Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 4557493
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens]
(577 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens] 1161 0.0
gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2, ... 827 0.0
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 89 1e-17
gi|118600973 RNA binding motif protein, X-linked 2 [Homo sapiens] 75 1e-13
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 70 5e-12
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 69 1e-11
gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens] 69 2e-11
gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens] 69 2e-11
gi|70780381 bruno-like 6, RNA binding protein [Homo sapiens] 67 3e-11
gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Ho... 67 6e-11
gi|5803137 RNA binding motif protein 3 [Homo sapiens] 66 8e-11
gi|18201888 poly(A) binding protein, cytoplasmic 5 [Homo sapiens] 66 1e-10
gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Ho... 65 1e-10
gi|60279268 U2 (RNU2) small nuclear RNA auxiliary factor 2 isofo... 65 2e-10
gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo s... 65 2e-10
gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo sapi... 64 3e-10
gi|116734698 RNA binding motif protein 23 isoform 3 [Homo sapiens] 64 3e-10
gi|116734696 RNA binding motif protein 23 isoform 1 [Homo sapiens] 64 3e-10
gi|116734694 RNA binding motif protein 23 isoform 2 [Homo sapiens] 64 3e-10
gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo... 64 3e-10
gi|6005926 U2 (RNU2) small nuclear RNA auxiliary factor 2 isofor... 64 4e-10
gi|4502847 cold inducible RNA binding protein [Homo sapiens] 64 5e-10
gi|238859597 RNA binding motif protein 34 isoform 1 [Homo sapiens] 63 6e-10
gi|226497734 RNA binding motif protein 19 [Homo sapiens] 63 8e-10
gi|226497654 RNA binding motif protein 19 [Homo sapiens] 63 8e-10
gi|226497574 RNA binding motif protein 19 [Homo sapiens] 63 8e-10
gi|4826972 RNA binding motif protein 8A [Homo sapiens] 62 1e-09
gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens] 62 1e-09
gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens] 62 2e-09
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 61 3e-09
>gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens]
Length = 577
Score = 1161 bits (3003), Expect = 0.0
Identities = 577/577 (100%), Positives = 577/577 (100%)
Query: 1 MAGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYG 60
MAGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYG
Sbjct: 1 MAGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYG 60
Query: 61 FCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIESPYGETIS 120
FCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIESPYGETIS
Sbjct: 61 FCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIESPYGETIS 120
Query: 121 PEDAPESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMR 180
PEDAPESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMR
Sbjct: 121 PEDAPESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMR 180
Query: 181 IVDPEIALKILHRQTNIPTLIAGNPQPVHGAGPGSGSNVSMNQQNPQAPQAQSLGGMHVN 240
IVDPEIALKILHRQTNIPTLIAGNPQPVHGAGPGSGSNVSMNQQNPQAPQAQSLGGMHVN
Sbjct: 181 IVDPEIALKILHRQTNIPTLIAGNPQPVHGAGPGSGSNVSMNQQNPQAPQAQSLGGMHVN 240
Query: 241 GAPPLMQASMQGGVPAPGQMPAAVTGPGPGSLAPGGGMQAQVGMPGSGPVSMERGQVPMQ 300
GAPPLMQASMQGGVPAPGQMPAAVTGPGPGSLAPGGGMQAQVGMPGSGPVSMERGQVPMQ
Sbjct: 241 GAPPLMQASMQGGVPAPGQMPAAVTGPGPGSLAPGGGMQAQVGMPGSGPVSMERGQVPMQ 300
Query: 301 DPRAAMQRGSLPANVPTPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPHQGPPMHHVP 360
DPRAAMQRGSLPANVPTPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPHQGPPMHHVP
Sbjct: 301 DPRAAMQRGSLPANVPTPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPHQGPPMHHVP 360
Query: 361 GHESRGPPPHELRGGPLPEPRPLMAEPRGPMLDQRGPPLDGRGGRDPRGIDARGMEARAM 420
GHESRGPPPHELRGGPLPEPRPLMAEPRGPMLDQRGPPLDGRGGRDPRGIDARGMEARAM
Sbjct: 361 GHESRGPPPHELRGGPLPEPRPLMAEPRGPMLDQRGPPLDGRGGRDPRGIDARGMEARAM 420
Query: 421 EARGLDARGLEARAMEARAMEARAMEARAMEARAMEVRGMEARGMDTRGPVPGPRGPIPS 480
EARGLDARGLEARAMEARAMEARAMEARAMEARAMEVRGMEARGMDTRGPVPGPRGPIPS
Sbjct: 421 EARGLDARGLEARAMEARAMEARAMEARAMEARAMEVRGMEARGMDTRGPVPGPRGPIPS 480
Query: 481 GMQGPSPINMGAVVPQGSRQVPVMQGTGMQGASIQGGSQPGGFSPGQNQVTPQDHEKAAL 540
GMQGPSPINMGAVVPQGSRQVPVMQGTGMQGASIQGGSQPGGFSPGQNQVTPQDHEKAAL
Sbjct: 481 GMQGPSPINMGAVVPQGSRQVPVMQGTGMQGASIQGGSQPGGFSPGQNQVTPQDHEKAAL 540
Query: 541 IMQVLQLTADQIAMLPPEQRQSILILKEQIQKSTGAP 577
IMQVLQLTADQIAMLPPEQRQSILILKEQIQKSTGAP
Sbjct: 541 IMQVLQLTADQIAMLPPEQRQSILILKEQIQKSTGAP 577
>gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2,
64kDa, tau variant [Homo sapiens]
Length = 616
Score = 827 bits (2135), Expect = 0.0
Identities = 437/630 (69%), Positives = 475/630 (75%), Gaps = 69/630 (10%)
Query: 1 MAGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYG 60
M+ L VRDPA+DRSLRSVFVGNIPYEATEEQLKDIFSEVG VVSFRLVYDRETGKPKGYG
Sbjct: 1 MSSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYG 60
Query: 61 FCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIESPYGETIS 120
FCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLG AP+I+SPYG+ I
Sbjct: 61 FCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAAPIIDSPYGDPID 120
Query: 121 PEDAPESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMR 180
PEDAPESI++AVASLPPEQMFELMKQMKLCVQNS QEARNMLLQNPQLAYALLQAQVVMR
Sbjct: 121 PEDAPESITRAVASLPPEQMFELMKQMKLCVQNSHQEARNMLLQNPQLAYALLQAQVVMR 180
Query: 181 IVDPEIALKILHRQTNIPTLIAGNPQPVHGAGPG--------SGSNVSMNQQNPQAPQAQ 232
I+DPEIALKILHR+ ++ LI G Q V +GPG G NV +NQQNP APQ Q
Sbjct: 181 IMDPEIALKILHRKIHVTPLIPGKSQSVSVSGPGPGPGPGLCPGPNVLLNQQNPPAPQPQ 240
Query: 233 SLGGMHVNGAPPLMQASMQGGVPAPGQMPAAVTGPGPGSLAPGGGMQAQVGMPGSGPVSM 292
L V PPLMQ +QGG+PAPG +PAAV G GPGSL PGG MQ Q+GMPG GPV +
Sbjct: 241 HLARRPVKDIPPLMQTPIQGGIPAPGPIPAAVPGAGPGSLTPGGAMQPQLGMPGVGPVPL 300
Query: 293 ERGQVPMQDPRAAMQRGSLPANVPTPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPHQ 352
