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Search of human proteins with 4557499
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4557499 C-terminal binding protein 2 isoform 1 [Homo
sapiens]
(445 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|145580578 C-terminal binding protein 2 isoform 1 [Homo sapiens] 898 0.0
gi|4557499 C-terminal binding protein 2 isoform 1 [Homo sapiens] 898 0.0
gi|145580575 C-terminal binding protein 2 isoform 2 [Homo sapiens] 858 0.0
gi|61743967 C-terminal binding protein 1 isoform 2 [Homo sapiens] 725 0.0
gi|4557497 C-terminal binding protein 1 isoform 1 [Homo sapiens] 725 0.0
gi|23308577 phosphoglycerate dehydrogenase [Homo sapiens] 138 1e-32
gi|6912396 glyoxylate reductase/hydroxypyruvate reductase [Homo ... 86 7e-17
gi|23957680 ral guanine nucleotide dissociation stimulator-like ... 34 0.31
gi|239753975 PREDICTED: hypothetical protein [Homo sapiens] 33 0.52
gi|238624188 diffuse panbronchiolitis critical region 1 protein ... 32 0.89
gi|239740773 PREDICTED: similar to diffuse panbronchiolitis crit... 32 0.89
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 32 1.5
gi|198041703 solute carrier family 22 (organic cation transporte... 31 2.6
gi|195972857 Rho/Rac guanine nucleotide exchange factor 18 isofo... 30 3.4
gi|41327769 Rho/Rac guanine nucleotide exchange factor 18 isofor... 30 3.4
gi|4759156 small nuclear ribonucleoprotein polypeptide A [Homo s... 30 3.4
gi|46049063 exportin 6 [Homo sapiens] 30 3.4
gi|157502173 hypothetical protein LOC348487 [Homo sapiens] 30 4.4
gi|50345831 forkhead box J3 [Homo sapiens] 30 4.4
gi|83367077 mucin 16 [Homo sapiens] 30 5.8
gi|239741018 PREDICTED: hypothetical protein XP_002342056 [Homo ... 30 5.8
gi|19923597 Sin3A-associated protein, 130kDa isoform b [Homo sap... 30 5.8
gi|225579127 Sin3A-associated protein, 130kDa isoform a [Homo sa... 30 5.8
gi|116292174 fidgetin-like 2 [Homo sapiens] 30 5.8
gi|64084766 fidgetin [Homo sapiens] 30 5.8
gi|31543535 R3H domain containing 1 [Homo sapiens] 30 5.8
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 30 5.8
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 30 5.8
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 30 5.8
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 30 5.8
>gi|145580578 C-terminal binding protein 2 isoform 1 [Homo sapiens]
Length = 445
Score = 898 bits (2320), Expect = 0.0
Identities = 445/445 (100%), Positives = 445/445 (100%)
Query: 1 MALVDKHKVKRQRLDRICEGIRPQIMNGPLHPRPLVALLDGRDCTVEMPILKDLATVAFC 60
MALVDKHKVKRQRLDRICEGIRPQIMNGPLHPRPLVALLDGRDCTVEMPILKDLATVAFC
Sbjct: 1 MALVDKHKVKRQRLDRICEGIRPQIMNGPLHPRPLVALLDGRDCTVEMPILKDLATVAFC 60
Query: 61 DAQSTQEIHEKVLNEAVGAMMYHTITLTREDLEKFKALRVIVRIGSGYDNVDIKAAGELG 120
DAQSTQEIHEKVLNEAVGAMMYHTITLTREDLEKFKALRVIVRIGSGYDNVDIKAAGELG
Sbjct: 61 DAQSTQEIHEKVLNEAVGAMMYHTITLTREDLEKFKALRVIVRIGSGYDNVDIKAAGELG 120
Query: 121 IAVCNIPSAAVEETADSTICHILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRG 180
IAVCNIPSAAVEETADSTICHILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRG
