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Search of human proteins with 4557563
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4557563 excision repair cross-complementing rodent repair
deficiency, complementation group 3 [Homo sapiens]
(782 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4557563 excision repair cross-complementing rodent repair def... 1572 0.0
gi|58219008 RAD26L hypothetical protein [Homo sapiens] 39 0.024
gi|221219026 pleckstrin homology-like domain, family B, member 1... 36 0.12
gi|221219024 pleckstrin homology-like domain, family B, member 1... 36 0.12
gi|38424073 pleckstrin homology-like domain, family B, member 1 ... 36 0.12
gi|46852388 cell-cycle and apoptosis regulatory protein 1 [Homo ... 34 0.46
gi|28195388 RAB11 family interacting protein 4 (class II) [Homo ... 34 0.60
gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa... 33 1.0
gi|86262149 zinc finger and BTB domain containing 7C [Homo sapiens] 33 1.0
gi|169204908 PREDICTED: similar to Thyroid hormone receptor inte... 33 1.3
gi|169205597 PREDICTED: similar to Thyroid hormone receptor inte... 33 1.3
gi|169203883 PREDICTED: hypothetical protein [Homo sapiens] 33 1.3
gi|27886568 interferon induced with helicase C domain 1 [Homo sa... 32 1.7
gi|156142199 euchromatic histone-lysine N-methyltransferase 2 is... 32 1.7
gi|156142197 euchromatic histone-lysine N-methyltransferase 2 is... 32 1.7
gi|116284376 histone deacetylase 2 [Homo sapiens] 32 2.3
gi|71361682 nuclear mitotic apparatus protein 1 [Homo sapiens] 32 2.3
gi|223555989 hypothetical protein LOC51101 [Homo sapiens] 32 3.0
gi|116235458 GalNAc-4-sulfotransferase 2 [Homo sapiens] 32 3.0
gi|50312664 ubiquitin specific protease 16 isoform b [Homo sapiens] 32 3.0
gi|5454156 ubiquitin specific protease 16 isoform a [Homo sapiens] 32 3.0
gi|75992941 ubiquitin specific protease 16 isoform a [Homo sapiens] 32 3.0
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens] 32 3.0
gi|109637771 calpastatin isoform l [Homo sapiens] 32 3.0
gi|109637769 calpastatin isoform k [Homo sapiens] 32 3.0
gi|109637767 calpastatin isoform j [Homo sapiens] 32 3.0
gi|109637765 calpastatin isoform i [Homo sapiens] 32 3.0
gi|109637763 calpastatin isoform h [Homo sapiens] 32 3.0
gi|109637761 calpastatin isoform g [Homo sapiens] 32 3.0
gi|109637759 calpastatin isoform f [Homo sapiens] 32 3.0
>gi|4557563 excision repair cross-complementing rodent repair
deficiency, complementation group 3 [Homo sapiens]
Length = 782
Score = 1572 bits (4071), Expect = 0.0
Identities = 782/782 (100%), Positives = 782/782 (100%)
Query: 1 MGKRDRADRDKKKSRKRHYEDEEDDEEDAPGNDPQEAVPSAAGKQVDESGTKVDEYGAKD 60
MGKRDRADRDKKKSRKRHYEDEEDDEEDAPGNDPQEAVPSAAGKQVDESGTKVDEYGAKD