ERGQV M DPRA + RG + PRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPHQ
Sbjct: 301 ERGQVQMSDPRAPIPRGPVTPGGLPPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPHQ 360
Query: 353 GPPMHHVPGHESRGPPPHELRGGPLPEPRPLMAEPRGPMLDQRGPPLDGRGGRDPRGIDA 412
GPPMHH GH++RGP HE+RGGPL +PR L+ EPRGPM+DQRG P+DGRGGRD
Sbjct: 361 GPPMHHASGHDTRGPSSHEMRGGPLGDPRLLIGEPRGPMIDQRGLPMDGRGGRD------ 414
Query: 413 RGMEARAMEARGLDARGLEARAMEARAMEARAMEARAMEARAMEVRGMEARGMDTRGPVP 472
+RAME R ++ LE R ME R ME AME R MEA RGM+ARG++ RGPVP
Sbjct: 415 ----SRAMETRAMETEVLETRVMERRGMETCAMETRGMEA-----RGMDARGLEMRGPVP 465
Query: 473 GPRGPIPSGMQGPSPINMGA-VVPQGSRQVP---------------VMQGTGMQGASI-- 514
RGP+ G+QGP PIN+GA PQG RQVP +QGTGMQGA I
Sbjct: 466 SSRGPMTGGIQGPGPINIGAGGPPQGPRQVPGISGVGNPGAGMQGTGIQGTGMQGAGIQG 525
Query: 515 ----------------------------QGGSQPGGFSPGQNQVTPQDHEKAALIMQVLQ 546
QGGSQP FSPGQ+QVTPQD EKAALIMQVLQ
Sbjct: 526 GGMQGAGIQGVSIQGGGIQGGGIQGASKQGGSQPSSFSPGQSQVTPQDQEKAALIMQVLQ 585
Query: 547 LTADQIAMLPPEQRQSILILKEQIQKSTGA 576
LTADQIAMLPPEQRQSILILKEQIQKSTGA
Sbjct: 586 LTADQIAMLPPEQRQSILILKEQIQKSTGA 615
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 89.0 bits (219), Expect = 1e-17
Identities = 103/394 (26%), Positives = 148/394 (37%), Gaps = 86/394 (21%)
Query: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSF-RLVYDRETGKPKGYGFCEYQDQETALSAMR 75
++F+GN+ E E+ L D FS G ++ +++ D +TG KGY F + + + +A+
Sbjct: 101 NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE 160
Query: 76 NLNGREFSGRALRVDNAASEKNKEEL------KSLGTGAPVIESP-----YGETISPEDA 124
+NG+ R + V A + +K E + L P+ ++ + + P A
Sbjct: 161 AMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSA 220
Query: 125 PESISKAVAS-LPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVD 183
P + ++ S LPP M P ++ V
Sbjct: 221 PNPVVSSLGSGLPPPGM------------------------PPPGSFP--------PPVP 248
Query: 184 PEIALKILHRQTNIPTLIAGNPQPVHGAGPGSGSNVSMNQQNPQAPQAQSLGGMHVNGAP 243
P AL IP + P P AG G S + +P G H + P
Sbjct: 249 PPGALP-----PGIPPAMPPPPMPPGAAGHGPPSAGTPGAGHP------GHGHSHPHPFP 297
Query: 244 PLMQASMQGGVPAPGQMPAAVTGPGPGSLAPGGGMQAQVGMPGSGPVSMERGQVPMQDPR 303
P GG+P PG + GP L G PGSG GQ P + P
Sbjct: 298 P-------GGMPHPGMSQMQLAHHGPHGLG-----HPHAGPPGSG------GQPPPRPPP 339
Query: 304 AAMQRGSLPANVPTPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPHQGPPMHHVPGHE 363
G P +P PRG P G+ + G + P G GPP PP H G
Sbjct: 340 GMPHPGPPPMGMP-PRG--------PPFGSPMGHPGPMPPHGMRGPPPLMPP-HGYTGPP 389
Query: 364 SRGPPPHELRGGPLPEPRPLMAEPRGPMLDQRGP 397
PPP+ + GPLP PRP P P RGP
Sbjct: 390 R--PPPYGYQRGPLPPPRPTPRPPVPPRGPLRGP 421
Score = 39.3 bits (90), Expect = 0.010
Identities = 49/178 (27%), Positives = 56/178 (31%), Gaps = 12/178 (6%)
Query: 318 PRGLLGDAPNDPRG-GTLLSVTGEVEPRGYLGPPHQGPPMHHVPGHESRGPPPHELRGGP 376
P L DAP P ++S G P + PP PP PG G PP
Sbjct: 207 PHQLFADAPPPPSAPNPVVSSLGSGLPPPGMPPPGSFPPPVPPPGALPPGIPP-----AM 261
Query: 377 LPEPRPLMAEPRGP-MLDQRGPPLDGRGGRDPRGIDARGMEARAMEARGLDARGLEARAM 435
P P P A GP G G G P GM M L G
Sbjct: 262 PPPPMPPGAAGHGPPSAGTPGAGHPGHGHSHPHPFPPGGMPHPGMSQMQLAHHGPHGLGH 321
Query: 436 EARAMEARAMEARAMEARAMEVRGMEARGMDTRGPV----PGPRGPIPS-GMQGPSPI 488
+ M G GM RGP G GP+P GM+GP P+
Sbjct: 322 PHAGPPGSGGQPPPRPPPGMPHPGPPPMGMPPRGPPFGSPMGHPGPMPPHGMRGPPPL 379
>gi|118600973 RNA binding motif protein, X-linked 2 [Homo sapiens]
Length = 322
Score = 75.5 bits (184), Expect = 1e-13
Identities = 36/87 (41%), Positives = 56/87 (64%), Gaps = 3/87 (3%)
Query: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
+F+G +PYE TE + +FS+ G +V+ LV D++TGK KG+ F Y+DQ + + A+ N
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97
Query: 78 NGREFSGRALRVD---NAASEKNKEEL 101
NG + GR +RVD N + K+ EE+
Sbjct: 98 NGIKIKGRTIRVDHVSNYRAPKDSEEI 124
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 70.1 bits (170), Expect = 5e-12
Identities = 99/366 (27%), Positives = 131/366 (35%), Gaps = 45/366 (12%)
Query: 194 QTNIPTLIAGNPQPVHGAGPGSGSNVSMNQQNPQAPQAQSLGGMHVNGAPPLMQASMQGG 253
Q P+LIAGNPQ GA P G+ P PQ G + PP QG
Sbjct: 25 QEESPSLIAGNPQ---GAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGP 81
Query: 254 VPAPGQMPAAVTGPGPGSLAPGGGMQAQV-----GMP-GSGPVSMERGQVPMQDPRAAM- 306
P G P PG P G +++ G P G P + Q P P
Sbjct: 82 PPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQG 141
Query: 307 ---QRGSLPANVPTPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPHQG-------PPM 356
Q G+ P P P G P G S + P GPP QG PP
Sbjct: 142 PPPQGGNKPQGPPPP----GKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPP 197
Query: 357 HHVP-------GHESRGPPPHELRGGPLPEPRPLMAEPRGPMLDQRGPPLDGRGGRDPRG 409
P G++ +GPPP GP P+ R P +GPP +GG P+G
Sbjct: 198 PGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPP--PQGGNQPQG 255
Query: 410 IDARGMEARAMEARGLDA-RGLEARAMEARAMEARAMEARAMEARAMEVRGMEARGMDT- 467
+ + +G + +G ++R+ + + +G +G +
Sbjct: 256 PPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQP 315
Query: 468 RGPVPGPRGPIPSGMQGPSPINMGAVVPQGSRQVPVMQGTGMQGASIQGGSQPGGFSPGQ 527
+GP P P P QGP P G PQG QG QG S S+ PG+
Sbjct: 316 QGPPPPPGKP-----QGPPP--QGGNKPQGPPPPGKPQGPPPQGGS---KSRSARSPPGK 365
Query: 528 NQVTPQ 533
Q PQ
Sbjct: 366 PQGPPQ 371
Score = 52.8 bits (125), Expect = 9e-07
Identities = 67/236 (28%), Positives = 86/236 (36%), Gaps = 37/236 (15%)
Query: 203 GNPQPVHGAGPG-SGSNVSMNQQNP----QAPQAQSLGGMHVNGAPPLMQASMQGGVPAP 257
G P P GP G N S + ++P Q P Q GG G PP QG P
Sbjct: 152 GPPPPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQ--GGNQPQGPPP-PPGKPQGPPPQG 208
Query: 258 GQMPAAVTGPG-PGSLAPGGGMQAQV---------GMPGSGPVSMERGQVPMQDPRAAMQ 307
G P PG P P G ++Q G P G + P P+
Sbjct: 209 GNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPP 268
Query: 308 RGSLPANVPTPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPHQG-------PPMHHVP 360
+G P P G P P+GG+ S + P GPP QG PP P
Sbjct: 269 QGGNKPQGPPPPGKPQGPP--PQGGSK-SRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKP 325
Query: 361 -------GHESRGPPPHELRGGPLPEPRPLMAEPRGPMLDQRGPPLDGRGGRDPRG 409