Sbjct: 121 IAVCNIPSAAVEETADSTICHILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRG 180
Query: 181 ETLGLIGFGRTGQAVAVRAKAFGFSVIFYDPYLQDGIERSLGVQRVYTLQDLLYQSDCVS 240
ETLGLIGFGRTGQAVAVRAKAFGFSVIFYDPYLQDGIERSLGVQRVYTLQDLLYQSDCVS
Sbjct: 181 ETLGLIGFGRTGQAVAVRAKAFGFSVIFYDPYLQDGIERSLGVQRVYTLQDLLYQSDCVS 240
Query: 241 LHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDVHES 300
LHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDVHES
Sbjct: 241 LHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDVHES 300
Query: 301 EPFSFAQGPLKDAPNLICTPHTAWYSEQASLEMREAAATEIRRAITGRIPESLRNCVNKE 360
EPFSFAQGPLKDAPNLICTPHTAWYSEQASLEMREAAATEIRRAITGRIPESLRNCVNKE
Sbjct: 301 EPFSFAQGPLKDAPNLICTPHTAWYSEQASLEMREAAATEIRRAITGRIPESLRNCVNKE 360
Query: 361 FFVTSAPWSVIDQQAIHPELNGATYRYPPGIVGVAPGGLPAAMEGIIPGGIPVTHNLPTV 420
FFVTSAPWSVIDQQAIHPELNGATYRYPPGIVGVAPGGLPAAMEGIIPGGIPVTHNLPTV
Sbjct: 361 FFVTSAPWSVIDQQAIHPELNGATYRYPPGIVGVAPGGLPAAMEGIIPGGIPVTHNLPTV 420
Query: 421 AHPSQAPSPNQPTKHGDNREHPNEQ 445
AHPSQAPSPNQPTKHGDNREHPNEQ
Sbjct: 421 AHPSQAPSPNQPTKHGDNREHPNEQ 445
>gi|4557499 C-terminal binding protein 2 isoform 1 [Homo sapiens]
Length = 445
Score = 898 bits (2320), Expect = 0.0
Identities = 445/445 (100%), Positives = 445/445 (100%)
Query: 1 MALVDKHKVKRQRLDRICEGIRPQIMNGPLHPRPLVALLDGRDCTVEMPILKDLATVAFC 60
MALVDKHKVKRQRLDRICEGIRPQIMNGPLHPRPLVALLDGRDCTVEMPILKDLATVAFC
Sbjct: 1 MALVDKHKVKRQRLDRICEGIRPQIMNGPLHPRPLVALLDGRDCTVEMPILKDLATVAFC 60
Query: 61 DAQSTQEIHEKVLNEAVGAMMYHTITLTREDLEKFKALRVIVRIGSGYDNVDIKAAGELG 120
DAQSTQEIHEKVLNEAVGAMMYHTITLTREDLEKFKALRVIVRIGSGYDNVDIKAAGELG
Sbjct: 61 DAQSTQEIHEKVLNEAVGAMMYHTITLTREDLEKFKALRVIVRIGSGYDNVDIKAAGELG 120
Query: 121 IAVCNIPSAAVEETADSTICHILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRG 180
IAVCNIPSAAVEETADSTICHILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRG
Sbjct: 121 IAVCNIPSAAVEETADSTICHILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRG 180
Query: 181 ETLGLIGFGRTGQAVAVRAKAFGFSVIFYDPYLQDGIERSLGVQRVYTLQDLLYQSDCVS 240
ETLGLIGFGRTGQAVAVRAKAFGFSVIFYDPYLQDGIERSLGVQRVYTLQDLLYQSDCVS
Sbjct: 181 ETLGLIGFGRTGQAVAVRAKAFGFSVIFYDPYLQDGIERSLGVQRVYTLQDLLYQSDCVS 240
Query: 241 LHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDVHES 300
LHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDVHES
Sbjct: 241 LHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDVHES 300
Query: 301 EPFSFAQGPLKDAPNLICTPHTAWYSEQASLEMREAAATEIRRAITGRIPESLRNCVNKE 360
EPFSFAQGPLKDAPNLICTPHTAWYSEQASLEMREAAATEIRRAITGRIPESLRNCVNKE
Sbjct: 301 EPFSFAQGPLKDAPNLICTPHTAWYSEQASLEMREAAATEIRRAITGRIPESLRNCVNKE 360
Query: 361 FFVTSAPWSVIDQQAIHPELNGATYRYPPGIVGVAPGGLPAAMEGIIPGGIPVTHNLPTV 420
FFVTSAPWSVIDQQAIHPELNGATYRYPPGIVGVAPGGLPAAMEGIIPGGIPVTHNLPTV
Sbjct: 361 FFVTSAPWSVIDQQAIHPELNGATYRYPPGIVGVAPGGLPAAMEGIIPGGIPVTHNLPTV 420
Query: 421 AHPSQAPSPNQPTKHGDNREHPNEQ 445
AHPSQAPSPNQPTKHGDNREHPNEQ
Sbjct: 421 AHPSQAPSPNQPTKHGDNREHPNEQ 445
>gi|145580575 C-terminal binding protein 2 isoform 2 [Homo sapiens]
Length = 985
Score = 858 bits (2216), Expect = 0.0
Identities = 425/425 (100%), Positives = 425/425 (100%)
