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Search of human proteins with 4505965
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4505965 POU class 4 homeobox 3 [Homo sapiens]
(338 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4505965 POU class 4 homeobox 3 [Homo sapiens] 681 0.0
gi|110347455 Brn3b POU domain transcription factor [Homo sapiens] 451 e-127
gi|110347449 POU domain, class 4, transcription factor 1 [Homo s... 441 e-124
gi|51702521 POU domain, class 3, transcription factor 2 [Homo sa... 159 3e-39
gi|110624765 POU domain, class 3, transcription factor 1 [Homo s... 155 4e-38
gi|5453936 POU class 3 homeobox 3 [Homo sapiens] 154 8e-38
gi|110624763 POU domain, class 3, transcription factor 4 [Homo s... 148 6e-36
gi|148664218 POU transcription factor [Homo sapiens] 143 2e-34
gi|170650730 pituitary specific transcription factor 1 isoform b... 139 5e-33
gi|4505955 pituitary specific transcription factor 1 isoform alp... 139 5e-33
gi|42476164 POU class 2 homeobox 1 [Homo sapiens] 134 9e-32
gi|4505959 POU domain, class 2, transcription factor 2 [Homo sap... 134 9e-32
gi|116235491 POU domain, class 5, transcription factor 1 isoform... 125 4e-29
gi|42560248 POU domain, class 5, transcription factor 1 isoform ... 125 4e-29
gi|227430410 POU class 5 homeobox 1B [Homo sapiens] 120 1e-27
gi|223890225 POU class 6 homeobox 1 [Homo sapiens] 112 4e-25
gi|23463326 POU domain class 5, transcription factor 2 [Homo sap... 99 5e-21
gi|157743257 POU domain, class 6, transcription factor 2 [Homo s... 94 1e-19
gi|11641283 LIM homeobox protein 5 [Homo sapiens] 55 9e-08
gi|30410785 LIM homeobox protein 1 [Homo sapiens] 53 4e-07
gi|33569216 LIM homeobox 9 isoform 1 [Homo sapiens] 51 1e-06
gi|62241033 LIM homeobox 9 isoform 2 [Homo sapiens] 51 1e-06
gi|126090663 zinc finger homeodomain 4 [Homo sapiens] 50 2e-06
gi|30795196 LIM homeobox protein 2 [Homo sapiens] 50 4e-06
gi|91208415 mesenchyme homeobox 1 isoform 3 [Homo sapiens] 47 2e-05
gi|4758710 mesenchyme homeobox 1 isoform 1 [Homo sapiens] 47 2e-05
gi|84105335 mesenchyme homeobox 2 [Homo sapiens] 47 3e-05
gi|30023847 LIM homeobox protein 3 isoform a [Homo sapiens] 47 3e-05
gi|7657303 LIM homeobox protein 3 isoform b [Homo sapiens] 47 3e-05
gi|24307887 one cut homeobox 1 [Homo sapiens] 47 3e-05
>gi|4505965 POU class 4 homeobox 3 [Homo sapiens]
Length = 338
Score = 681 bits (1757), Expect = 0.0
Identities = 338/338 (100%), Positives = 338/338 (100%)
Query: 1 MMAMNSKQPFGMHPVLQEPKFSSLHSGSEAMRRVCLPAPQLQGNIFGSFDESLLARAEAL 60
MMAMNSKQPFGMHPVLQEPKFSSLHSGSEAMRRVCLPAPQLQGNIFGSFDESLLARAEAL
Sbjct: 1 MMAMNSKQPFGMHPVLQEPKFSSLHSGSEAMRRVCLPAPQLQGNIFGSFDESLLARAEAL 60
Query: 61 AAVDIVSHGKNHPFKPDATYHTMSSVPCTSTSSTVPISHPAALTSHPHHAVHQGLEGDLL 120