G++ +GPPP GP P+ R P +GPP + G +P+G
Sbjct: 326 QGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPP--QQEGNNPQG 379
Score = 51.6 bits (122), Expect = 2e-06
Identities = 68/227 (29%), Positives = 84/227 (37%), Gaps = 48/227 (21%)
Query: 203 GNPQPVHGAGPG-SGSNVSMNQQNP----QAPQAQSLGGMHVNGAPPLMQASMQGGVPAP 257
G P P GP G N S + ++P Q P Q GG G PP QG P
Sbjct: 214 GPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQ--GGNQPQGPPP-PPGKPQGPPPQG 270
Query: 258 GQMPAAVTGPG-PGSLAPGGGMQAQVGMPGSGPVSMERGQVPMQDPRAAMQRGSLPANVP 316
G P PG P P GG +++ P +G P Q G+ P P
Sbjct: 271 GNKPQGPPPPGKPQGPPPQGGSKSR---SSRSPPGKPQGPPP--------QGGNQPQGPP 319
Query: 317 TPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPHQGPPMHHVP--GHESR--------- 365
P G P P+GG +P+G PP G P P G +SR
Sbjct: 320 PPPGKPQGPP--PQGGN--------KPQG---PPPPGKPQGPPPQGGSKSRSARSPPGKP 366
Query: 366 -GPPPHELRG--GPLPEPRPLMAEPRGPMLDQ-RGPPLDGRGGRDPR 408
GPP E GP P +P+ P Q +GPP +GGR R
Sbjct: 367 QGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQGGRPSR 413
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 68.9 bits (167), Expect = 1e-11
Identities = 93/349 (26%), Positives = 123/349 (35%), Gaps = 73/349 (20%)
Query: 194 QTNIPTLIAGNPQPVHGAGPGSGSNVSMNQQNPQAPQAQSLGGMHVNGAPPLMQASMQGG 253
Q P+LIAGNPQ G PQ P Q GG G PP QG
Sbjct: 25 QEESPSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGPPPQ--GGNKPQGPPP--PGKPQGP 80
Query: 254 VPAPGQMPAAVTGPG-PGSLAPGGGMQAQVGMPGSGPVSMERGQVPMQDPRAAMQRGSLP 312
P + + + PG P P GG Q Q P P +G P Q G+ P
Sbjct: 81 PPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPP---PPGKPQGPPP--------QGGNRP 129
Query: 313 ANVPTPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPHQGPPMHHVPGHESRGPPPHEL 372
P P G P + + S G+ + GPP QG G++ +GPPP
Sbjct: 130 QGPPPPGKPQGPPPQGDKSRSPRSPPGKPQ-----GPPPQG-------GNQPQGPPP--- 174
Query: 373 RGGPLPEPRPLMAEPRGPMLDQRGPPLDGRGGRDPRGIDARGMEARAMEARGLDARGLEA 432
P +P P+G Q PP G P+G +R ++ + +G +G
Sbjct: 175 -----PPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQG--- 226
Query: 433 RAMEARAMEARAMEARAMEARAMEVRGMEARGMDTRGPVP----GPRGPIPSGM-QGP-- 485
+ +G +GP P P+GP P G QGP
Sbjct: 227 ---------------------GNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPA 265
Query: 486 --SPINMGAVVPQGSRQVPVMQGTGMQGASIQGGSQPGGFSPGQNQVTP 532
+ A P G Q P Q +G + QG P G +P Q Q P
Sbjct: 266 QGGSKSQSARSPPGKPQGPPQQ----EGNNPQGPPPPAGGNPQQPQAPP 310
Score = 53.1 bits (126), Expect = 7e-07
Identities = 62/217 (28%), Positives = 75/217 (34%), Gaps = 30/217 (13%)
Query: 203 GNPQPVHGAGPGSGSNVSMNQQNP----QAPQAQSLGGMHVNGAPPLMQASMQGGVPAPG 258
G P P GP + S + ++P Q P Q GG G PP QG P G
Sbjct: 131 GPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQ--GGNQPQGPPP-PPGKPQGPPPQGG 187
Query: 259 QMPAAVTGPGPGSLAPGGGMQAQVGMPGSGPVSMERGQVPMQDPRAAMQRGSLPANVPTP 318
+ P GP P G Q P +G P Q G+ P P P
Sbjct: 188 KKPQ---GPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPP--------QGGNQPQGPPPP 236
Query: 319 RGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPHQGPPMHHV---PGHESRGPPPHELRGG 375
G P P+GG G P GPP QG P + +GPP E
Sbjct: 237 PGKPQGPP--PQGGN--KPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQE-GNN 291
Query: 376 PLPEPRPLMAEPRGPML----DQRGPPLDGRGGRDPR 408
P P P P+ P +GPP +GGR R
Sbjct: 292 PQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQGGRPSR 328
>gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens]
Length = 524
Score = 68.6 bits (166), Expect = 2e-11
Identities = 31/86 (36%), Positives = 49/86 (56%)
Query: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
++VG++ + TE+ L+ IF G + S +L+ D ETG+ KGYGF + D E A A+ L
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311
Query: 78 NGREFSGRALRVDNAASEKNKEELKS 103
NG E +GR ++V + + S
Sbjct: 312 NGFELAGRPMKVGHVTERTDASSASS 337
Score = 42.7 bits (99), Expect = 0.001
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71
+R R+VF + L++ FS VG V R++ DR + + KG + E+ D +
Sbjct: 149 ERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVP 208
Query: 72 SAMRNLNGREFSGRALRVDNAASEKNK 98
A+ L G+ G + V + +EKN+
Sbjct: 209 LAI-GLTGQRVLGVPIIVQASQAEKNR 234
>gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens]
Length = 530
Score = 68.6 bits (166), Expect = 2e-11
Identities = 31/86 (36%), Positives = 49/86 (56%)
Query: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
++VG++ + TE+ L+ IF G + S +L+ D ETG+ KGYGF + D E A A+ L
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311
Query: 78 NGREFSGRALRVDNAASEKNKEELKS 103
NG E +GR ++V + + S
Sbjct: 312 NGFELAGRPMKVGHVTERTDASSASS 337
Score = 42.7 bits (99), Expect = 0.001
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71
+R R+VF + L++ FS VG V R++ DR + + KG + E+ D +
Sbjct: 149 ERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVP 208
Query: 72 SAMRNLNGREFSGRALRVDNAASEKNK 98
A+ L G+ G + V + +EKN+
Sbjct: 209 LAI-GLTGQRVLGVPIIVQASQAEKNR 234
>gi|70780381 bruno-like 6, RNA binding protein [Homo sapiens]
Length = 481
Score = 67.4 bits (163), Expect = 3e-11
Identities = 80/319 (25%), Positives = 123/319 (38%), Gaps = 21/319 (6%)
Query: 9 PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQE 68
P D +FVG IP E+ LK +F E G + ++ DR TG KG F Y ++
Sbjct: 39 PMKDHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARD 98
Query: 69 TALSAMRNLNGREF---SGRALRVDNAASEKNKEELKSLGTGAPVIESPYGETISPEDAP 125
+AL A L+ ++ R ++V AASE E+ K + G+ ED
Sbjct: 99 SALKAQSALHEQKTLPGMNRPIQVKPAASEGRGEDRK-------LFVGMLGKQQGEEDVR 151
Query: 126 E------SISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVM 179
I + P+ + +K Q Q A L + +A A + +V+
Sbjct: 152 RLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIRGLHGSRTMAGA--SSSLVV 209
Query: 180 RIVDPEIALKILHRQTNIPTLIAGNPQPVHGAGPGSGSNVSMNQQNPQAPQAQSLGGMHV 239
++ D + + Q L A +P P+ G+ + + Q AQ G V
Sbjct: 210 KLADTDRERALRRMQQMAGHLGAFHPAPLPLGACGAYTTAILQHQAALLAAAQGPGLGPV 269
Query: 240 NGAPPLMQASMQGGVPAPGQMPAAVTGPGPGSLAPG--GGMQAQVGMPGSGPVSMERGQV 297