Query: 21 IRPQIMNGPLHPRPLVALLDGRDCTVEMPILKDLATVAFCDAQSTQEIHEKVLNEAVGAM 80
IRPQIMNGPLHPRPLVALLDGRDCTVEMPILKDLATVAFCDAQSTQEIHEKVLNEAVGAM
Sbjct: 561 IRPQIMNGPLHPRPLVALLDGRDCTVEMPILKDLATVAFCDAQSTQEIHEKVLNEAVGAM 620
Query: 81 MYHTITLTREDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTIC 140
MYHTITLTREDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTIC
Sbjct: 621 MYHTITLTREDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTIC 680
Query: 141 HILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAK 200
HILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAK
Sbjct: 681 HILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAK 740
Query: 201 AFGFSVIFYDPYLQDGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQ 260
AFGFSVIFYDPYLQDGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQ
Sbjct: 741 AFGFSVIFYDPYLQDGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQ 800
Query: 261 MRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFAQGPLKDAPNLICTP 320
MRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFAQGPLKDAPNLICTP
Sbjct: 801 MRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFAQGPLKDAPNLICTP 860
Query: 321 HTAWYSEQASLEMREAAATEIRRAITGRIPESLRNCVNKEFFVTSAPWSVIDQQAIHPEL 380
HTAWYSEQASLEMREAAATEIRRAITGRIPESLRNCVNKEFFVTSAPWSVIDQQAIHPEL
Sbjct: 861 HTAWYSEQASLEMREAAATEIRRAITGRIPESLRNCVNKEFFVTSAPWSVIDQQAIHPEL 920
Query: 381 NGATYRYPPGIVGVAPGGLPAAMEGIIPGGIPVTHNLPTVAHPSQAPSPNQPTKHGDNRE 440
NGATYRYPPGIVGVAPGGLPAAMEGIIPGGIPVTHNLPTVAHPSQAPSPNQPTKHGDNRE
Sbjct: 921 NGATYRYPPGIVGVAPGGLPAAMEGIIPGGIPVTHNLPTVAHPSQAPSPNQPTKHGDNRE 980
Query: 441 HPNEQ 445
HPNEQ
Sbjct: 981 HPNEQ 985
>gi|61743967 C-terminal binding protein 1 isoform 2 [Homo sapiens]
Length = 429
Score = 725 bits (1871), Expect = 0.0
Identities = 345/426 (80%), Positives = 388/426 (91%)
Query: 20 GIRPQIMNGPLHPRPLVALLDGRDCTVEMPILKDLATVAFCDAQSTQEIHEKVLNEAVGA 79
G+RP IMNGPLHPRPLVALLDGRDCTVEMPILKD+ATVAFCDAQSTQEIHEKVLNEAVGA
Sbjct: 3 GVRPPIMNGPLHPRPLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGA 62
Query: 80 MMYHTITLTREDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTI 139
+MYHTITLTREDLEKFKALR+IVRIGSG+DN+DIK+AG+LGIAVCN+P+A+VEETADST+
Sbjct: 63 LMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTL 122
Query: 140 CHILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRA 199
CHILNLYRR TWL+QALREGTRVQSVEQIREVASGAARIRGETLG+IG GR GQAVA+RA
Sbjct: 123 CHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRA 182
Query: 200 KAFGFSVIFYDPYLQDGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIK 259
KAFGF+V+FYDPYL DG+ER+LG+QRV TLQDLL+ SDCV+LHC LNEHNHHLINDFT+K
Sbjct: 183 KAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVK 242
Query: 260 QMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFAQGPLKDAPNLICT 319
QMRQGAFLVN ARGGLVDEKALAQALKEGRIRGAALDVHESEPFSF+QGPLKDAPNLICT
Sbjct: 243 QMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICT 302
Query: 320 PHTAWYSEQASLEMREAAATEIRRAITGRIPESLRNCVNKEFFVTSAPWSVIDQQAIHPE 379
PH AWYSEQAS+EMRE AA EIRRAITGRIP+SL+NCVNK+ + W+ +D +HPE
