Guide to the Human Genome
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Name: LOC341378 Sequence: fasta or formatted (352aa) NCBI GI: 169205597
Description:

PREDICTED: similar to Thyroid hormone receptor interactor 11

Not currently referenced in the text

Other entries for this name:
alt mRNA {352aa} PREDICTED: hypothetical protein
alt mRNA {352aa} PREDICTED: similar to Thyroid hormone receptor interactor 11
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         21           2
 C cysteine            0.3          1           1
 D aspartate           4.3         15           2
 E glutamate           8.8         31           2
 F phenylalanine       2.8         10           1
 G glycine             4.3         15           2
 H histidine           2.6          9           1
 I isoleucine          2.0          7           1
 K lysine              7.7         27           3
 L leucine            12.8         45           3
 M methionine          2.8         10           1
 N asparagine          4.5         16           1
 P proline             5.7         20           3
 Q glutamine           8.2         29           3
 R arginine            5.4         19           3
 S serine              9.9         35           2
 T threonine           2.8         10           1
 V valine              7.4         26           2
 W tryptophan          1.1          4           1
 Y tyrosine            0.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Thyroid hormone receptor inte... 
LOC341378             1.000   PREDICTED: similar to Thyroid hormone receptor inte...
LOC341378             1.000   PREDICTED: hypothetical protein 
TRIP11                0.886   thyroid hormone receptor interactor 11 
SMC1B                 0.041   SMC1 structural maintenance of chromosomes 1-like 2 ...
ZNF853                0.036   zinc finger protein 853 
MYH13                 0.033   myosin, heavy polypeptide 13, skeletal muscle [Homo...
CEP290                0.033   centrosomal protein 290kDa 
CENPE                 0.033   centromere protein E 
GIGYF2                0.033   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.033   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.033   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.033   GRB10 interacting GYF protein 2 isoform b 
MYO18A                0.033   myosin 18A isoform b 
MYO18A                0.033   myosin 18A isoform a 
CLIP1                 0.032   restin isoform b 
CLIP1                 0.032   restin isoform a 
GOLGA1                0.032   golgin 97 
LEKR1                 0.032   leucine, glutamate and lysine rich 1 
RAD50                 0.030   RAD50 homolog isoform 2 
RAD50                 0.030   RAD50 homolog isoform 1 
LOC100133758          0.030   PREDICTED: hypothetical protein, partial 
CENPF                 0.030   centromere protein F 
MYH7                  0.029   myosin, heavy chain 7, cardiac muscle, beta 
ERC1                  0.029   RAB6-interacting protein 2 isoform epsilon 
ERC1                  0.029   RAB6-interacting protein 2 isoform delta 
RB1CC1                0.029   Rb1-inducible coiled coil protein 1 isoform 2 [Homo...
RB1CC1                0.029   Rb1-inducible coiled coil protein 1 isoform 1 [Homo...
EEA1                  0.029   early endosome antigen 1, 162kD 
LOC727832             0.029   golgi autoantigen, golgin subfamily a-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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