MQ + A +PAA PGS PG G+ A +G+ G GP++ +
Sbjct: 270 AAVAAQMQHVAAFSLVAAPLLPAAAANSPPGS-GPGTLPGLPAPIGVNGFGPLTPQTNGQ 328
Query: 298 PMQDPRAAMQRGSLPANVP 316
P D PA P
Sbjct: 329 PGSDTLYNNGLSPYPAQSP 347
Score = 43.5 bits (101), Expect = 5e-04
Identities = 21/73 (28%), Positives = 42/73 (57%)
Query: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
++F+ ++P E + +L F G VVS ++ DR T + K +GF + + +A +A++
Sbjct: 397 NLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQA 456
Query: 77 LNGREFSGRALRV 89
+NG + + L+V
Sbjct: 457 MNGFQIGMKRLKV 469
>gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Homo
sapiens]
Length = 660
Score = 66.6 bits (161), Expect = 6e-11
Identities = 103/433 (23%), Positives = 159/433 (36%), Gaps = 58/433 (13%)
Query: 13 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALS 72
+ +V++ N E +E LK++FS+ G +S +++ D GK KG+GF Y+ E A
Sbjct: 188 KEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANK 246
Query: 73 AMRNLNGREFSGRALRVDNAAS------------EKNKEELKSLGTGAPVIESPYGETIS 120
A+ +NG+E SG+ + V A E+ K+E S G + +TI
Sbjct: 247 AVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 306
Query: 121 PEDAPESISKAVASLPPEQMFE--LMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVV 178
E + S + + M E K +SP+EA + ++
Sbjct: 307 DEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAV------------TEMN 354
Query: 179 MRIVDPEIALKILHRQTNIPTLIAGNPQPVHGAGPGS-GSNVSMNQQNPQA--------P 229
RIV + L ++ N AG + +N +NQ P A P
Sbjct: 355 GRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVP 414
Query: 230 QAQSLGGMHVNGAPPLMQAS---MQGGVPAPGQ-MPAAVTGPGP----GSLAPGGGMQAQ 281
QAQ + M+ + QGG P Q MP+A+ GP LAP G A
Sbjct: 415 QAQGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPAS 474
Query: 282 VGMPGS---------GPVSMERG--QVPMQDPRAAMQRGSLPANVPTPRGLLGDAPNDPR 330
G+P + ++M+ G Q + Q G +P V A PR
Sbjct: 475 RGLPTTTQRVGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPR 534
Query: 331 GGTLLSVTGEV-EPRGYLGPPHQGPPMHHVPGHESRGPPPHELRGGPLPEPRPLMAEPRG 389
V P + P P HV G E L P E + ++ E
Sbjct: 535 AVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPL--TASMLAAAPPQEQKQMLGERLF 592
Query: 390 PMLDQRGPPLDGR 402
P++ L G+
Sbjct: 593 PLIQTMHSNLAGK 605
Score = 53.5 bits (127), Expect = 5e-07
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 9/129 (6%)
Query: 7 RDPAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQ 65
RDP++ +S + +VF+ N+ + L D FS G ++S ++V D E G KGY F ++
Sbjct: 89 RDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYAFVHFE 146
Query: 66 DQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIESPY----GETISP 121
QE A A+ +NG + R + V S K +E LG A + Y GE +
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE--AELGAKAKEFTNVYIKNFGEEVDD 204
Query: 122 EDAPESISK 130
E E S+
Sbjct: 205 ESLKELFSQ 213
Score = 47.0 bits (110), Expect = 5e-05
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 15 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 74
+ S++VG++ + TE L + FS GPV+S R+ D T + GY + +Q A A+
Sbjct: 10 MASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 75 RNLNGREFSGRALRV 89
+N G+ +R+
Sbjct: 70 DTMNFDVIKGKPIRI 84
>gi|5803137 RNA binding motif protein 3 [Homo sapiens]
Length = 157
Score = 66.2 bits (160), Expect = 8e-11
Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
+FVG + + E+ L+D FS GP+ +V DRET + +G+GF + + E A AMR +
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67
Query: 78 NGREFSGRALRVDNAASEKNKEELKSLGTGA 108
NG GR +RVD+A K+ + G GA
Sbjct: 68 NGESLDGRQIRVDHAG--KSARGTRGGGFGA 96
>gi|18201888 poly(A) binding protein, cytoplasmic 5 [Homo sapiens]
Length = 382
Score = 65.9 bits (159), Expect = 1e-10
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 16/140 (11%)
Query: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGF 61
A + RD A + +VFV NI + +E+LK++F E GP S +++ D +GK KG+GF
Sbjct: 188 AEVRTRDRA---TFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGF 243
Query: 62 CEYQDQETALSAMRNLNGREFSGRALRVDNAAS------------EKNKEELKSLGTGAP 109
Y+ E A A+ +L+G+ G+ L V A E+ + + KS G P
Sbjct: 244 VRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP 303
Query: 110 VIESPYGETISPEDAPESIS 129
+ ETI+ E E S
Sbjct: 304 IYIKNLDETINDEKLKEEFS 323
Score = 38.9 bits (89), Expect = 0.013
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQ---DQETALSA 73
+++VG++ + TE+ L F GP+ R+ D T P GYG+ ++ D E AL+
Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNT 78
Query: 74 MR--NLNGREF 82
M +NG+ F
Sbjct: 79 MNFDLINGKPF 89
Score = 37.7 bits (86), Expect = 0.029
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
+++ N+ +E+LK+ FS G + +++ E G+ KG+G + E A A+ +
Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMM--EVGQGKGFGVVCFSSFEEATKAVDEM 361
Query: 78 NGREFSGRALRV 89
NGR + L V
Sbjct: 362 NGRIVGSKPLHV 373
Score = 30.8 bits (68), Expect = 3.5
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
++F+ N+ L +FS G ++S ++V D + G KGY + + A A+ +
Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD-DNGS-KGYAYVHFDSLAAANRAIWH 164
Query: 77 LNGREFSGRALRV 89
+NG + R + V
Sbjct: 165 MNGVRLNNRQVYV 177
>gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Homo
sapiens]
Length = 631
Score = 65.5 bits (158), Expect = 1e-10
Identities = 100/422 (23%), Positives = 151/422 (35%), Gaps = 65/422 (15%)
Query: 13 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALS 72
+ +V++ N E +E LK++FS+ G +S +++ D GK KG+GF Y+ E A
Sbjct: 188 KEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANK 246
Query: 73 AMRNLNGREFSGRALRVDNAAS------------EKNKEELKSLGTGAPVIESPYGETIS 120
A+ +NG+E SG+ + V A E+ K+E S G + +TI
Sbjct: 247 AVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 306
Query: 121 PEDAPESISKAVASLPPEQMFE--LMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVV 178
E + S + + M E K +SP+EA + ++
Sbjct: 307 DEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAV------------TEMN 354
Query: 179 MRIVDPEIALKILHRQTNIPTLIAGNPQPVHGAGPGS-GSNVSMNQQNPQA--------P 229
RIV + L ++ N AG + +N +NQ P A P