Sbjct: 303 PHAAWYSEQASIEMREEAAREIRRAITGRIPDSLKNCVNKDHLTAATHWASMDPAVVHPE 362
Query: 380 LNGATYRYPPGIVGVAPGGLPAAMEGIIPGGIPVTHNLPTVAHPSQAPSPNQPTKHGDNR 439
LNGA YRYPPG+VGVAP G+PAA+EGI+P + ++H LP VAHP APSP Q K +R
Sbjct: 363 LNGAAYRYPPGVVGVAPTGIPAAVEGIVPSAMSLSHGLPPVAHPPHAPSPGQTVKPEADR 422
Query: 440 EHPNEQ 445
+H ++Q
Sbjct: 423 DHASDQ 428
>gi|4557497 C-terminal binding protein 1 isoform 1 [Homo sapiens]
Length = 440
Score = 725 bits (1871), Expect = 0.0
Identities = 345/426 (80%), Positives = 388/426 (91%)
Query: 20 GIRPQIMNGPLHPRPLVALLDGRDCTVEMPILKDLATVAFCDAQSTQEIHEKVLNEAVGA 79
G+RP IMNGPLHPRPLVALLDGRDCTVEMPILKD+ATVAFCDAQSTQEIHEKVLNEAVGA
Sbjct: 14 GVRPPIMNGPLHPRPLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGA 73
Query: 80 MMYHTITLTREDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTI 139
+MYHTITLTREDLEKFKALR+IVRIGSG+DN+DIK+AG+LGIAVCN+P+A+VEETADST+
Sbjct: 74 LMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTL 133
Query: 140 CHILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRA 199
CHILNLYRR TWL+QALREGTRVQSVEQIREVASGAARIRGETLG+IG GR GQAVA+RA
Sbjct: 134 CHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRA 193
Query: 200 KAFGFSVIFYDPYLQDGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIK 259
KAFGF+V+FYDPYL DG+ER+LG+QRV TLQDLL+ SDCV+LHC LNEHNHHLINDFT+K
Sbjct: 194 KAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVK 253
Query: 260 QMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFAQGPLKDAPNLICT 319
QMRQGAFLVN ARGGLVDEKALAQALKEGRIRGAALDVHESEPFSF+QGPLKDAPNLICT
Sbjct: 254 QMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICT 313
Query: 320 PHTAWYSEQASLEMREAAATEIRRAITGRIPESLRNCVNKEFFVTSAPWSVIDQQAIHPE 379
PH AWYSEQAS+EMRE AA EIRRAITGRIP+SL+NCVNK+ + W+ +D +HPE
Sbjct: 314 PHAAWYSEQASIEMREEAAREIRRAITGRIPDSLKNCVNKDHLTAATHWASMDPAVVHPE 373
Query: 380 LNGATYRYPPGIVGVAPGGLPAAMEGIIPGGIPVTHNLPTVAHPSQAPSPNQPTKHGDNR 439
LNGA YRYPPG+VGVAP G+PAA+EGI+P + ++H LP VAHP APSP Q K +R
Sbjct: 374 LNGAAYRYPPGVVGVAPTGIPAAVEGIVPSAMSLSHGLPPVAHPPHAPSPGQTVKPEADR 433
Query: 440 EHPNEQ 445
+H ++Q
Sbjct: 434 DHASDQ 439
>gi|23308577 phosphoglycerate dehydrogenase [Homo sapiens]
Length = 533
Score = 138 bits (347), Expect = 1e-32
Identities = 97/301 (32%), Positives = 153/301 (50%), Gaps = 18/301 (5%)
Query: 73 LNEAVGAMMYHTITLTREDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVE 132
L + G ++ +T + + + L+V+ R G+G DNVD++AA GI V N P+
Sbjct: 45 LQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSL 104
Query: 133 ETADSTICHILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTG 192
A+ T I+ L R+ ++++G + R+ G + G+TLG++G GR G
Sbjct: 105 SAAELTCGMIMCLARQIPQATASMKDG------KWERKKFMGT-ELNGKTLGILGLGRIG 157
Query: 193 QAVAVRAKAFGFSVIFYDPYLQDGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHL 252
+ VA R ++FG I YDP + + S GVQ++ L+++ D +++H L L
Sbjct: 158 REVATRMQSFGMKTIGYDPIISPEVSASFGVQQL-PLEEIWPLCDFITVHTPLLPSTTGL 216
Query: 253 INDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFAQGPLKD 312
+ND T Q ++G +VN ARGG+VDE AL +AL+ G+ GAALDV EP L D
Sbjct: 217 LNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP--PRDRALVD 274