AAVDIVSHGKNHPFKPDATYHTMSSVPCTSTSSTVPISHPAALTSHPHHAVHQGLEGDLL
Sbjct: 61 AAVDIVSHGKNHPFKPDATYHTMSSVPCTSTSSTVPISHPAALTSHPHHAVHQGLEGDLL 120
Query: 121 EHISPTLSVSGLGAPEHSVMPAQIHPHHLGAMGHLHQAMGMSHPHTVAPHSAMPACLSDV 180
EHISPTLSVSGLGAPEHSVMPAQIHPHHLGAMGHLHQAMGMSHPHTVAPHSAMPACLSDV
Sbjct: 121 EHISPTLSVSGLGAPEHSVMPAQIHPHHLGAMGHLHQAMGMSHPHTVAPHSAMPACLSDV 180
Query: 181 ESDPRELEAFAERFKQRRIKLGVTQADVGAALANLKIPGVGSLSQSTICRFESLTLSHNN 240
ESDPRELEAFAERFKQRRIKLGVTQADVGAALANLKIPGVGSLSQSTICRFESLTLSHNN
Sbjct: 181 ESDPRELEAFAERFKQRRIKLGVTQADVGAALANLKIPGVGSLSQSTICRFESLTLSHNN 240
Query: 241 MIALKPVLQAWLEEAEAAYREKNSKPELFNGSERKRKRTSIAAPEKRSLEAYFAIQPRPS 300
MIALKPVLQAWLEEAEAAYREKNSKPELFNGSERKRKRTSIAAPEKRSLEAYFAIQPRPS
Sbjct: 241 MIALKPVLQAWLEEAEAAYREKNSKPELFNGSERKRKRTSIAAPEKRSLEAYFAIQPRPS 300
Query: 301 SEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKYSAVH 338
SEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKYSAVH
Sbjct: 301 SEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKYSAVH 338
>gi|110347455 Brn3b POU domain transcription factor [Homo sapiens]
Length = 409
Score = 451 bits (1161), Expect = e-127
Identities = 237/335 (70%), Positives = 268/335 (80%), Gaps = 25/335 (7%)
Query: 22 SSLHSGSEAMRRVCLPAPQLQGNIFGSFDESLLARAEALAAVDIVSHGKNH--------P 73
SS GSEAMRR CLP P NIFG DESLLARAEALAAVDIVS K+H P
Sbjct: 78 SSGGGGSEAMRRACLPTPP--SNIFGGLDESLLARAEALAAVDIVSQSKSHHHHPPHHSP 135
Query: 74 FKPDATYHTMSSVPCTS--TSSTVPISHPAALTS---------HPHHAVHQGLEGDLLEH 122
FKPDATYHTM+++PCTS +SS+VPISHP+AL H HH HQ LEG+LLEH
Sbjct: 136 FKPDATYHTMNTIPCTSAASSSSVPISHPSALAGTHHHHHHHHHHHHQPHQALEGELLEH 195
Query: 123 ISPTLSVSGLGAPEHSVMPAQIHPHHLGAMGHLHQA-MGMSHPHTVAPHSAMPACLSDVE 181
+SP L++ + P+ +V+ H H+ M +HQA + M+H H + H C+SDV+
Sbjct: 196 LSPGLALGAMAGPDGAVVSTPAHAPHMATMNPMHQAALSMAHAHGLPSHMG---CMSDVD 252
Query: 182 SDPRELEAFAERFKQRRIKLGVTQADVGAALANLKIPGVGSLSQSTICRFESLTLSHNNM 241
+DPR+LEAFAERFKQRRIKLGVTQADVG+ALANLKIPGVGSLSQSTICRFESLTLSHNNM
Sbjct: 253 ADPRDLEAFAERFKQRRIKLGVTQADVGSALANLKIPGVGSLSQSTICRFESLTLSHNNM 312
Query: 242 IALKPVLQAWLEEAEAAYREKNSKPELFNGSERKRKRTSIAAPEKRSLEAYFAIQPRPSS 301
IALKP+LQAWLEEAE ++REK +KPELFNG+E+KRKRTSIAAPEKRSLEAYFAIQPRPSS
Sbjct: 313 IALKPILQAWLEEAEKSHREKLTKPELFNGAEKKRKRTSIAAPEKRSLEAYFAIQPRPSS 372
Query: 302 EKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKYSA 336
EKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKYSA
Sbjct: 373 EKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKYSA 407
>gi|110347449 POU domain, class 4, transcription factor 1 [Homo
sapiens]
Length = 419
Score = 441 bits (1133), Expect = e-124
Identities = 255/425 (60%), Positives = 285/425 (67%), Gaps = 93/425 (21%)
Query: 1 MMAMNSKQP-FGMHPVLQEPKFSSLHSGSEAMRRVCLPAPQLQGNIFGSFDESLLARAEA 59
