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Search of human proteins with 4508021
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4508021 zinc finger protein 259 [Homo sapiens]
(459 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4508021 zinc finger protein 259 [Homo sapiens] 926 0.0
gi|45120115 hypothetical protein LOC56905 [Homo sapiens] 40 0.003
gi|148806884 AKT1 substrate 1 (proline-rich) [Homo sapiens] 38 0.022
gi|148806906 AKT1 substrate 1 (proline-rich) [Homo sapiens] 38 0.022
gi|148806896 AKT1 substrate 1 (proline-rich) [Homo sapiens] 38 0.022
gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens] 35 0.14
gi|139394646 iroquois homeobox protein 5 [Homo sapiens] 35 0.14
gi|191252814 RIMS binding protein 3B [Homo sapiens] 35 0.19
gi|191252806 RIMS binding protein 3C [Homo sapiens] 35 0.19
gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens] 35 0.19
gi|15147240 brother of CDO [Homo sapiens] 35 0.19
gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Hom... 34 0.24
gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Hom... 34 0.24
gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo ... 34 0.24
gi|163659920 pannexin 2 isoform 1 [Homo sapiens] 34 0.24
gi|237757297 pannexin 2 isoform 2 [Homo sapiens] 34 0.24
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 34 0.32
gi|23397672 homeobox D4 [Homo sapiens] 33 0.41
gi|149944526 additional sex combs like 3 [Homo sapiens] 33 0.41
gi|4507691 transformation/transcription domain-associated protei... 33 0.54
gi|40548422 chromatin modifying protein 4A [Homo sapiens] 33 0.54
gi|153792195 DKFZP434H0735 protein [Homo sapiens] 33 0.54
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 33 0.54
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 33 0.71
gi|39812378 RAN binding protein 9 [Homo sapiens] 33 0.71
gi|239750217 PREDICTED: hypothetical protein [Homo sapiens] 33 0.71
gi|239744524 PREDICTED: hypothetical protein XP_002343168 [Homo ... 33 0.71
gi|158534059 formin binding protein 4 [Homo sapiens] 33 0.71
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 33 0.71
gi|153792074 proline rich 12 [Homo sapiens] 33 0.71
>gi|4508021 zinc finger protein 259 [Homo sapiens]
Length = 459
Score = 926 bits (2392), Expect = 0.0
Identities = 459/459 (100%), Positives = 459/459 (100%)
Query: 1 MAASGAVEPGPPGAAVAPSPAPAPPPAPDHLFRPISAEDEEQQPTEIESLCMNCYCNGMT 60
MAASGAVEPGPPGAAVAPSPAPAPPPAPDHLFRPISAEDEEQQPTEIESLCMNCYCNGMT
Sbjct: 1 MAASGAVEPGPPGAAVAPSPAPAPPPAPDHLFRPISAEDEEQQPTEIESLCMNCYCNGMT 60
Query: 61 RLLLTKIPFFREIIVSSFSCEHCGWNNTEIQSAGRIQDQGVRYTLSVRALEDMNREVVKT 120
RLLLTKIPFFREIIVSSFSCEHCGWNNTEIQSAGRIQDQGVRYTLSVRALEDMNREVVKT
Sbjct: 61 RLLLTKIPFFREIIVSSFSCEHCGWNNTEIQSAGRIQDQGVRYTLSVRALEDMNREVVKT 120
Query: 121 DSAATRIPELDFEIPAFSQKGALTTVEGLITRAISGLEQDQPARRANKDATAERIDEFIV 180
DSAATRIPELDFEIPAFSQKGALTTVEGLITRAISGLEQDQPARRANKDATAERIDEFIV
Sbjct: 121 DSAATRIPELDFEIPAFSQKGALTTVEGLITRAISGLEQDQPARRANKDATAERIDEFIV 180
Query: 181 KLKELKQVASPFTLIIDDPSGNSFVENPHAPQKDDALVITHYNRTRQQEEMLGLQEEAPA 240
KLKELKQVASPFTLIIDDPSGNSFVENPHAPQKDDALVITHYNRTRQQEEMLGLQEEAPA
Sbjct: 181 KLKELKQVASPFTLIIDDPSGNSFVENPHAPQKDDALVITHYNRTRQQEEMLGLQEEAPA 240
Query: 241 EKPEEEDLRNEVLQFSTNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCGHRTNEVKS 300
EKPEEEDLRNEVLQFSTNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCGHRTNEVKS
Sbjct: 241 EKPEEEDLRNEVLQFSTNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCGHRTNEVKS 300
Query: 301 GGAVEPLGTRITLHITDASDMTRDLLKSETCSVEIPELEFELGMAVLGGKFTTLEGLLKD 360
GGAVEPLGTRITLHITDASDMTRDLLKSETCSVEIPELEFELGMAVLGGKFTTLEGLLKD
Sbjct: 301 GGAVEPLGTRITLHITDASDMTRDLLKSETCSVEIPELEFELGMAVLGGKFTTLEGLLKD 360
Query: 361 IRELVTKNPFTLGDSSNPGQTERLQEFSQKMDQIIEGNMKAHFIMDDPAGNSYLQNVYAP 420
IRELVTKNPFTLGDSSNPGQTERLQEFSQKMDQIIEGNMKAHFIMDDPAGNSYLQNVYAP
Sbjct: 361 IRELVTKNPFTLGDSSNPGQTERLQEFSQKMDQIIEGNMKAHFIMDDPAGNSYLQNVYAP 420
Query: 421 EDDPEMKVERYKRTFDQNEELGLNDMKTEGYEAGLAPQR 459
EDDPEMKVERYKRTFDQNEELGLNDMKTEGYEAGLAPQR
Sbjct: 421 EDDPEMKVERYKRTFDQNEELGLNDMKTEGYEAGLAPQR 459
>gi|45120115 hypothetical protein LOC56905 [Homo sapiens]
Length = 1047
Score = 40.4 bits (93), Expect = 0.003
Identities = 20/40 (50%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 9 PGPPGAAVA-PSPAPAPPPAPDHLFRPISAEDEEQQPTEI 47
P PP AVA P+PAPAP PAP P SA D P +
Sbjct: 709 PSPPAVAVASPAPAPAPSPAPARAQAPASARDPAPAPAPV 748
>gi|148806884 AKT1 substrate 1 (proline-rich) [Homo sapiens]
Length = 256
Score = 37.7 bits (86), Expect = 0.022
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 11/52 (21%)
Query: 2 AASGAVEPGPPGAAVAPSPAPAPPPAPDHLFRPISA----EDEEQQPTEIES 49
AA+ A P PP A PSP P+PP RP A E++E +PTE E+
Sbjct: 71 AATAARPPAPPPAPQPPSPTPSPP-------RPTLAREDNEEDEDEPTETET 115
>gi|148806906 AKT1 substrate 1 (proline-rich) [Homo sapiens]
Length = 256
Score = 37.7 bits (86), Expect = 0.022
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 11/52 (21%)
Query: 2 AASGAVEPGPPGAAVAPSPAPAPPPAPDHLFRPISA----EDEEQQPTEIES 49
AA+ A P PP A PSP P+PP RP A E++E +PTE E+
Sbjct: 71 AATAARPPAPPPAPQPPSPTPSPP-------RPTLAREDNEEDEDEPTETET 115
>gi|148806896 AKT1 substrate 1 (proline-rich) [Homo sapiens]
Length = 256
Score = 37.7 bits (86), Expect = 0.022
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 11/52 (21%)
Query: 2 AASGAVEPGPPGAAVAPSPAPAPPPAPDHLFRPISA----EDEEQQPTEIES 49
AA+ A P PP A PSP P+PP RP A E++E +PTE E+
Sbjct: 71 AATAARPPAPPPAPQPPSPTPSPP-------RPTLAREDNEEDEDEPTETET 115
>gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens]
Length = 502
Score = 35.0 bits (79), Expect = 0.14
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 4 SGAVEPGPPGAAVAPSPAPAPPPAP 28
SG + P PPGA P P P PPP P
Sbjct: 378 SGPLPPPPPGAGGPPMPPPPPPPPP 402
>gi|139394646 iroquois homeobox protein 5 [Homo sapiens]
Length = 483
Score = 35.0 bits (79), Expect = 0.14
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 3 ASGAVEPGPPGAAVAPSPAPAPPPA 27
A+G V PGP G +V SP P PPPA
Sbjct: 303 AAGEVPPGPGGPSVIHSPPPPPPPA 327
>gi|191252814 RIMS binding protein 3B [Homo sapiens]
Length = 1639
Score = 34.7 bits (78), Expect = 0.19
Identities = 35/132 (26%), Positives = 51/132 (38%), Gaps = 14/132 (10%)
Query: 9 PGPPGAAVAPSPAPAPPPAPDH--LFRPISAEDEEQQPTEIESLCMNCYCNGMTRLLLTK 66
PG + PSP P PPP H L P E E QP E+ L + G L+
Sbjct: 320 PGSRRLSPPPSPLPPPPPPSAHRKLSNPRGGEGSESQPCEV--LTPSPPGLGHHELIKLN 377
Query: 67 IPFFREIIVSSFSCEHCGWNNTEIQSAG----------RIQDQGVRYTLSVRALEDMNRE 116
+ + V + C N +++ AG R++ + T R L D RE