Sbjct: 355 GRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVP 414
Query: 230 QAQSLGGMHVNGAPPLMQAS---MQGGVPAPGQ-MPAAVTGPGP----GSLAPGGGMQAQ 281
QAQ + M+ + QGG P Q MP+A+ GP LAP G A
Sbjct: 415 QAQGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPAS 474
Query: 282 VGMPGSGPVSMERGQVPMQDPRAAMQRGSLPANVPTPRGLLGDAPNDPRGGTLLSVTGEV 341
G+P QR +P V A PR V
Sbjct: 475 RGLP------------------TTTQRVGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSV 516
Query: 342 -EPRGYLGPPHQGPPMHHVPGHESRGPPPHELRGGPLPEPRPLMAEPRGPMLDQRGPPLD 400
P + P P HV G E L P E + ++ E P++ L
Sbjct: 517 RSPHPAIQPLQAPQPAVHVQGQEPL--TASMLAAAPPQEQKQMLGERLFPLIQTMHSNLA 574
Query: 401 GR 402
G+
Sbjct: 575 GK 576
Score = 53.5 bits (127), Expect = 5e-07
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 9/129 (6%)
Query: 7 RDPAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQ 65
RDP++ +S + +VF+ N+ + L D FS G ++S ++V D E G KGY F ++
Sbjct: 89 RDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYAFVHFE 146
Query: 66 DQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIESPY----GETISP 121
QE A A+ +NG + R + V S K +E LG A + Y GE +
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE--AELGAKAKEFTNVYIKNFGEEVDD 204
Query: 122 EDAPESISK 130
E E S+
Sbjct: 205 ESLKELFSQ 213
Score = 47.0 bits (110), Expect = 5e-05
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 15 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 74
+ S++VG++ + TE L + FS GPV+S R+ D T + GY + +Q A A+
Sbjct: 10 MASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 75 RNLNGREFSGRALRV 89
+N G+ +R+
Sbjct: 70 DTMNFDVIKGKPIRI 84
>gi|60279268 U2 (RNU2) small nuclear RNA auxiliary factor 2 isoform
b [Homo sapiens]
Length = 471
Score = 65.1 bits (157), Expect = 2e-10
Identities = 32/104 (30%), Positives = 51/104 (49%)
Query: 11 VDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETA 70
V S +F+G +P ++Q+K++ + GP+ +F LV D TG KGY FCEY D
Sbjct: 254 VPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVT 313
Query: 71 LSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIESP 114
A+ LNG + + L V A+ L ++ ++ P
Sbjct: 314 DQAIAGLNGMQLGDKKLLVQRASVGAKNATLSTINQTPVTLQVP 357
Score = 36.2 bits (82), Expect = 0.084
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 18/88 (20%)
Query: 13 RSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYDRETGKPKGYGF 61
R R ++VGNIP+ TEE + D F+ PV++ ++ D K + F
Sbjct: 146 RQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAF 199
Query: 62 CEYQDQETALSAMRNLNGREFSGRALRV 89
E++ + AM +G F G++L++
Sbjct: 200 LEFRSVDETTQAMA-FDGIIFQGQSLKI 226
>gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo
sapiens]
Length = 448
Score = 64.7 bits (156), Expect = 2e-10
Identities = 82/353 (23%), Positives = 131/353 (37%), Gaps = 35/353 (9%)
Query: 9 PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQE 68
P D +F+G IP E+ LK +F E G + ++ DR TG KG F Y ++E
Sbjct: 47 PMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERE 106
Query: 69 TALSAMRNLNGREF---SGRALRVDNAASEKNKEELKSLGTGAPVIESPYGETISPEDAP 125
+AL A L+ ++ R ++V A SE E+ K L G + + +A
Sbjct: 107 SALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRK-LFVGMLNKQQSEDDVRRLFEAF 165
Query: 126 ESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVDPE 185
+I + P+ + +K Q A N L + + A + +V++ D +
Sbjct: 166 GNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGA--SSSLVVKFADTD 223
Query: 186 IALKILHRQTNIPTLIAGNPQPVHGAGPGSGSNVSMNQQ-------------NPQ----A 228
+ Q + NP + G+ + M QQ NP A
Sbjct: 224 KERTMRRMQQMAGQMGMFNPMAIPFGAYGAYAQALMQQQAALMASVAQGGYLNPMAAFAA 283
Query: 229 PQAQSLGGMHVNGAPPLMQASMQGGVPAPG-QMPAAVTGPGPGSLAPGGGMQAQV-GMPG 286
Q Q + +++NG GG PG PA + P P + G+ Q G P
Sbjct: 284 AQMQQMAALNMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPA 343
Query: 287 SG----------PVSMERGQVPMQDPRAAMQRGSLPANVPTPRGLLGDAPNDP 329
+ P P+Q A +Q+ + PA P G + A P
Sbjct: 344 AEAVFANGIHPYPAQSPTAADPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQP 396
>gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo
sapiens]
Length = 437
Score = 64.3 bits (155), Expect = 3e-10
Identities = 26/77 (33%), Positives = 47/77 (61%)
Query: 14 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSA 73
+ +++FV + Y+ TE +L+ F GP+ +VY + +GKP+GY F EY+ + SA
Sbjct: 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSA 160
Query: 74 MRNLNGREFSGRALRVD 90
++ +G++ GR + VD
Sbjct: 161 YKHADGKKIDGRRVLVD 177
>gi|116734698 RNA binding motif protein 23 isoform 3 [Homo sapiens]
Length = 405
Score = 64.3 bits (155), Expect = 3e-10
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
++VG++ + TE+ L+ IF G + + L+ D +TG+ KGYGF + D E A A+ L
Sbjct: 231 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 290
Query: 78 NGREFSGRALRV 89
NG E +GR +RV
Sbjct: 291 NGFELAGRPMRV 302
Score = 43.1 bits (100), Expect = 7e-04
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYG---FCEYQDQE 68
+R R+VF + L+D FS VG V R++ DR + + KG FCE Q
Sbjct: 128 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVP 187
Query: 69 TALSAMRNLNGREFSGRALRVDNAASEKNK 98
A+ L G+ G + V + +EKN+
Sbjct: 188 LAI----GLTGQRLLGVPIIVQASQAEKNR 213
>gi|116734696 RNA binding motif protein 23 isoform 1 [Homo sapiens]
Length = 439
Score = 64.3 bits (155), Expect = 3e-10
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
++VG++ + TE+ L+ IF G + + L+ D +TG+ KGYGF + D E A A+ L
Sbjct: 265 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 324
Query: 78 NGREFSGRALRV 89
NG E +GR +RV
Sbjct: 325 NGFELAGRPMRV 336
Score = 43.1 bits (100), Expect = 7e-04
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYG---FCEYQDQE 68
+R R+VF + L+D FS VG V R++ DR + + KG FCE Q
Sbjct: 162 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVP 221
Query: 69 TALSAMRNLNGREFSGRALRVDNAASEKNK 98
A+ L G+ G + V + +EKN+
Sbjct: 222 LAI----GLTGQRLLGVPIIVQASQAEKNR 247
>gi|116734694 RNA binding motif protein 23 isoform 2 [Homo sapiens]
Length = 423
Score = 64.3 bits (155), Expect = 3e-10