Sbjct: 1 MGKRDRADRDKKKSRKRHYEDEEDDEEDAPGNDPQEAVPSAAGKQVDESGTKVDEYGAKD 60
Query: 61 YRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTA 120
YRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTA
Sbjct: 61 YRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTA 120
Query: 121 YSLYAAVSVGLQTSDITEYLRKLSKTGVPDGIMQFIKLCTVSYGKVKLVLKHNRYFVESC 180
YSLYAAVSVGLQTSDITEYLRKLSKTGVPDGIMQFIKLCTVSYGKVKLVLKHNRYFVESC
Sbjct: 121 YSLYAAVSVGLQTSDITEYLRKLSKTGVPDGIMQFIKLCTVSYGKVKLVLKHNRYFVESC 180
Query: 181 HPDVIQHLLQDPVIRECRLRNSEGEATELITETFTSKSAISKTAESSGGPSTSRVTDPQG 240
HPDVIQHLLQDPVIRECRLRNSEGEATELITETFTSKSAISKTAESSGGPSTSRVTDPQG
Sbjct: 181 HPDVIQHLLQDPVIRECRLRNSEGEATELITETFTSKSAISKTAESSGGPSTSRVTDPQG 240
Query: 241 KSDIPMDLFDFYEQMDKDEEEEEETQTVSFEVKQEMIEELQKRCIHLEYPLLAEYDFRND 300
KSDIPMDLFDFYEQMDKDEEEEEETQTVSFEVKQEMIEELQKRCIHLEYPLLAEYDFRND
Sbjct: 241 KSDIPMDLFDFYEQMDKDEEEEEETQTVSFEVKQEMIEELQKRCIHLEYPLLAEYDFRND 300
Query: 301 SVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKR 360
SVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKR
Sbjct: 301 SVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKR 360
Query: 361 CLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRS 420
CLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRS
Sbjct: 361 CLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRS 420
Query: 421 WEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDL 480
WEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDL
Sbjct: 421 WEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDL 480
Query: 481 NFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNK 540
NFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNK
Sbjct: 481 NFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNK 540
Query: 541 FRACQFLIKFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNP 600
FRACQFLIKFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNP
Sbjct: 541 FRACQFLIKFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNP 600
Query: 601 KINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFY 660
KINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFY
Sbjct: 601 KINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFY 660
Query: 661 SLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEDLAFSTKEEQQQLLQKVLAAT 720
SLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEDLAFSTKEEQQQLLQKVLAAT
Sbjct: 661 SLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEDLAFSTKEEQQQLLQKVLAAT 720
Query: 721 DLDAEEEVVAGEFGSRSSQASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVHPLFKRF 780
DLDAEEEVVAGEFGSRSSQASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVHPLFKRF
Sbjct: 721 DLDAEEEVVAGEFGSRSSQASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVHPLFKRF 780
Query: 781 RK 782
RK
Sbjct: 781 RK 782
>gi|58219008 RAD26L hypothetical protein [Homo sapiens]
Length = 712
Score = 38.5 bits (88), Expect = 0.024
Identities = 29/129 (22%), Positives = 57/129 (44%), Gaps = 22/129 (17%)
Query: 356 TVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPI------GCSVAIST 409
T +K L++ +V + WK + W ++ + KD + C +A++T
Sbjct: 206 TAKKMFLIVAPLSV-LYNWKDELDTWGYF---RVTVLHGNRKDNELIRVKQRKCEIALTT 261
Query: 410 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTI--PAKMFRRVLTIVQAHCKLGLT 467
Y L ++ L + EW +I+DE H I P V+ ++ + ++GLT
Sbjct: 262 YETL----------RLCLDELNSLEWSAVIVDEAHRIKNPKARVTEVMKALKCNVRIGLT 311
Query: 468 ATLVREDDK 476
T+++ + K
Sbjct: 312 GTILQNNMK 320
>gi|221219026 pleckstrin homology-like domain, family B, member 1
isoform b [Homo sapiens]
Length = 1319
Score = 36.2 bits (82), Expect = 0.12
Identities = 36/143 (25%), Positives = 66/143 (46%), Gaps = 14/143 (9%)
Query: 181 HPDVIQHLLQDPVIRECRLRNSEGEATELITETFTSKSAIS-KTAESSGGPSTSRVTDPQ 239
H ++ HL P RE GE E +T + +S+ S +T+ S+GG S +
Sbjct: 1041 HHSILHHL---PAGRE------RGEEGEHAYDTLSLESSDSMETSISTGGNSACSPDNMS 1091
Query: 240 GKSDIPMDLFDFYEQMDKDEEEEE----ETQTVSFEVKQEMIEELQKRCIHLEYPLLAEY 295
S + M + E+M K+ E+ E++ E++++ +EE ++R +E L +E
Sbjct: 1092 SASGLDMGKIEEMEKMLKEAHAEKNRLMESREREMELRRQALEEERRRREQVERRLQSES 1151
Query: 296 DFRNDSVNPDINIDLKPTAVLRP 318
R V ++ + K + RP
Sbjct: 1152 ARRQQLVEKEVKMREKQFSQARP 1174
>gi|221219024 pleckstrin homology-like domain, family B, member 1
isoform a [Homo sapiens]
Length = 1377
Score = 36.2 bits (82), Expect = 0.12
Identities = 36/143 (25%), Positives = 66/143 (46%), Gaps = 14/143 (9%)
Query: 181 HPDVIQHLLQDPVIRECRLRNSEGEATELITETFTSKSAIS-KTAESSGGPSTSRVTDPQ 239
H ++ HL P RE GE E +T + +S+ S +T+ S+GG S +
Sbjct: 1088 HHSILHHL---PAGRE------RGEEGEHAYDTLSLESSDSMETSISTGGNSACSPDNMS 1138
Query: 240 GKSDIPMDLFDFYEQMDKDEEEEE----ETQTVSFEVKQEMIEELQKRCIHLEYPLLAEY 295
S + M + E+M K+ E+ E++ E++++ +EE ++R +E L +E
Sbjct: 1139 SASGLDMGKIEEMEKMLKEAHAEKNRLMESREREMELRRQALEEERRRREQVERRLQSES 1198
Query: 296 DFRNDSVNPDINIDLKPTAVLRP 318
R V ++ + K + RP
Sbjct: 1199 ARRQQLVEKEVKMREKQFSQARP 1221
>gi|38424073 pleckstrin homology-like domain, family B, member 1
isoform a [Homo sapiens]
Length = 1377
Score = 36.2 bits (82), Expect = 0.12
Identities = 36/143 (25%), Positives = 66/143 (46%), Gaps = 14/143 (9%)
Query: 181 HPDVIQHLLQDPVIRECRLRNSEGEATELITETFTSKSAIS-KTAESSGGPSTSRVTDPQ 239
H ++ HL P RE GE E +T + +S+ S +T+ S+GG S +
Sbjct: 1088 HHSILHHL---PAGRE------RGEEGEHAYDTLSLESSDSMETSISTGGNSACSPDNMS 1138
Query: 240 GKSDIPMDLFDFYEQMDKDEEEEE----ETQTVSFEVKQEMIEELQKRCIHLEYPLLAEY 295
S + M + E+M K+ E+ E++ E++++ +EE ++R +E L +E