Query: 313 APNLICTPHTAWYSEQASLEMREAAATEIRRAITGRIPESLRNCVNKE-----FFVTSAP 367
N+I PH +++A E A + + G+ SL VN + F + P
Sbjct: 275 HENVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGK---SLTGVVNAQALTSAFSPHTKP 331
Query: 368 W 368
W
Sbjct: 332 W 332
>gi|6912396 glyoxylate reductase/hydroxypyruvate reductase [Homo
sapiens]
Length = 328
Score = 85.9 bits (211), Expect = 7e-17
Identities = 70/258 (27%), Positives = 112/258 (43%), Gaps = 6/258 (2%)
Query: 98 LRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTICHILNLYRRNTWLYQALR 157
L+VI + G D++ + + GI V P + TA+ + +L RR + ++
Sbjct: 75 LKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVK 134
Query: 158 EGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVIFYDPYLQDGI 217
G S + + G + T+G+IG GR GQA+A R K FG Y
Sbjct: 135 NGGWT-SWKPLWLCGYGLTQ---STVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPE 190
Query: 218 ERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVD 277
E + + +L QSD + + C+L L N ++M++ A +N +RG +V+
Sbjct: 191 EAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVN 250
Query: 278 EKALAQALKEGRIRGAALDVHESEPFSFAQGPLKDAPNLICTPHTAWYSEQASLEMREAA 337
+ L QAL G+I A LDV EP PL N + PH + + M A
Sbjct: 251 QDDLYQALASGKIAAAGLDVTSPEPLP-TNHPLLTLKNCVILPHIGSATHRTRNTMSLLA 309
Query: 338 ATEIRRAITGR-IPESLR 354
A + + G +P L+
Sbjct: 310 ANNLLAGLRGEPMPSELK 327
>gi|23957680 ral guanine nucleotide dissociation stimulator-like 4
[Homo sapiens]
Length = 473
Score = 33.9 bits (76), Expect = 0.31
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 375 AIHPELNGATYRYPPGIVGVAPGGLPAAMEGIIPGGIPVTHNLPTVAHPSQAPSPNQPTK 434
A+ PE A PPG + APG PA EG PG + + P + P + NQP++
Sbjct: 153 ALEPESPAALG--PPGYLHSAPGPAPAPGEGPPPGTVLEPQSAPESSCPCRGSVKNQPSE 210
>gi|239753975 PREDICTED: hypothetical protein [Homo sapiens]
Length = 389
Score = 33.1 bits (74), Expect = 0.52
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
Query: 362 FVTSAPWSVID------QQAIHPELNGATYRYPPGIVGVAPGGLPAAMEGIIPGGIPVTH 415
F +SAPW + A P A R PP V P E + PG +P
Sbjct: 90 FWSSAPWRELTLPVSPADPAAPPSSPHAPTRPPPQAVQPRPSEPTPGSEALPPGSLPEGE 149
Query: 416 NLPTVAHPSQAPSPNQPTKHGD 437
P P ++P+P +P + GD
Sbjct: 150 PRPYALPPRESPAP-RPFRWGD 170
>gi|238624188 diffuse panbronchiolitis critical region 1 protein
[Homo sapiens]
Length = 1393
Score = 32.3 bits (72), Expect = 0.89
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 400 PAAMEGIIPGGIPVTHNLPTVAHPSQAPSPNQPTKHGDNREHPNEQ 445
P A E P T N A+ PSP +PT++GD NE+
Sbjct: 527 PLANENTTPSPAEPTENRERTANEKTTPSPAEPTENGDRTPLANEK 572
Score = 29.6 bits (65), Expect = 5.8
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 402 AMEGIIPGGIPVTHNLPTVAHPSQAPSPNQPTKHGDNREHPNEQ 445
A E P T N A+ + PSP QPT++GD NE+
Sbjct: 729 ANEKTTPFPAEPTENRERTANENTTPSPAQPTENGDRTPLANEK 772
Score = 28.9 bits (63), Expect = 9.9
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 398 GLPAAMEGIIPGGIPVTHNLPTVAHPSQAPSPNQPTKHGDNREHPNEQ 445
G A E P T + A+ + PSP +PT+HG+ N++
Sbjct: 365 GERTANENTTPSPAEPTEHGERTANENTTPSPAEPTEHGERTPFANDK 412
Score = 28.9 bits (63), Expect = 9.9