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
++VG++ + TE+ L+ IF G + + L+ D +TG+ KGYGF + D E A A+ L
Sbjct: 249 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 308
Query: 78 NGREFSGRALRV 89
NG E +GR +RV
Sbjct: 309 NGFELAGRPMRV 320
Score = 43.1 bits (100), Expect = 7e-04
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYG---FCEYQDQE 68
+R R+VF + L+D FS VG V R++ DR + + KG FCE Q
Sbjct: 146 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVP 205
Query: 69 TALSAMRNLNGREFSGRALRVDNAASEKNK 98
A+ L G+ G + V + +EKN+
Sbjct: 206 LAI----GLTGQRLLGVPIIVQASQAEKNR 231
>gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo
sapiens]
Length = 644
Score = 64.3 bits (155), Expect = 3e-10
Identities = 100/423 (23%), Positives = 156/423 (36%), Gaps = 54/423 (12%)
Query: 13 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALS 72
+ +V++ N E +E LK++FS+ G +S +++ D GK KG+GF Y+ E A
Sbjct: 188 KEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANK 246
Query: 73 AMRNLNGREFSGRALRVDNAAS------------EKNKEELKSLGTGAPVIESPYGETIS 120
A+ +NG+E SG+ + V A E+ K+E S G + +TI
Sbjct: 247 AVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 306
Query: 121 PEDAPESISKAVASLPPEQMFE--LMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVV 178
E + S + + M E K +SP+EA + ++
Sbjct: 307 DEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAV------------TEMN 354
Query: 179 MRIVDPEIALKILHRQTNIPTLIAGNPQPVHGAGPGS-GSNVSMNQQNPQA--------P 229
RIV + L ++ N AG + +N +NQ P A P
Sbjct: 355 GRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVP 414
Query: 230 QAQSLGGMHVNGAPPLMQAS---MQGGVPAPGQ-MPAAVTGPGP----GSLAP-GGGMQA 280
QAQ + M+ + QGG P Q MP+A+ GP LAP G
Sbjct: 415 QAQGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGSECPD 474
Query: 281 QVGMPGSGPVSMERGQVPMQDPRAAMQRGSLPANVPTPRGLLGDAPNDPRGGTLLSVTGE 340
++ M G + ++G + Q G +P V A PR
Sbjct: 475 RLAMDFGGAGAAQQGLTD------SCQSGGVPTAVQNLAPRAAVAAAAPRAVAPYKYASS 528
Query: 341 V-EPRGYLGPPHQGPPMHHVPGHESRGPPPHELRGGPLPEPRPLMAEPRGPMLDQRGPPL 399
V P + P P HV G E L P E + ++ E P++ L
Sbjct: 529 VRSPHPAIQPLQAPQPAVHVQGQEPL--TASMLAAAPPQEQKQMLGERLFPLIQTMHSNL 586
Query: 400 DGR 402
G+
Sbjct: 587 AGK 589
Score = 53.5 bits (127), Expect = 5e-07
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 9/129 (6%)
Query: 7 RDPAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQ 65
RDP++ +S + +VF+ N+ + L D FS G ++S ++V D E G KGY F ++
Sbjct: 89 RDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYAFVHFE 146
Query: 66 DQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIESPY----GETISP 121
QE A A+ +NG + R + V S K +E LG A + Y GE +
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE--AELGAKAKEFTNVYIKNFGEEVDD 204
Query: 122 EDAPESISK 130
E E S+
Sbjct: 205 ESLKELFSQ 213
Score = 47.0 bits (110), Expect = 5e-05
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 15 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 74
+ S++VG++ + TE L + FS GPV+S R+ D T + GY + +Q A A+
Sbjct: 10 MASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 75 RNLNGREFSGRALRV 89
+N G+ +R+
Sbjct: 70 DTMNFDVIKGKPIRI 84
>gi|6005926 U2 (RNU2) small nuclear RNA auxiliary factor 2 isoform a
[Homo sapiens]
Length = 475
Score = 63.9 bits (154), Expect = 4e-10
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 11 VDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETA 70
V S +F+G +P ++Q+K++ + GP+ +F LV D TG KGY FCEY D
Sbjct: 254 VPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVT 313
Query: 71 LSAMRNLNGREFSGRALRVDNAA 93
A+ LNG + + L V A+
Sbjct: 314 DQAIAGLNGMQLGDKKLLVQRAS 336
Score = 36.2 bits (82), Expect = 0.084
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 18/88 (20%)
Query: 13 RSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYDRETGKPKGYGF 61
R R ++VGNIP+ TEE + D F+ PV++ ++ D K + F
Sbjct: 146 RQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAF 199
Query: 62 CEYQDQETALSAMRNLNGREFSGRALRV 89
E++ + AM +G F G++L++
Sbjct: 200 LEFRSVDETTQAMA-FDGIIFQGQSLKI 226
>gi|4502847 cold inducible RNA binding protein [Homo sapiens]
Length = 172
Score = 63.5 bits (153), Expect = 5e-10
Identities = 27/80 (33%), Positives = 48/80 (60%)
Query: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
+FVG + ++ E+ L+ +FS+ G + +V DRET + +G+GF +++ + A AM +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 78 NGREFSGRALRVDNAASEKN 97
NG+ GR +RVD A +
Sbjct: 68 NGKSVDGRQIRVDQAGKSSD 87
>gi|238859597 RNA binding motif protein 34 isoform 1 [Homo sapiens]
Length = 430
Score = 63.2 bits (152), Expect = 6e-10
Identities = 34/90 (37%), Positives = 55/90 (61%), Gaps = 4/90 (4%)
Query: 13 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALS 72
R RSVFVGN+PY+ E ++ F + G +++ R+V D+ TG KG+G+ +++ ++
Sbjct: 284 RDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHL 343
Query: 73 AMRNLNGREFSGRALRVDNAASEKNKEELK 102
A++ LN E GR LRV + NKE+ K
Sbjct: 344 ALK-LNNSELMGRKLRVMRSV---NKEKFK 369
Score = 35.8 bits (81), Expect = 0.11
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 18/109 (16%)
Query: 16 RSVFVGNIPYEATEEQLKDIFSEVGPV--VSFRLVYDRETGKPKGY-------------- 59
R+VFVGN+P +++LK F E G + V FR + E K
Sbjct: 185 RTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNI 244
Query: 60 -GFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTG 107
+ ++++ A A++ + G +RVD ASE + + +S+ G
Sbjct: 245 NAYVVFKEESAATQALKRNGAQIADGFRIRVD-LASETSSRDKRSVFVG 292
>gi|226497734 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 62.8 bits (151), Expect = 8e-10
Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
+FV N+PY +TEE L+ +FS+ GP+ D T KPKG+ F + E A+ A +
Sbjct: 404 LFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEV 463
Query: 78 NGREFSGRALRV-DNAASEKNKEELKSLGTGA 108
+G+ F GR L V + ++ E+ +LG+ +
Sbjct: 464 DGQVFQGRMLHVLPSTIKKEASEDASALGSSS 495
Score = 50.1 bits (118), Expect = 6e-06
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETG---KPKGYGFCEYQDQETALSA 73
++F+ N+ ++ TEE+LK++FS+VG V S + + G+GF EY+ E A A