Sbjct: 1139 SASGLDMGKIEEMEKMLKEAHAEKNRLMESREREMELRRQALEEERRRREQVERRLQSES 1198
Query: 296 DFRNDSVNPDINIDLKPTAVLRP 318
R V ++ + K + RP
Sbjct: 1199 ARRQQLVEKEVKMREKQFSQARP 1221
>gi|46852388 cell-cycle and apoptosis regulatory protein 1 [Homo
sapiens]
Length = 1150
Score = 34.3 bits (77), Expect = 0.46
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 3 KRDRADRDKKKSRKRHYEDEEDDEEDAPGNDPQEAVPSAAGKQVDESGTKVDE 55
K + DRD++K + +D +DD+E N+ E P A + DE + +E
Sbjct: 836 KDKKEDRDERKKEDKRKDDSKDDDETEEDNNQDEYDPMEAEEAEDEEDDRDEE 888
>gi|28195388 RAB11 family interacting protein 4 (class II) [Homo
sapiens]
Length = 637
Score = 33.9 bits (76), Expect = 0.60
Identities = 36/107 (33%), Positives = 47/107 (43%), Gaps = 5/107 (4%)
Query: 198 RLRNSEGEATELITETFTSKSAISKTAESSGGPSTSRVTDPQGKSDIPMDLFDFYEQMDK 257
R++ E E TEL T KS K E S R+ D + MDL+ MDK
Sbjct: 425 RVQQLEEENTELRTTVTRLKSQTEKLDEERQRMS-DRLEDTSLRLKDEMDLYK--RMMDK 481
Query: 258 DEEEEEETQTVSFEVKQEMIEELQKRCIHLE-YPLLAEYDFRNDSVN 303
+ E Q E QE+IE+L+K HL+ Y L E R S +
Sbjct: 482 LRQNRLEFQKER-EATQELIEDLRKELEHLQMYKLDCERPGRGRSAS 527
>gi|29244924 chromodomain helicase DNA binding protein 6 [Homo
sapiens]
Length = 2715
Score = 33.1 bits (74), Expect = 1.0
Identities = 70/351 (19%), Positives = 135/351 (38%), Gaps = 63/351 (17%)
Query: 170 LKHNRYFVESCHPDVIQHLLQDPVIREC--RLRNSEGEATELITET--------FTSKSA 219
+K+ + C ++ L +DP I + R RN + + + TE +
Sbjct: 320 VKYRNFSYLHCKWATMEELEKDPRIAQKIKRFRNKQAQMKHIFTEPDEDLFNPDYVEVDR 379
Query: 220 ISKTAESSGGPSTSRVTDPQGK-SDIPMDLFDFYEQMDKDEEEEEETQTVSFEVKQEMIE 278
I + A + + VT K +P YE+ + EE+ + V +++
Sbjct: 380 ILEVAHTKDAETGEEVTHYLVKWCSLP------YEESTWELEEDVDPAKVKEFESLQVLP 433
Query: 279 ELQKRCIHLEYPLLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVI 338
E++ H+E P + S + K + LR YQ + + + N R I
Sbjct: 434 EIK----HVERPASDSWQKLEKSR------EYKNSNQLREYQLEGMNWLLFNWYNRKNCI 483
Query: 339 VLP-CGAGKSLVGVTAACTVRKRCL----VLGNSAVSVEQWKAQFKMWSTID-----DSQ 388
+ G GK++ +T + R + ++ ++ W+ +F+ W+ ++ SQ
Sbjct: 484 LADEMGLGKTIQSITFLSEIFLRGIHGPFLIIAPLSTITNWEREFRTWTEMNAIVYHGSQ 543
Query: 389 ICR--------FTSDAKDKPIG----CSVAISTYSMLGHTTKRSWEAERVMEWLKTQEWG 436
I R DA+ P+ V I+T+ M+ LK W
Sbjct: 544 ISRQMIQQYEMVYRDAQGNPLSGVFKFHVVITTFEMILADCPE----------LKKIHWS 593
Query: 437 LMILDEVHTIPAKMFRRV--LTIVQAHCKLGLTATLVRE--DDKIVDLNFL 483
+I+DE H + + + + L ++ K+ LT T ++ ++ LNFL
Sbjct: 594 CVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFL 644
>gi|86262149 zinc finger and BTB domain containing 7C [Homo sapiens]
Length = 619
Score = 33.1 bits (74), Expect = 1.0
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 5 DRADRDKKKSRKRHYEDEEDDEEDAPGNDPQEAVPSAAGKQVDESGTKVDEYGAKDY 61
D D D ++ + E+EEDD++D QE +P +S +K D K Y