Sbjct: 378 WLLAKALWVLARRCYTLQEENKQLRRAGCPYQADEKVKRLKVKRAELTGLARRLADRARE 437
Query: 117 VVKTDSAATRIP 128
+ +T+ A P
Sbjct: 438 LQETNLRAVSAP 449
>gi|191252806 RIMS binding protein 3C [Homo sapiens]
Length = 1639
Score = 34.7 bits (78), Expect = 0.19
Identities = 35/132 (26%), Positives = 51/132 (38%), Gaps = 14/132 (10%)
Query: 9 PGPPGAAVAPSPAPAPPPAPDH--LFRPISAEDEEQQPTEIESLCMNCYCNGMTRLLLTK 66
PG + PSP P PPP H L P E E QP E+ L + G L+
Sbjct: 320 PGSRRLSPPPSPLPPPPPPSAHRKLSNPRGGEGSESQPCEV--LTPSPPGLGHHELIKLN 377
Query: 67 IPFFREIIVSSFSCEHCGWNNTEIQSAG----------RIQDQGVRYTLSVRALEDMNRE 116
+ + V + C N +++ AG R++ + T R L D RE
Sbjct: 378 WLLAKALWVLARRCYTLQEENKQLRRAGCPYQADEKVKRLKVKRAELTGLARRLADRARE 437
Query: 117 VVKTDSAATRIP 128
+ +T+ A P
Sbjct: 438 LQETNLRAVSAP 449
>gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens]
Length = 663
Score = 34.7 bits (78), Expect = 0.19
Identities = 16/27 (59%), Positives = 17/27 (62%)
Query: 2 AASGAVEPGPPGAAVAPSPAPAPPPAP 28
AA+ A PGP AP PAP PPPAP
Sbjct: 340 AAAAAAGPGPHLQHHAPPPAPPPPPAP 366
Score = 30.0 bits (66), Expect = 4.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 9 PGPPGAAVAPSPAPAPPPAP 28
P PP + P+P+P PPP P
Sbjct: 150 PPPPAPPLPPTPSPPPPPPP 169
>gi|15147240 brother of CDO [Homo sapiens]
Length = 1114
Score = 34.7 bits (78), Expect = 0.19
Identities = 16/60 (26%), Positives = 29/60 (48%)
Query: 10 GPPGAAVAPSPAPAPPPAPDHLFRPISAEDEEQQPTEIESLCMNCYCNGMTRLLLTKIPF 69
G PG P+ AP PP P+ + RP+ + +++ L + + +++T IPF
Sbjct: 816 GQPGRLPPPTLAPPQPPLPETIERPVGTGAMVARSSDLPYLIVGVVLGSIVLIIVTFIPF 875
>gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Homo
sapiens]
Length = 305
Score = 34.3 bits (77), Expect = 0.24
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 2 AASGAVEPGP-PGAAVAPSPAPAPPPAPDHLFRPISAEDEEQQ 43
A + A P P P AA AP+PAPAP PAP P +A E +
Sbjct: 172 APAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAE 214
Score = 29.3 bits (64), Expect = 7.8
Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 6 AVEPGP-PGAAVAPSPAPAPPPAPDHLFRPISAEDEEQQPTE 46
A P P P A AP APAP PAP P A + P E
Sbjct: 170 APAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQE 211
>gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Homo
sapiens]
Length = 305
Score = 34.3 bits (77), Expect = 0.24
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 2 AASGAVEPGP-PGAAVAPSPAPAPPPAPDHLFRPISAEDEEQQ 43
A + A P P P AA AP+PAPAP PAP P +A E +
Sbjct: 172 APAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAE 214
Score = 29.3 bits (64), Expect = 7.8
Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 6 AVEPGP-PGAAVAPSPAPAPPPAPDHLFRPISAEDEEQQPTE 46
A P P P A AP APAP PAP P A + P E
Sbjct: 170 APAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQE 211
>gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo
sapiens]
Length = 316
Score = 34.3 bits (77), Expect = 0.24
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 2 AASGAVEPGP-PGAAVAPSPAPAPPPAPDHLFRPISAEDEEQQ 43
A + A P P P AA AP+PAPAP PAP P +A E +
Sbjct: 183 APAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAE 225
Score = 29.3 bits (64), Expect = 7.8
Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 6 AVEPGP-PGAAVAPSPAPAPPPAPDHLFRPISAEDEEQQPTE 46
A P P P A AP APAP PAP P A + P E