Sbjct: 731 TLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKA 790
Query: 74 MRNLNGREFSGRALRV 89
++ L G G L V
Sbjct: 791 LKQLQGHVVDGHKLEV 806
Score = 40.0 bits (92), Expect = 0.006
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRE-TGKPKGYGFCEYQDQETALSAMRN 76
+ V NIP++A +++++FS G + + RL TG +G+GF ++ ++ A A
Sbjct: 834 ILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNA 893
Query: 77 L-NGREFSGRALRVDNAASEKNKEELK 102
L + GR L ++ A SE + L+
Sbjct: 894 LCHSTHLYGRRLVLEWADSEVTLQALR 920
Score = 33.5 bits (75), Expect = 0.55
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
+ V N+P EE+ + +F+ G + L + ++ GK + +GF ++ +E A A ++
Sbjct: 4 LIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKD-GKFRKFGFIGFKSEEEAQKAQKHF 62
Query: 78 N 78
N
Sbjct: 63 N 63
>gi|226497654 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 62.8 bits (151), Expect = 8e-10
Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
+FV N+PY +TEE L+ +FS+ GP+ D T KPKG+ F + E A+ A +
Sbjct: 404 LFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEV 463
Query: 78 NGREFSGRALRV-DNAASEKNKEELKSLGTGA 108
+G+ F GR L V + ++ E+ +LG+ +
Sbjct: 464 DGQVFQGRMLHVLPSTIKKEASEDASALGSSS 495
Score = 50.1 bits (118), Expect = 6e-06
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETG---KPKGYGFCEYQDQETALSA 73
++F+ N+ ++ TEE+LK++FS+VG V S + + G+GF EY+ E A A
Sbjct: 731 TLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKA 790
Query: 74 MRNLNGREFSGRALRV 89
++ L G G L V
Sbjct: 791 LKQLQGHVVDGHKLEV 806
Score = 40.0 bits (92), Expect = 0.006
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRE-TGKPKGYGFCEYQDQETALSAMRN 76
+ V NIP++A +++++FS G + + RL TG +G+GF ++ ++ A A
Sbjct: 834 ILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNA 893
Query: 77 L-NGREFSGRALRVDNAASEKNKEELK 102
L + GR L ++ A SE + L+
Sbjct: 894 LCHSTHLYGRRLVLEWADSEVTLQALR 920
Score = 33.5 bits (75), Expect = 0.55
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
+ V N+P EE+ + +F+ G + L + ++ GK + +GF ++ +E A A ++
Sbjct: 4 LIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKD-GKFRKFGFIGFKSEEEAQKAQKHF 62
Query: 78 N 78
N
Sbjct: 63 N 63
>gi|226497574 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 62.8 bits (151), Expect = 8e-10
Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
+FV N+PY +TEE L+ +FS+ GP+ D T KPKG+ F + E A+ A +
Sbjct: 404 LFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEV 463
Query: 78 NGREFSGRALRV-DNAASEKNKEELKSLGTGA 108
+G+ F GR L V + ++ E+ +LG+ +
Sbjct: 464 DGQVFQGRMLHVLPSTIKKEASEDASALGSSS 495
Score = 50.1 bits (118), Expect = 6e-06
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETG---KPKGYGFCEYQDQETALSA 73
++F+ N+ ++ TEE+LK++FS+VG V S + + G+GF EY+ E A A
Sbjct: 731 TLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKA 790
Query: 74 MRNLNGREFSGRALRV 89
++ L G G L V
Sbjct: 791 LKQLQGHVVDGHKLEV 806
Score = 40.0 bits (92), Expect = 0.006
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRE-TGKPKGYGFCEYQDQETALSAMRN 76
+ V NIP++A +++++FS G + + RL TG +G+GF ++ ++ A A
Sbjct: 834 ILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNA 893
Query: 77 L-NGREFSGRALRVDNAASEKNKEELK 102
L + GR L ++ A SE + L+
Sbjct: 894 LCHSTHLYGRRLVLEWADSEVTLQALR 920
Score = 33.5 bits (75), Expect = 0.55
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
+ V N+P EE+ + +F+ G + L + ++ GK + +GF ++ +E A A ++
Sbjct: 4 LIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKD-GKFRKFGFIGFKSEEEAQKAQKHF 62
Query: 78 N 78
N
Sbjct: 63 N 63
>gi|4826972 RNA binding motif protein 8A [Homo sapiens]
Length = 174
Score = 62.0 bits (149), Expect = 1e-09
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 8 DPAVDRSLRS--VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQ 65
+P RS+ +FV + EATEE + D F+E G + + L DR TG KGY EY+
Sbjct: 63 EPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYE 122
Query: 66 DQETALSAMRNLNGREFSGRALRVD 90
+ A +AM LNG++ G+ + VD
Sbjct: 123 TYKEAQAAMEGLNGQDLMGQPISVD 147
>gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
Length = 636
Score = 62.0 bits (149), Expect = 1e-09
Identities = 30/91 (32%), Positives = 56/91 (61%), Gaps = 2/91 (2%)
Query: 13 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALS 72
+ +V++ N + +E+LKD+F + GP +S +++ D E+GK KG+GF ++ E A
Sbjct: 188 KEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQK 246
Query: 73 AMRNLNGREFSGRALRVDNAASEKNKE-ELK 102
A+ +NG+E +G+ + V A + ++ ELK
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Score = 53.1 bits (126), Expect = 7e-07
Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 5/139 (3%)
Query: 7 RDPAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQ 65
RDP++ +S + ++F+ N+ + L D FS G ++S ++V D E G KGYGF ++
Sbjct: 89 RDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFE 146
Query: 66 DQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIESPYGETISPEDAP 125
QE A A+ +NG + R + V S K +E LG A + Y + +
Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE--AELGARAKEFTNVYIKNFGEDMDD 204
Query: 126 ESISKAVASLPPEQMFELM 144
E + P ++M
Sbjct: 205 ERLKDLFGKFGPALSVKVM 223
Score = 45.8 bits (107), Expect = 1e-04
Identities = 22/75 (29%), Positives = 40/75 (53%)
Query: 15 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 74
+ S++VG++ + TE L + FS GP++S R+ D T + GY + +Q A A+
Sbjct: 10 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 75 RNLNGREFSGRALRV 89
+N G+ +R+
Sbjct: 70 DTMNFDVIKGKPVRI 84
Score = 41.2 bits (95), Expect = 0.003
Identities = 67/278 (24%), Positives = 110/278 (39%), Gaps = 49/278 (17%)
Query: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
+++V N+ +E+L+ FS G + S +++ E G+ KG+GF + E A A+
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 352
Query: 77 LNGREFSGRALRVDNAASEKNKEELKSLGTGAPV-----IESPYGETISP-EDAPES--- 127
+NGR + + L V A + KEE ++ T + + + I+P + AP S
Sbjct: 353 MNGRIVATKPLYV---ALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYF 409