Sbjct: 144 DDEDDDDEEDEEEEEEEEEDDDDDTEDFADQENLPDPQDISCHQSPSKTDHLTEKAY 200
>gi|169204908 PREDICTED: similar to Thyroid hormone receptor
interactor 11 [Homo sapiens]
Length = 352
Score = 32.7 bits (73), Expect = 1.3
Identities = 40/176 (22%), Positives = 78/176 (44%), Gaps = 30/176 (17%)
Query: 125 AAVSVGLQTSDITEYLRKLSK----TGVPDGIMQFIKLCTVSYGKVKLVLKHNRYFVESC 180
A+ +Q + E L +SK T + Q +K +S +++VL+H + +S
Sbjct: 4 ASHQASVQVESLQEQLNVVSKQRDETALLSASQQQVKQYALSLANLQMVLQHFQKEEKSM 63
Query: 181 HPDVIQHLLQDPVIRECRLRNSEGEATELITETFTSKSAISKTAESSGGPSTSRVTDPQG 240
+ +Q Q +I E + + A L + + + + + + S SR+T
Sbjct: 64 YSAELQK--QKQLIAEWKKK-----AESLERKVISLQERLDEA--DAALDSASRLT---- 110
Query: 241 KSDIPMDLFDFYEQMDKDEEEEEETQTVSFEVKQEMIEELQKRCIHLEYPLLAEYD 296
EQ+D EE+ EE + + E +QEM++++QK+ ++L L + D
Sbjct: 111 ------------EQLDLKEEQIEELKKQN-EFQQEMLDDVQKKLVNLANSLEGKVD 153
>gi|169205597 PREDICTED: similar to Thyroid hormone receptor
interactor 11 [Homo sapiens]
Length = 352
Score = 32.7 bits (73), Expect = 1.3
Identities = 40/176 (22%), Positives = 78/176 (44%), Gaps = 30/176 (17%)
Query: 125 AAVSVGLQTSDITEYLRKLSK----TGVPDGIMQFIKLCTVSYGKVKLVLKHNRYFVESC 180
A+ +Q + E L +SK T + Q +K +S +++VL+H + +S
Sbjct: 4 ASHQASVQVESLQEQLNVVSKQRDETALLSASQQQVKQYALSLANLQMVLQHFQKEEKSM 63
Query: 181 HPDVIQHLLQDPVIRECRLRNSEGEATELITETFTSKSAISKTAESSGGPSTSRVTDPQG 240
+ +Q Q +I E + + A L + + + + + + S SR+T
Sbjct: 64 YSAELQK--QKQLIAEWKKK-----AESLERKVISLQERLDEA--DAALDSASRLT---- 110
Query: 241 KSDIPMDLFDFYEQMDKDEEEEEETQTVSFEVKQEMIEELQKRCIHLEYPLLAEYD 296
EQ+D EE+ EE + + E +QEM++++QK+ ++L L + D
Sbjct: 111 ------------EQLDLKEEQIEELKKQN-EFQQEMLDDVQKKLVNLANSLEGKVD 153
>gi|169203883 PREDICTED: hypothetical protein [Homo sapiens]
Length = 352
Score = 32.7 bits (73), Expect = 1.3
Identities = 40/176 (22%), Positives = 78/176 (44%), Gaps = 30/176 (17%)
Query: 125 AAVSVGLQTSDITEYLRKLSK----TGVPDGIMQFIKLCTVSYGKVKLVLKHNRYFVESC 180
A+ +Q + E L +SK T + Q +K +S +++VL+H + +S
Sbjct: 4 ASHQASVQVESLQEQLNVVSKQRDETALLSASQQQVKQYALSLANLQMVLQHFQKEEKSM 63
Query: 181 HPDVIQHLLQDPVIRECRLRNSEGEATELITETFTSKSAISKTAESSGGPSTSRVTDPQG 240
+ +Q Q +I E + + A L + + + + + + S SR+T
Sbjct: 64 YSAELQK--QKQLIAEWKKK-----AESLERKVISLQERLDEA--DAALDSASRLT---- 110
Query: 241 KSDIPMDLFDFYEQMDKDEEEEEETQTVSFEVKQEMIEELQKRCIHLEYPLLAEYD 296
EQ+D EE+ EE + + E +QEM++++QK+ ++L L + D
Sbjct: 111 ------------EQLDLKEEQIEELKKQN-EFQQEMLDDVQKKLVNLANSLEGKVD 153
>gi|27886568 interferon induced with helicase C domain 1 [Homo
sapiens]
Length = 1025
Score = 32.3 bits (72), Expect = 1.7
Identities = 38/161 (23%), Positives = 67/161 (41%), Gaps = 20/161 (12%)
Query: 299 NDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAA---- 354
+D N +P LRPYQ + + ++ +I LP G+GK+ V V A