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 400 PAAMEGIIPGGIPVTHN--LPTVAHPSQAPSPNQPTKHGDNREHPNEQ 445
P+A E IP T + + A+ + PSP +PT+HG+ NE+
Sbjct: 1028 PSANEKTIPSPAKPTEHEEMTPSANENTTPSPVKPTEHGEKTTLANEK 1075
>gi|239740773 PREDICTED: similar to diffuse panbronchiolitis
critical region 1 [Homo sapiens]
Length = 1400
Score = 32.3 bits (72), Expect = 0.89
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 400 PAAMEGIIPGGIPVTHNLPTVAHPSQAPSPNQPTKHGDNREHPNEQ 445
P A E P T N A+ PSP +PT++GD NE+
Sbjct: 589 PLANENTTPSPAEPTENRERTANEKTTPSPAEPTENGDRTPLANEK 634
Score = 29.6 bits (65), Expect = 5.8
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 402 AMEGIIPGGIPVTHNLPTVAHPSQAPSPNQPTKHGDNREHPNEQ 445
A E P T N A+ + PSP QPT++GD NE+
Sbjct: 791 ANEKTTPFPAEPTENRERTANENTTPSPAQPTENGDRTPLANEK 834
Score = 28.9 bits (63), Expect = 9.9
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 398 GLPAAMEGIIPGGIPVTHNLPTVAHPSQAPSPNQPTKHGDNREHPNEQ 445
G A E P T + A+ + PSP +PT+HG+ N++
Sbjct: 427 GERTANENTTPSPAEPTEHGERTANENTTPSPAEPTEHGERTPFANDK 474
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 31.6 bits (70), Expect = 1.5
Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 16/73 (21%)
Query: 387 YPPGIVGVAPGGLPAAMEGIIP---------------GGIPVTHNLPTVAHPSQAPSPNQ 431
+ PG G P PA+ +G P G +P H+ P H AP P Q
Sbjct: 954 FNPGSGGPLPASSPASFDGPSPPDTRVGSREKSLYHSGPLPPAHHHPPHHHHHHAPPP-Q 1012
Query: 432 PTKHGDNREHPNE 444
P H + HP E
Sbjct: 1013 PHHHHAHPPHPPE 1025
>gi|198041703 solute carrier family 22 (organic cation transporter),
member 18 antisense [Homo sapiens]
Length = 253
Score = 30.8 bits (68), Expect = 2.6
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 125 NIPSAAVEETADSTICHI-LNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGETL 183
N P V++ A T+ + L R+ WL+ + + Q + + RE R+RG L
Sbjct: 13 NCPLGWVKKKASGTLAPLDFLLQRKRLWLWASEPVRPQPQGIHRFREARRQFCRMRGSRL 72
Query: 184 --GLIGFGRTG 192
G GFG +G
Sbjct: 73 TGGRKGFGSSG 83
>gi|195972857 Rho/Rac guanine nucleotide exchange factor 18 isoform
b [Homo sapiens]
Length = 1173
Score = 30.4 bits (67), Expect = 3.4
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 210 DPYLQDGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVN 269
DP L +E L VQR+ TL LL V H + ++ Q R+ F +
Sbjct: 789 DPRLPTVLESEL-VQRIQTLSQLLLNLQAVIAH-----QDSYVETQRAAIQEREKQFRLQ 842
Query: 270 AARGGLVDEKALAQALKEGRIRGAALDVHESE 301
+ RG L+ E+ + ++ R AAL+ +S+
Sbjct: 843 STRGNLLLEQERQRNFEKQREERAALEKLQSQ 874
>gi|41327769 Rho/Rac guanine nucleotide exchange factor 18 isoform a
[Homo sapiens]
Length = 1015
Score = 30.4 bits (67), Expect = 3.4
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 210 DPYLQDGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVN 269
DP L +E L VQR+ TL LL V H + ++ Q R+ F +
Sbjct: 631 DPRLPTVLESEL-VQRIQTLSQLLLNLQAVIAH-----QDSYVETQRAAIQEREKQFRLQ 684
Query: 270 AARGGLVDEKALAQALKEGRIRGAALDVHESE 301
+ RG L+ E+ + ++ R AAL+ +S+
Sbjct: 685 STRGNLLLEQERQRNFEKQREERAALEKLQSQ 716
>gi|4759156 small nuclear ribonucleoprotein polypeptide A [Homo
sapiens]
Length = 282
Score = 30.4 bits (67), Expect = 3.4