Sbjct: 181 APAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQE 222
>gi|163659920 pannexin 2 isoform 1 [Homo sapiens]
Length = 677
Score = 34.3 bits (77), Expect = 0.24
Identities = 15/25 (60%), Positives = 17/25 (68%), Gaps = 5/25 (20%)
Query: 5 GAVEPGPPGAAVAPSPAPAPPPAPD 29
G +PGP P+PAPAPPPAPD
Sbjct: 487 GGGDPGP-----GPAPAPAPPPAPD 506
>gi|237757297 pannexin 2 isoform 2 [Homo sapiens]
Length = 643
Score = 34.3 bits (77), Expect = 0.24
Identities = 15/25 (60%), Positives = 17/25 (68%), Gaps = 5/25 (20%)
Query: 5 GAVEPGPPGAAVAPSPAPAPPPAPD 29
G +PGP P+PAPAPPPAPD
Sbjct: 487 GGGDPGP-----GPAPAPAPPPAPD 506
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 33.9 bits (76), Expect = 0.32
Identities = 16/28 (57%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 2 AASGAVEPGP-PGAAVAPSPAPAPPPAP 28
A G PG PGA AP P P PPPAP
Sbjct: 3 ARGGGGRPGESPGATPAPGPPPPPPPAP 30
Score = 29.6 bits (65), Expect = 6.0
Identities = 11/20 (55%), Positives = 11/20 (55%)
Query: 9 PGPPGAAVAPSPAPAPPPAP 28
P PP P P PAPPP P
Sbjct: 28 PAPPQQQPPPPPPPAPPPGP 47
>gi|23397672 homeobox D4 [Homo sapiens]
Length = 255
Score = 33.5 bits (75), Expect = 0.41
Identities = 21/43 (48%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Query: 8 EPGPPGAAVA----PSPAP-APPPAPDHLFRPISAEDEEQQPT 45
EPG PG A P PAP APPPAP R S D +Q P+
Sbjct: 81 EPGGPGGHYAAPGEPCPAPPAPPPAPLPGARAYSQSDPKQPPS 123
>gi|149944526 additional sex combs like 3 [Homo sapiens]
Length = 2248
Score = 33.5 bits (75), Expect = 0.41
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 9 PGPPGAAVAPSPAPAPPPAPDHLFRPISAEDEEQQPTEIES 49
P PP P P P PPP P L D++Q P +E+
Sbjct: 2023 PPPPPPLALPPPPPPPPPLPPPLPNAEVPSDQKQPPVTMET 2063
>gi|4507691 transformation/transcription domain-associated protein
[Homo sapiens]
Length = 3830
Score = 33.1 bits (74), Expect = 0.54
Identities = 16/27 (59%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 5 GAVE---PGPPGAAVAPSPAPAPPPAP 28
GAVE PG P A AP PAP+P P P
Sbjct: 478 GAVEAALPGVPTAPAAPGPAPSPAPVP 504
Score = 33.1 bits (74), Expect = 0.54
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 9 PGPPGAAVAPSPAPAPPPAP 28
P PG A +P+P PAPPP P
Sbjct: 491 PAAPGPAPSPAPVPAPPPPP 510
>gi|40548422 chromatin modifying protein 4A [Homo sapiens]
Length = 265
Score = 33.1 bits (74), Expect = 0.54
Identities = 35/155 (22%), Positives = 71/155 (45%), Gaps = 12/155 (7%)
Query: 89 EIQSAGRIQDQGVRYTL-SVRALEDMNREVVKTDSAATRIPELDFEIPAFSQKGALTTVE 147
E+Q+A + + R L ++R + +++ +TD + L+F+ A + A T E
Sbjct: 90 ELQTAKKYGTKNKRAALQALRRKKRFEQQLAQTDGT---LSTLEFQREAI--ENATTNAE 144
Query: 148 GLITRAISGLEQDQPARRANKDATAERIDEFIVKLKELKQVASPFTLIIDDPSGNSFVEN 207
L T ++ Q ++A +D +++DE + + E ++VA + I P G F ++
Sbjct: 145 VLRTMELAA----QSMKKAYQDMDIDKVDELMTDITEQQEVAQQISDAISRPMG--FGDD 198
Query: 208 PHAPQKDDALVITHYNRTRQQEEMLGLQEEAPAEK 242
+ + L Q+ +G +EE P+ K
Sbjct: 199 VDEDELLEELEELEQEELAQELLNVGDKEEEPSVK 233
>gi|153792195 DKFZP434H0735 protein [Homo sapiens]
Length = 1639
Score = 33.1 bits (74), Expect = 0.54
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 9 PGPPGAAVAPSPAPAPPPAPDH--LFRPISAEDEEQQPTEI 47
PG + PSP P PPP H L P E E QP E+
Sbjct: 320 PGSRRLSPPPSPLPPPPPPSAHRKLSNPRGGEGSESQPCEV 360
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 33.1 bits (74), Expect = 0.54