Sbjct: 291 SDEENVAARASPEPELQLRPYQMEVAQPAL---EGKNIIICLPTGSGKTRVAVYIAKDHL 347
Query: 355 -----CTVRKRCLVLGNSAVSVEQ-WKAQF-----KMWSTIDDSQICRFTSDAKDKPIGC 403
+ + +VL N + VEQ ++ +F K + I S + + C
Sbjct: 348 DKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVKSC 407
Query: 404 SVAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVH 444
+ IST +L ++ E ++ ++ L+I+DE H
Sbjct: 408 DIIISTAQILENSLLNLENGEDA--GVQLSDFSLIIIDECH 446
Score = 30.0 bits (66), Expect = 8.6
Identities = 12/45 (26%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 581 YGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQ 625
+ P +Q E+ +++ F+ KIN + + V + D+ E N++I+
Sbjct: 763 FKPMTQNEQKEVISKFRTG-KINLLIATTVAEEGLDIKECNIVIR 806
>gi|156142199 euchromatic histone-lysine N-methyltransferase 2
isoform b [Homo sapiens]
Length = 1176
Score = 32.3 bits (72), Expect = 1.7
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 9/71 (12%)
Query: 5 DRADRDKKK---------SRKRHYEDEEDDEEDAPGNDPQEAVPSAAGKQVDESGTKVDE 55
+R D D K S + E+EE++EE+ + +E +G Q D SG+
Sbjct: 281 ERVDSDSKSEVEALTEQLSEEEEEEEEEEEEEEEEEEEEEEEEDEESGNQSDRSGSSGRR 340
Query: 56 YGAKDYRLQMP 66
K +R P
Sbjct: 341 KAKKKWRKDSP 351
>gi|156142197 euchromatic histone-lysine N-methyltransferase 2
isoform a [Homo sapiens]
Length = 1210
Score = 32.3 bits (72), Expect = 1.7
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 9/71 (12%)
Query: 5 DRADRDKKK---------SRKRHYEDEEDDEEDAPGNDPQEAVPSAAGKQVDESGTKVDE 55
+R D D K S + E+EE++EE+ + +E +G Q D SG+
Sbjct: 281 ERVDSDSKSEVEALTEQLSEEEEEEEEEEEEEEEEEEEEEEEEDEESGNQSDRSGSSGRR 340
Query: 56 YGAKDYRLQMP 66
K +R P
Sbjct: 341 KAKKKWRKDSP 351
>gi|116284376 histone deacetylase 2 [Homo sapiens]
Length = 582
Score = 32.0 bits (71), Expect = 2.3
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 2 GKRDRADRDKKKSRKRHYEDEEDDEEDAPGNDPQEAVPSAAGKQVDESGTKVDEYGAKDY 61
G+R+ AD KK ++K E+++ + ED + +E K D SG K D G K
Sbjct: 525 GRRNVADH-KKGAKKARIEEDKKETEDKKTDVKEE------DKSKDNSGEKTDTKGTKSE 577
Query: 62 RLQMP 66
+L P
Sbjct: 578 QLSNP 582
>gi|71361682 nuclear mitotic apparatus protein 1 [Homo sapiens]
Length = 2115
Score = 32.0 bits (71), Expect = 2.3
Identities = 31/154 (20%), Positives = 55/154 (35%), Gaps = 13/154 (8%)
Query: 584 TSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRV 643
T+Q E++++ Q + ++ + + L + + GG +QEAQRL
Sbjct: 1534 TAQVEQLEVFQR-EQTKQVEELSKKLADSDQASKVQQQKLKAVQAQGGESQQEAQRLQAQ 1592
Query: 644 LR------AKKGMVAEEYN------AFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVIT 691
L ++K AE Y Y Q QE+ + L + +
Sbjct: 1593 LNELQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQNQELQEQLRSLEQLQKENKELRAEA 1652
Query: 692 KLAGMEEEDLAFSTKEEQQQLLQKVLAATDLDAE 725
+ G E + TKE +Q L+A+
