMYASLQEELKSICKKVEDSEQAVDKLVKDVNRL---KREIEKRRGAQ 261
E+ L + Y QEEL ++ K +E+SE+ + K K++ R K E+ + +
Sbjct: 724 EEADLLQTKLQQSSYHKQQEELDALKKTIEESEETL-KNTKEIQRKAEEKYEVLENKMKN 782
Query: 262 IQAAREKNIQKDPQENIFLCQALRTFFPNSEFLHSC----VMSLKNRHVSKSSCNYNHHL 317
+A RE+ + KD Q+ + C + + + ++L+ + + +Y L
Sbjct: 783 AEAEREREL-KDAQKKLD-CAKTKADASSKKMKEKQQEVEAITLELEELKREHTSYKQQL 840
Query: 318 DVVDNLTLMVE-HTDIPEASPASTPQIIKHKALDLDDRWQFKRSRLLDTQDKRSKADTGS 376
+ V+ E ++ A A + + ++ K+ ++ QD KA
Sbjct: 841 EAVNEAIKSYESQIEVMAAEVAKNKESVNKAQEEVT-----KQKEVITAQDTVIKAKYAE 895
Query: 377 ----SNQDKASKMSSPETDEEIEKMK 398
Q+ S++ E D I K K
Sbjct: 896 VAKHKEQNNDSQLKIKELDHNISKHK 921
>gi|30089962 CDC42-binding protein kinase alpha isoform B [Homo
sapiens]
Length = 1719
Score = 33.1 bits (74), Expect = 0.47
Identities = 14/54 (25%), Positives = 31/54 (57%)
Query: 208 SLKEVHKINEMYASLQEELKSICKKVEDSEQAVDKLVKDVNRLKREIEKRRGAQ 261
+++E +INE L + + + + V D E+ VD +++ V L++E+ + A+
Sbjct: 575 AMQEFMEINERLTELHTQKQKLARHVRDKEEEVDLVMQKVESLRQELRRTERAK 628
Score = 28.9 bits (63), Expect = 8.8
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 200 SKFFEEDGSLKEVHKINEMYASLQEELKSICKKVEDSEQAVDKLVKDVNRLKREIEKRRG 259
S F+EE+ S +E NE +K++ K++ DSE L K++ LK ++EK R
Sbjct: 697 SIFYEEELSKREGIHANE--------IKNLKKELHDSEGQQLALNKEIMILKDKLEKTR- 747
Query: 260 AQIQAAREK 268
+ Q+ RE+
Sbjct: 748 RESQSEREE 756
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.130 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,630,637
Number of Sequences: 37866
Number of extensions: 623574
Number of successful extensions: 3763
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 104
Number of HSP's that attempted gapping in prelim test: 3401
Number of HSP's gapped (non-prelim): 465
length of query: 409
length of database: 18,247,518
effective HSP length: 105
effective length of query: 304
effective length of database: 14,271,588
effective search space: 4338562752
effective search space used: 4338562752
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.