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 10/51 (19%)
Query: 385 YRYPPGIV---GVAPGGLPAAMEGIIPGGIPVTHNLPTVAHPSQAPSPNQP 432
Y PPG++ G+APG +P PG +P +P P+Q S N P
Sbjct: 163 YMPPPGMIPPPGLAPGQIP-------PGAMPPQQLMPGQMPPAQPLSENPP 206
>gi|46049063 exportin 6 [Homo sapiens]
Length = 1125
Score = 30.4 bits (67), Expect = 3.4
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 8/50 (16%)
Query: 204 FSVIFYDPYLQDGIERSLGVQRVYTLQ------DLLYQSDCVSLHCNLNE 247
FS +F P LQD +E LG+Q+ ++ ++DC LHC+L +
Sbjct: 509 FSTLF--PVLQDNLEVYLGLQQFIVTSGSGHRLNITAENDCRRLHCSLRD 556
>gi|157502173 hypothetical protein LOC348487 [Homo sapiens]
Length = 280
Score = 30.0 bits (66), Expect = 4.4
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 19/96 (19%)
Query: 349 IPESLRNC-----VNKEFFVTSAP---WSVIDQQAIHPELNGATYRYPPGIVGVAPGGLP 400
+P+ LR V ++F +T A WS +D++ +HPE P GIV +
Sbjct: 139 LPDELREARFAAGVAEQFAITEATLSAWSSLDEEELHPE------NSPQGIVQLQDLE-S 191
Query: 401 AAMEGIIPGGIPVTHNLPTVAHPS----QAPSPNQP 432
++ +P G +L + PS PSP +P
Sbjct: 192 IYLQDSLPSGPSQDDSLQAFSSPSPSPDSCPSPEEP 227
>gi|50345831 forkhead box J3 [Homo sapiens]
Length = 622
Score = 30.0 bits (66), Expect = 4.4
Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 9/82 (10%)
Query: 364 TSAPWSVIDQQAIHPELNGATYRYPPGIVGVAPGGLPAAMEGIIPGGIPVTHNLPTVAHP 423
T+ SV HP+++ +PP P GLP P P P
Sbjct: 359 TTGSNSVAQVSLSHPQMHTQPSPHPPH----RPHGLPQH-----PQRSPHPAPHPQQHSQ 409
Query: 424 SQAPSPNQPTKHGDNREHPNEQ 445
Q+P P P+ H + HPN Q
Sbjct: 410 LQSPHPQHPSPHQHIQHHPNHQ 431
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 29.6 bits (65), Expect = 5.8
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 393 GVAPGGLPAAMEGIIPGGIPVTHNLPTVAHPSQAPSPNQPTKHGDNREHPNEQ 445
GV +P ++ G++ + + + A P+ PSP +P + HP Q
Sbjct: 11617 GVPTTTIPPSIPGVVTSQVTSSATDTSTAIPTLTPSPGEPETTASSATHPGTQ 11669
>gi|239741018 PREDICTED: hypothetical protein XP_002342056 [Homo
sapiens]
Length = 566
Score = 29.6 bits (65), Expect = 5.8
Identities = 34/100 (34%), Positives = 44/100 (44%), Gaps = 17/100 (17%)
Query: 248 HNHHLINDFTIKQ---MRQGAFLVNAARGGLVDEKALAQA----LKEGRIRGAALDVHES 300
H H L+ D + Q G L A E A A+ LK+G + GAA D+
Sbjct: 307 HWHLLLADILMAQGSYEEAGTHLEKALHRAPTSEAARARLGLLQLKKGDVPGAARDLQ-- 364
Query: 301 EPFSFAQGPLKDAPNLICTPHTAWYSEQASLEMREAAATE 340
S A+ DAP+L C H SE+ SL +AAA E
Sbjct: 365 ---SLAE---VDAPDLSCLLHLLEASERQSL--AQAAAQE 396
>gi|19923597 Sin3A-associated protein, 130kDa isoform b [Homo
sapiens]
Length = 1048
Score = 29.6 bits (65), Expect = 5.8
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 375 AIHPELNGATYRYPPGIVGVAPGGLPAAMEGIIPGGIPVTHNLPTVAHPSQAPSPN 430
A+ P P I +P PA IPG +P+T + T+A AP P+
Sbjct: 712 AVPPTAQQPPPTIPTMIAAASPPSQPAVALSTIPGAVPITPPITTIA---AAPPPS 764
>gi|225579127 Sin3A-associated protein, 130kDa isoform a [Homo
sapiens]
Length = 1083
Score = 29.6 bits (65), Expect = 5.8
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 375 AIHPELNGATYRYPPGIVGVAPGGLPAAMEGIIPGGIPVTHNLPTVAHPSQAPSPN 430
A+ P P I +P PA IPG +P+T + T+A AP P+
Sbjct: 747 AVPPTAQQPPPTIPTMIAAASPPSQPAVALSTIPGAVPITPPITTIA---AAPPPS 799