Sbjct: 1653 ERLGHELQQAGLKTKEAEQTCRHLTAQVRSLEAQ 1686
>gi|223555989 hypothetical protein LOC51101 [Homo sapiens]
Length = 325
Score = 31.6 bits (70), Expect = 3.0
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 311 KPTAVLRPYQEKSLRKMFGNGRARSGVIVL--PCGAGKSLVGV 351
KPT+ + Y+ +L+K G A SG L P GAGK++VGV
Sbjct: 161 KPTSRTQVYKPPALKKSNSPGTASSGSSRLPQPSGAGKTVVGV 203
>gi|116235458 GalNAc-4-sulfotransferase 2 [Homo sapiens]
Length = 443
Score = 31.6 bits (70), Expect = 3.0
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 16/100 (16%)
Query: 195 RECRLRNSEGEATELITETFTSKSAISKTAESSGGPSTSRVTDPQGKSDI---------P 245
+E L NSE +T L+T+T S+ ++S+G P+ + QG + P
Sbjct: 94 KENLLLNSE-RSTRLLTKTSHSQGGDQALSKSTGSPTEKLIEKRQGAKTVFNKFSNMNWP 152
Query: 246 MDLFDFYEQMDKDE--EEEEETQTVSFEVKQEMIEELQKR 283
+D+ + + KD ++ EETQ E ++ ++E K+
Sbjct: 153 VDIHPLNKSLVKDNKWKKTEETQ----EKRRSFLQEFCKK 188
>gi|50312664 ubiquitin specific protease 16 isoform b [Homo sapiens]
Length = 822
Score = 31.6 bits (70), Expect = 3.0
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 2 GKRDRADRDKKKSRKRHYEDEEDDEEDAPGNDP----QEAVPSAAGKQVDESGTKVDEYG 57
GK+ D++ KK+ EDE+ D E+ ND + +PS K + + K +
Sbjct: 394 GKKSVNDKNLKKT----VEDEDQDSEEEKDNDSYIKERSDIPSGTSKHLQKKAKKQAKKQ 449
Query: 58 AKDYRLQMPLK 68
AK+ R Q ++
Sbjct: 450 AKNQRRQQKIQ 460
>gi|5454156 ubiquitin specific protease 16 isoform a [Homo sapiens]
Length = 823
Score = 31.6 bits (70), Expect = 3.0
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 2 GKRDRADRDKKKSRKRHYEDEEDDEEDAPGNDP----QEAVPSAAGKQVDESGTKVDEYG 57
GK+ D++ KK+ EDE+ D E+ ND + +PS K + + K +
Sbjct: 395 GKKSVNDKNLKKT----VEDEDQDSEEEKDNDSYIKERSDIPSGTSKHLQKKAKKQAKKQ 450
Query: 58 AKDYRLQMPLK 68
AK+ R Q ++
Sbjct: 451 AKNQRRQQKIQ 461
>gi|75992941 ubiquitin specific protease 16 isoform a [Homo sapiens]
Length = 823
Score = 31.6 bits (70), Expect = 3.0
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 2 GKRDRADRDKKKSRKRHYEDEEDDEEDAPGNDP----QEAVPSAAGKQVDESGTKVDEYG 57
GK+ D++ KK+ EDE+ D E+ ND + +PS K + + K +
Sbjct: 395 GKKSVNDKNLKKT----VEDEDQDSEEEKDNDSYIKERSDIPSGTSKHLQKKAKKQAKKQ 450
Query: 58 AKDYRLQMPLK 68
AK+ R Q ++
Sbjct: 451 AKNQRRQQKIQ 461
>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
Length = 1682
Score = 31.6 bits (70), Expect = 3.0
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 16 KRHYEDEEDDEEDAPGNDPQEAVPSAAGKQVDESGTKVDEYGAKDYRLQM 65
++ EDEE +E D+ P + P + + GT +D AK ++ Q+
Sbjct: 1295 EKESEDEESEEPDSTTGTPPSSAPDPKNHHIIKFGTNIDLSDAKRWKPQL 1344
>gi|109637771 calpastatin isoform l [Homo sapiens]
Length = 654
Score = 31.6 bits (70), Expect = 3.0
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 230 PSTSRVTDPQGKSDIPMDLFDFYEQMDKDEEEEEETQT-----VSFEVKQEMIEELQKR 283