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 13/49 (26%)
Query: 5 GAVEPGPP---------GAAVAPSPAPAPPPAPDHLFRPISAEDEEQQP 44
GA P PP AA AP P PAPPP P P++A + P
Sbjct: 105 GATPPAPPRAPRGAPAAAAAAAPPPTPAPPPPP----APVAAAAPARAP 149
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 32.7 bits (73), Expect = 0.71
Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 8 EPGPPGAAVAPSPAPAPP-PAPDHLFRPISAE 38
EPG PG AP P P P PD L RP SA+
Sbjct: 163 EPGVPGQPGAPGPPGHPSHPGPDGLSRPFSAQ 194
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 32.7 bits (73), Expect = 0.71
Identities = 14/28 (50%), Positives = 14/28 (50%)
Query: 9 PGPPGAAVAPSPAPAPPPAPDHLFRPIS 36
P PP A AP P P PPP P P S
Sbjct: 73 PPPPPATAAPPPPPPPPPPPASAAAPAS 100
>gi|239750217 PREDICTED: hypothetical protein [Homo sapiens]
Length = 363
Score = 32.7 bits (73), Expect = 0.71
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 1 MAASGAVEPGPPGAAVAPSPAPAPPPAPDHLFRPISAEDEEQ 42
+A G P PP A P P+ PPP+P RP +DE +
Sbjct: 68 LAFPGKSSP-PPSAGPTPPPSSRPPPSPPRRRRPAWLQDEAE 108
>gi|239744524 PREDICTED: hypothetical protein XP_002343168 [Homo
sapiens]
Length = 363
Score = 32.7 bits (73), Expect = 0.71
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 1 MAASGAVEPGPPGAAVAPSPAPAPPPAPDHLFRPISAEDEEQ 42
+A G P PP A P P+ PPP+P RP +DE +
Sbjct: 68 LAFPGKSSP-PPSAGPTPPPSSRPPPSPPRRRRPAWLQDEAE 108
>gi|158534059 formin binding protein 4 [Homo sapiens]
Length = 1017
Score = 32.7 bits (73), Expect = 0.71
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 9 PGPPGAAVAPSPAPAPPPAPDHLFRPISAEDE 40
P PP P P P PPPA D + + EDE
Sbjct: 714 PPPPPPESPPPPPPPPPPAEDGEIQEVEMEDE 745
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 32.7 bits (73), Expect = 0.71
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 9 PGPPGAAV----APSPAPAPPPAPDHLFRPISAEDEEQQPTE 46
PGPP A AP P P PPP D + + P E
Sbjct: 1648 PGPPAPAAPAPAAPQPGPDPPPGTDSGIEEVDSRSSSDHPLE 1689
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 32.7 bits (73), Expect = 0.71
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 5 GAVEPGPPGAAVAPSPAPAPPPAP 28
G ++ GP AA P P P PPPAP
Sbjct: 1028 GLIQSGPHQAAPPPPPPPPPPPAP 1051
Score = 30.8 bits (68), Expect = 2.7
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 6 AVEPGPPGAAVAPSP-APAPPPAPDHLFRPISAEDEEQQP 44
A P G + AP P APAPPP P+ + S + EQ P
Sbjct: 1680 AKNPVSAGGSSAPPPKAPAPPPKPETPEKTTSEKPPEQTP 1719
Score = 30.4 bits (67), Expect = 3.5
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 9 PGPPGAAVAPSPA-PAPPPAPDHLFRPISAEDEE 41
P PP P PA P+PPP P P++A EE
Sbjct: 1496 PPPPPLPPPPPPAMPSPPPPPPPAAAPLAAPPEE 1529
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.132 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,072,022
Number of Sequences: 37866
Number of extensions: 968788
Number of successful extensions: 10863
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 107
Number of HSP's that attempted gapping in prelim test: 9279
Number of HSP's gapped (non-prelim): 1328
length of query: 459
length of database: 18,247,518
effective HSP length: 106
effective length of query: 353
effective length of database: 14,233,722
effective search space: 5024503866
effective search space used: 5024503866
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.