>gi|116292174 fidgetin-like 2 [Homo sapiens]
Length = 653
Score = 29.6 bits (65), Expect = 5.8
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Query: 385 YRYPPGIVGVAPG--GLPAAMEGIIPGGIPVTHNLPTVAHPSQAPSPNQPTKHG 436
Y YP G PG LP PG P + P + P+ P+P PT +G
Sbjct: 203 YNYPAGGYAAQPGYGALPPP-----PGPPPAPYLTPGLPAPTPLPAPAPPTAYG 251
>gi|64084766 fidgetin [Homo sapiens]
Length = 759
Score = 29.6 bits (65), Expect = 5.8
Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 387 YPPGIV---GVAPGGLPAAMEGIIPGGIPVTHNLPTVAHP 423
YPP G +PGG P +P GIP LP P
Sbjct: 252 YPPQTAVGSGYSPGGAPPPPSAYLPSGIPAPTPLPPTTVP 291
>gi|31543535 R3H domain containing 1 [Homo sapiens]
Length = 1099
Score = 29.6 bits (65), Expect = 5.8
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 388 PPGIVGVAPGGLPAAMEGIIPGGIPVTHNLPTVAHP--SQAPSPNQP 432
PPG + + P I P G PV +N P P SQ P P QP
Sbjct: 481 PPGSILINP---QTGQPFINPDGSPVVYNPPMTQQPVRSQVPGPPQP 524
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 29.6 bits (65), Expect = 5.8
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Query: 378 PELNGATYRYPPGIVGVA--PG-----GLPAAM-EGIIPG--GIPVTHNLPTVAHPSQAP 427
P + G + PPG G PG G P M E +PG G+P P VA P
Sbjct: 694 PGIPGIGFPGPPGPKGDQGFPGTKGSLGCPGKMGEPGLPGKPGLPGAKGEPAVAMPGGPG 753
Query: 428 SPNQPTKHGDNREH 441
+P P + G++ EH
Sbjct: 754 TPGFPGERGNSGEH 767
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 29.6 bits (65), Expect = 5.8
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Query: 378 PELNGATYRYPPGIVGVA--PG-----GLPAAM-EGIIPG--GIPVTHNLPTVAHPSQAP 427
P + G + PPG G PG G P M E +PG G+P P VA P
Sbjct: 694 PGIPGIGFPGPPGPKGDQGFPGTKGSLGCPGKMGEPGLPGKPGLPGAKGEPAVAMPGGPG 753
Query: 428 SPNQPTKHGDNREH 441
+P P + G++ EH
Sbjct: 754 TPGFPGERGNSGEH 767
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 29.6 bits (65), Expect = 5.8
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Query: 378 PELNGATYRYPPGIVGVA--PG-----GLPAAM-EGIIPG--GIPVTHNLPTVAHPSQAP 427
P + G + PPG G PG G P M E +PG G+P P VA P
Sbjct: 694 PGIPGIGFPGPPGPKGDQGFPGTKGSLGCPGKMGEPGLPGKPGLPGAKGEPAVAMPGGPG 753
Query: 428 SPNQPTKHGDNREH 441
+P P + G++ EH
Sbjct: 754 TPGFPGERGNSGEH 767
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 29.6 bits (65), Expect = 5.8
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Query: 378 PELNGATYRYPPGIVGVA--PG-----GLPAAM-EGIIPG--GIPVTHNLPTVAHPSQAP 427
P + G + PPG G PG G P M E +PG G+P P VA P
Sbjct: 694 PGIPGIGFPGPPGPKGDQGFPGTKGSLGCPGKMGEPGLPGKPGLPGAKGEPAVAMPGGPG 753
Query: 428 SPNQPTKHGDNREH 441
+P P + G++ EH
Sbjct: 754 TPGFPGERGNSGEH 767
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,121,987
Number of Sequences: 37866
Number of extensions: 805984
Number of successful extensions: 2466
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 2393
Number of HSP's gapped (non-prelim): 86
length of query: 445
length of database: 18,247,518
effective HSP length: 105
effective length of query: 340
effective length of database: 14,271,588
effective search space: 4852339920
effective search space used: 4852339920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.