P S+ P GKS + L D + + EE EEE T VS + IEEL KR
Sbjct: 98 PVESKPDKPSGKSGMDAALDDLIDTLGGPEETEEENTTYTGPEVSDPMSSTYIEELGKR 156
>gi|109637769 calpastatin isoform k [Homo sapiens]
Length = 673
Score = 31.6 bits (70), Expect = 3.0
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 230 PSTSRVTDPQGKSDIPMDLFDFYEQMDKDEEEEEETQT-----VSFEVKQEMIEELQKR 283
P S+ P GKS + L D + + EE EEE T VS + IEEL KR
Sbjct: 117 PVESKPDKPSGKSGMDAALDDLIDTLGGPEETEEENTTYTGPEVSDPMSSTYIEELGKR 175
>gi|109637767 calpastatin isoform j [Homo sapiens]
Length = 667
Score = 31.6 bits (70), Expect = 3.0
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 230 PSTSRVTDPQGKSDIPMDLFDFYEQMDKDEEEEEETQT-----VSFEVKQEMIEELQKR 283
P S+ P GKS + L D + + EE EEE T VS + IEEL KR
Sbjct: 98 PVESKPDKPSGKSGMDAALDDLIDTLGGPEETEEENTTYTGPEVSDPMSSTYIEELGKR 156
>gi|109637765 calpastatin isoform i [Homo sapiens]
Length = 708
Score = 31.6 bits (70), Expect = 3.0
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 230 PSTSRVTDPQGKSDIPMDLFDFYEQMDKDEEEEEETQT-----VSFEVKQEMIEELQKR 283
P S+ P GKS + L D + + EE EEE T VS + IEEL KR
Sbjct: 139 PVESKPDKPSGKSGMDAALDDLIDTLGGPEETEEENTTYTGPEVSDPMSSTYIEELGKR 197
>gi|109637763 calpastatin isoform h [Homo sapiens]
Length = 769
Score = 31.6 bits (70), Expect = 3.0
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 230 PSTSRVTDPQGKSDIPMDLFDFYEQMDKDEEEEEETQT-----VSFEVKQEMIEELQKR 283
P S+ P GKS + L D + + EE EEE T VS + IEEL KR
Sbjct: 200 PVESKPDKPSGKSGMDAALDDLIDTLGGPEETEEENTTYTGPEVSDPMSSTYIEELGKR 258
>gi|109637761 calpastatin isoform g [Homo sapiens]
Length = 772
Score = 31.6 bits (70), Expect = 3.0
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 230 PSTSRVTDPQGKSDIPMDLFDFYEQMDKDEEEEEETQT-----VSFEVKQEMIEELQKR 283
P S+ P GKS + L D + + EE EEE T VS + IEEL KR
Sbjct: 203 PVESKPDKPSGKSGMDAALDDLIDTLGGPEETEEENTTYTGPEVSDPMSSTYIEELGKR 261
>gi|109637759 calpastatin isoform f [Homo sapiens]
Length = 750
Score = 31.6 bits (70), Expect = 3.0
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 230 PSTSRVTDPQGKSDIPMDLFDFYEQMDKDEEEEEETQT-----VSFEVKQEMIEELQKR 283
P S+ P GKS + L D + + EE EEE T VS + IEEL KR
Sbjct: 181 PVESKPDKPSGKSGMDAALDDLIDTLGGPEETEEENTTYTGPEVSDPMSSTYIEELGKR 239
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,122,714
Number of Sequences: 37866
Number of extensions: 1303106
Number of successful extensions: 8855
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 8238
Number of HSP's gapped (non-prelim): 563
length of query: 782
length of database: 18,247,518
effective HSP length: 110
effective length of query: 672
effective length of database: 14,082,258
effective search space: 9463277376
effective search space used: 9463277376
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.