MM+MNSKQP F MHP L E K+ SLHS SEA+RR CLP P LQ N+F S DE+LLARAEA
Sbjct: 1 MMSMNSKQPHFAMHPTLPEHKYPSLHSSSEAIRRACLPTPPLQSNLFASLDETLLARAEA 60
Query: 60 LAAVDI-VSHGKNHPFKPDATYHTMSSVPCTSTSSTVPISHPAALTSHPHHAVHQGLE-G 117
LAAVDI VS GK+HPFKPDATYHTM+SVPCTSTS TVP++H H HH HQ LE G
Sbjct: 61 LAAVDIAVSQGKSHPFKPDATYHTMNSVPCTSTS-TVPLAH-----HHHHHHHHQALEPG 114
Query: 118 DLLEHIS-PTLSV---------------------------------------------SG 131
DLL+HIS P+L++ G
Sbjct: 115 DLLDHISSPSLALMAGAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGPGGGGGGGPGGG 174
Query: 132 LGAPEHSVMPAQIHPH-HLGAMGHL---------HQAMGMSHPHTVAP---HSAMPAC-- 176
G P ++ HPH H+ ++GHL + G+ HP VA H A A
Sbjct: 175 GGGPGGGLLGGSAHPHPHMHSLGHLSHPAAAAAMNMPSGLPHPGLVAAAAHHGAAAAAAA 234
Query: 177 -----------------------LSDVESDPRELEAFAERFKQRRIKLGVTQADVGAALA 213
+ D ++DPRELEAFAERFKQRRIKLGVTQADVG+ALA
Sbjct: 235 AAAGQVAAASAAAAVVGAAGLASICDSDTDPRELEAFAERFKQRRIKLGVTQADVGSALA 294
Query: 214 NLKIPGVGSLSQSTICRFESLTLSHNNMIALKPVLQAWLEEAEAAYREKNSKPELFNGSE 273
NLKIPGVGSLSQSTICRFESLTLSHNNMIALKP+LQAWLEEAE A REK +KPELFNG E
Sbjct: 295 NLKIPGVGSLSQSTICRFESLTLSHNNMIALKPILQAWLEEAEGAQREKMNKPELFNGGE 354
Query: 274 RKRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMK 333
+KRKRTSIAAPEKRSLEAYFA+QPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMK
Sbjct: 355 KKRKRTSIAAPEKRSLEAYFAVQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMK 414
Query: 334 YSAVH 338
+SA +
Sbjct: 415 FSATY 419
>gi|51702521 POU domain, class 3, transcription factor 2 [Homo
sapiens]
Length = 443
Score = 159 bits (402), Expect = 3e-39
Identities = 100/246 (40%), Positives = 135/246 (54%), Gaps = 30/246 (12%)
Query: 108 HHAVHQGLEGDLLEHISPTLSVSGL--------GAPEHSVMPAQIHPHHLGAMGHLHQAM 159
H G L + P+ +V+G+ G H + A PHH H H
Sbjct: 176 HLPPSMGASNGGLLYSQPSFTVNGMLGAGGQPAGLHHHGLRDAHDEPHHADHHPHPH--- 232
Query: 160 GMSHPHTVAPHS-------AMPACLSDVESDPR-----ELEAFAERFKQRRIKLGVTQAD 207
SHPH P P D SD +LE FA++FKQRRIKLG TQAD
Sbjct: 233 --SHPHQQPPPPPPPQGPPGHPGAHHDPHSDEDTPTSDDLEQFAKQFKQRRIKLGFTQAD 290
Query: 208 VGAALANLKIPGVGSL-SQSTICRFESLTLSHNNMIALKPVLQAWLEEAEAAYREKNSKP 266
VG AL L G++ SQ+TICRFE+L LS NM LKP+L WLEEA+++ S
Sbjct: 291 VGLALGTL----YGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSSSGSPTSID 346
Query: 267 ELFNGSERKRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQR 326
++ +++KRTSI K +LE++F P+PS+++I ++A+ L L+K VVRVWFCN+R
Sbjct: 347 KIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITSLADSLQLEKEVVRVWFCNRR 406
Query: 327 QKQKRM 332
QK+KRM
Sbjct: 407 QKEKRM 412
>gi|110624765 POU domain, class 3, transcription factor 1 [Homo
sapiens]
Length = 451
Score = 155 bits (393), Expect = 4e-38
Identities = 100/237 (42%), Positives = 132/237 (55%), Gaps = 31/237 (13%)