Query: 128 ------ISKAVASLPPEQMFELMKQMKLCVQNS-PQEARNM------LLQNPQLAYALLQ 174
A PP Q+ +L + Q + P +NM P +
Sbjct: 410 MAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPA 469
Query: 175 AQVVMRIVDPEIALKILHRQTNIPTLIAGNPQPVHGAGPGSGSNVSMNQ-------QNPQ 227
+ V R++ + R N T G P+P A + + ++ Q +NPQ
Sbjct: 470 SSQVPRVMSTQ-------RVANTSTQTMG-PRPAAAAAAATPAVRTVPQYKYAAGVRNPQ 521
Query: 228 -----APQ-AQSLGGMHVNGAPPLMQASMQGGVPAPGQ 259
PQ +HV G PL ASM P Q
Sbjct: 522 QHLNAQPQVTMQQPAVHVQGQEPL-TASMLASAPPQEQ 558
>gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 61.6 bits (148), Expect = 2e-09
Identities = 30/87 (34%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Query: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
+V++ N + +E+LKD+F + GP +S +++ D E+GK KG+GF ++ E A A+
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 77 LNGREFSGRALRVDNAASEKNKE-ELK 102
+NG+E +G+ + V A + ++ ELK
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELK 277
Score = 52.0 bits (123), Expect = 1e-06
Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 5/139 (3%)
Query: 7 RDPAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQ 65
RDP++ +S + ++FV N+ + L D S G ++S +V D E G KGYGF ++
Sbjct: 89 RDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCD-ENGS-KGYGFVHFE 146
Query: 66 DQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIESPYGETISPEDAP 125
E A A++ +NG +GR + V S K +E LG A + Y + +
Sbjct: 147 THEAAERAIKKMNGMLLNGRKVFVGQFKSRKERE--AELGARAKEFPNVYIKNFGEDMDD 204
Query: 126 ESISKAVASLPPEQMFELM 144
E + P ++M
Sbjct: 205 ERLKDLFGKFGPALSVKVM 223
Score = 43.5 bits (101), Expect = 5e-04
Identities = 21/73 (28%), Positives = 38/73 (52%)
Query: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
S++VG++ + TE L + FS GP++S R+ D T Y + +Q + A A+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDT 71
Query: 77 LNGREFSGRALRV 89
+N G+ +R+
Sbjct: 72 MNFDVIKGKPVRI 84
Score = 42.0 bits (97), Expect = 0.002
Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 14/147 (9%)
Query: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
+++V N+ +E+L+ FS G + S +++ E G+ KG+GF + E A A+
Sbjct: 295 NLYVKNLDDGIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 352
Query: 77 LNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIESPYGETISPEDAPES--------- 127
+NGR + + L V A + KEE ++ T + + + AP S
Sbjct: 353 MNGRIVATKPLYV---ALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVPQ 409
Query: 128 ISKAVASLPPEQMFELMKQMKLCVQNS 154
A PP Q+ L + Q +
Sbjct: 410 TQNHAAYYPPSQIARLRPSPRWTAQGA 436
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 60.8 bits (146), Expect = 3e-09
Identities = 82/308 (26%), Positives = 111/308 (36%), Gaps = 36/308 (11%)
Query: 243 PPLMQASMQGGVPAPGQMPAAVTGPGPGSLAPGGGMQAQVGMPGSGPVSMERGQVPMQDP 302
PPL G P PG P A+ GP PG P G + P GP S +P Q P
Sbjct: 6 PPLGGTPRPGPSPGPGPSPGAMLGPSPG---PSPGSAHSMMGPSPGPPSAGH-PIPTQGP 61
Query: 303 RAAMQRGSLPANVPTPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPHQGPPMHHVPGH 362
Q + P +DPR + + + G+ G GPP + H
Sbjct: 62 GGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGM--GMRSGGHAG---MGPPPSPMDQH 116
Query: 363 ESRGPPP---HELRGGPLPEPRP-----LMAEPRGPMLDQRGPPLDGRGGRDPRGIDARG 414
P P E P+P P + + P G LD P G+ R P +
Sbjct: 117 SQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQ 176
Query: 415 M-EARA-MEARGLDARGLEARAMEARAMEARAMEARAMEARAMEVRGMEARGMDTRGPVP 472
+ + RA + A + ARG A++ + R M ++ + + GP P
Sbjct: 177 LHQLRAQIMAYKMLARGQPLPDHLQMAVQGK----RPMPGMQQQMPTLPPPSVSATGPGP 232
Query: 473 GPRGPIPSGMQGPSPIN------MGA--VVPQGSRQVPVMQGTGMQGASIQGGSQPGGFS 524
GP GP P GP+P N MG + P G VP GM G G +P
Sbjct: 233 GP-GPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVP----PGMPGQPPGGPPKPWPEG 287
Query: 525 PGQNQVTP 532
P N P
Sbjct: 288 PMANAAAP 295
Score = 37.7 bits (86), Expect = 0.029
Identities = 59/229 (25%), Positives = 77/229 (33%), Gaps = 69/229 (30%)
Query: 207 PVHGAGPGSGSNVS-------MNQQNPQAPQAQSLGGMHVNG------------------ 241
PV +GP SG +S ++ +PQA Q+ G N
Sbjct: 133 PVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLAR 192
Query: 242 ---APPLMQASMQGGVPAPG---QMP--------AAVTGPGPGSLAPGGGMQAQVGMPGS 287
P +Q ++QG P PG QMP A GPGPG PG G PG
Sbjct: 193 GQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPG---PGPG-------PGP 242
Query: 288 GPVSMERGQVPMQDPRAAMQRGSLPANVPT--PRGLLGDAPNDP----------RGGTLL 335
GP P M ++P P+ P G+ G P P
Sbjct: 243 GPAP------PNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPT 296
Query: 336 SVTGEVEPRGYLGPPHQGPPMHHVPGHESRGPPPHELRGGPLPEPRPLM 384
S ++ P G P PP VP S PP G +P P++
Sbjct: 297 STPQKLIPPQPTGRPSPAPPA--VPPAASPVMPPQTQSPGQPAQPAPMV 343
Score = 34.7 bits (78), Expect = 0.25
Identities = 44/180 (24%), Positives = 64/180 (35%), Gaps = 28/180 (15%)
Query: 198 PTLIAGNPQPVHGAGPGSGSNVSMNQQNPQAPQAQSLGGMHV-----NGAPPLMQASMQG 252
P++ A P P GPG G P + +GG ++ +G PP M G
Sbjct: 223 PSVSATGPGP----GPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPG 278
Query: 253 GVPAPGQMPAAVTGPGPGSLAPGGGMQAQV-----GMPGSGPVSMERGQVPMQDPRAAMQ 307
G P P GP + AP Q + G P P ++ P+ P+ Q
Sbjct: 279 GPPKPWP-----EGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAASPVMPPQT--Q 331
Query: 308 RGSLPANVPTPRGLLGDAPN------DPRGGTLLSVTGEVEPRGYLGPPHQGPPMHHVPG 361
PA P P L + PRG + + E E R H+ + ++PG
Sbjct: 332 SPGQPAQ-PAPMVPLHQKQSRITPIQKPRGLDPVEILQEREYRLQARIAHRIQELENLPG 390
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.133 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,356,752
Number of Sequences: 37866
Number of extensions: 1936288
Number of successful extensions: 11419
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 888
Number of HSP's that attempted gapping in prelim test: 7738
Number of HSP's gapped (non-prelim): 3382
length of query: 577
length of database: 18,247,518
effective HSP length: 108
effective length of query: 469
effective length of database: 14,157,990
effective search space: 6640097310
effective search space used: 6640097310
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.