Query: 108 HHAVHQ-GLEGDLLEHISPTLSVSGLGAPEHSVMPAQIHPHHLGAMGHLHQAMGMSHP-- 164
HHA+H+ G E L P L G H H G LH A HP
Sbjct: 188 HHALHEDGHEAQLEPSPPPHLGAHG-------------HAHGHAHAGGLHAAAAHLHPGA 234
Query: 165 ----HTVAPHSAMPACLSDVESDPRELEAFAERFKQRRIKLGVTQADVGAALANLKIPGV 220
+V HS A SD +LE FA++FKQRRIKLG TQADVG AL L
Sbjct: 235 GGGGSSVGEHSDEDAPSSD------DLEQFAKQFKQRRIKLGFTQADVGLALGTL----Y 284
Query: 221 GSL-SQSTICRFESLTLSHNNMIALKPVLQAWLEEAEAAYREKNSKPELFNGSERKRKRT 279
G++ SQ+TICRFE+L LS NM LKP+L WLEE +++ + ++ +++KRT
Sbjct: 285 GNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEETDSSSGSPTNLDKIAAQGRKRKKRT 344
Query: 280 SIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKYSA 336
SI K +LE++F P+PS+ +I +A+ L L+K VVRVWFCN+RQK+KRM +A
Sbjct: 345 SIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPAA 401
>gi|5453936 POU class 3 homeobox 3 [Homo sapiens]
Length = 500
Score = 154 bits (390), Expect = 8e-38
Identities = 91/199 (45%), Positives = 122/199 (61%), Gaps = 13/199 (6%)
Query: 137 HSVMPAQIHPHHLGAMGHLHQAMGMSHP--HTVAPHSAMPACLSDVESDPRELEAFAERF 194
H P HPHH H G + P ++ PHS SD +LE FA++F
Sbjct: 276 HHAHPHPPHPHHAQGPPHHGGGGGGAGPGLNSHDPHSDEDTPTSD------DLEQFAKQF 329
Query: 195 KQRRIKLGVTQADVGAALANLKIPGVGSL-SQSTICRFESLTLSHNNMIALKPVLQAWLE 253
KQRRIKLG TQADVG AL L G++ SQ+TICRFE+L LS NM LKP+L WLE
Sbjct: 330 KQRRIKLGFTQADVGLALGTL----YGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLE 385
Query: 254 EAEAAYREKNSKPELFNGSERKRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDL 313
EA+++ S ++ +++KRTSI K +LE++F P+PS+++I +A+ L L
Sbjct: 386 EADSSTGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITNLADSLQL 445
Query: 314 KKNVVRVWFCNQRQKQKRM 332
+K VVRVWFCN+RQK+KRM
Sbjct: 446 EKEVVRVWFCNRRQKEKRM 464
>gi|110624763 POU domain, class 3, transcription factor 4 [Homo
sapiens]
Length = 361
Score = 148 bits (374), Expect = 6e-36
Identities = 103/268 (38%), Positives = 140/268 (52%), Gaps = 33/268 (12%)
Query: 66 VSHGKNHPFKPDATYHTMSSVPCTSTSSTVPISHPAALTSHPHHAVHQGLEGDLLEHISP 125
V+H H P+A + + P ++S P + S P V +LEH
Sbjct: 101 VAHHSPHTNHPNAWGASPAPNPSITSSG-----QPLNVYSQPGFTV-----SGMLEH--- 147
Query: 126 TLSVSGLGAPEHSVMPAQIHPHHLGAMGHLHQAMGMSHPHTVAPHSAMPACLSDVESDPR 185
GL P + +HP H G H HS SD
Sbjct: 148 ----GGLTPPPAAASAQSLHPVLREPPDH-----GELGSHHCQDHSDEETPTSD------ 192
Query: 186 ELEAFAERFKQRRIKLGVTQADVGAALANLKIPGVGSL-SQSTICRFESLTLSHNNMIAL 244
ELE FA++FKQRRIKLG TQADVG AL L G++ SQ+TICRFE L LS NM L
Sbjct: 193 ELEQFAKQFKQRRIKLGFTQADVGLALGTL----YGNVFSQTTICRFEGLQLSFKNMCKL 248
Query: 245 KPVLQAWLEEAEAAYREKNSKPELFNGSERKRKRTSIAAPEKRSLEAYFAIQPRPSSEKI 304
KP+L WLEEA+++ S ++ +++KRTSI K LE +F P+P++++I
Sbjct: 249 KPLLNKWLEEADSSTGSPTSIDKIAAQGRKRKKRTSIEVSVKGVLETHFLKCPKPAAQEI 308
Query: 305 AAIAEKLDLKKNVVRVWFCNQRQKQKRM 332
+++A+ L L+K VVRVWFCN+RQK+KRM
Sbjct: 309 SSLADSLQLEKEVVRVWFCNRRQKEKRM 336
>gi|148664218 POU transcription factor [Homo sapiens]
Length = 436
Score = 143 bits (360), Expect = 2e-34
Identities = 97/231 (41%), Positives = 124/231 (53%), Gaps = 33/231 (14%)
Query: 113 QGLEGDLLEHISPTLSVSGLGAPEHSVMPAQIHPH-----HLGAMGHLHQAMGMSHPHTV 167
Q G LL P L+ G P + + + PH HL HL + G P
Sbjct: 131 QQQSGLLLPQTGPGLASQAFGHP--GLPGSSLEPHLEASQHLPVPKHLPSSGGADEP--- 185
Query: 168 APHSAMPACLSDVESDPRELEAFAERFKQRRIKLGVTQADVGAALANLKIPGVGSLSQST 227
SD ELE FA+ FKQRRIKLG TQ DVG A+ L SQ+T
Sbjct: 186 --------------SDLEELEKFAKTFKQRRIKLGFTQGDVGLAMGKLY---GNDFSQTT 228
Query: 228 ICRFESLTLSHNNMIALKPVLQAWLEEAEAAYREKN-----SKPELFNGSERKRK-RTSI 281
I RFE+L LS NM LKP+L+ WL +AE++ + + S P L RKRK RTSI
Sbjct: 229 ISRFEALNLSFKNMCKLKPLLEKWLNDAESSPSDPSVSTPSSYPSLSEVFGRKRKKRTSI 288
Query: 282 AAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 332
+ +LE F P+PSSE+I+ IAE+L ++K VVRVWFCN+RQK+KR+
Sbjct: 289 ETNIRLTLEKRFQDNPKPSSEEISMIAEQLSMEKEVVRVWFCNRRQKEKRI 339
>gi|170650730 pituitary specific transcription factor 1 isoform beta
[Homo sapiens]
Length = 317
Score = 139 bits (349), Expect = 5e-33
Identities = 84/156 (53%), Positives = 105/156 (67%), Gaps = 15/156 (9%)
Query: 185 RELEAFAERFKQRRIKLGVTQADVGAALANLKIPGVGS-LSQSTICRFESLTLSHNNMIA 243
RELE FA FK RRIKLG TQ +VG ALA + GS SQ+TICRFE+L LS N
Sbjct: 156 RELEKFANEFKVRRIKLGYTQTNVGEALAAVH----GSEFSQTTICRFENLQLSFKNACK 211
Query: 244 LKPVLQAWLEEAE---AAYREKNSKPELFNGSERKRKR-TSIAAPEKRSLEAYFAIQPRP 299
LK +L WLEEAE A Y EK +ERKRKR T+I+ K +LE +F Q +P
Sbjct: 212 LKAILSKWLEEAEQVGALYNEK------VGANERKRKRRTTISIAAKDALERHFGEQNKP 265
Query: 300 SSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKYS 335
SS++I +AE+L+L+K VVRVWFCN+RQ++KR+K S
Sbjct: 266 SSQEIMRMAEELNLEKEVVRVWFCNRRQREKRVKTS 301
>gi|4505955 pituitary specific transcription factor 1 isoform alpha
[Homo sapiens]
Length = 291
Score = 139 bits (349), Expect = 5e-33
Identities = 84/156 (53%), Positives = 105/156 (67%), Gaps = 15/156 (9%)
Query: 185 RELEAFAERFKQRRIKLGVTQADVGAALANLKIPGVGS-LSQSTICRFESLTLSHNNMIA 243
RELE FA FK RRIKLG TQ +VG ALA + GS SQ+TICRFE+L LS N
Sbjct: 130 RELEKFANEFKVRRIKLGYTQTNVGEALAAVH----GSEFSQTTICRFENLQLSFKNACK 185
Query: 244 LKPVLQAWLEEAE---AAYREKNSKPELFNGSERKRKR-TSIAAPEKRSLEAYFAIQPRP 299
LK +L WLEEAE A Y EK +ERKRKR T+I+ K +LE +F Q +P
Sbjct: 186 LKAILSKWLEEAEQVGALYNEK------VGANERKRKRRTTISIAAKDALERHFGEQNKP 239
Query: 300 SSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKYS 335
SS++I +AE+L+L+K VVRVWFCN+RQ++KR+K S
Sbjct: 240 SSQEIMRMAEELNLEKEVVRVWFCNRRQREKRVKTS 275
>gi|42476164 POU class 2 homeobox 1 [Homo sapiens]
Length = 743
Score = 134 bits (338), Expect = 9e-32
Identities = 76/158 (48%), Positives = 101/158 (63%), Gaps = 10/158 (6%)
Query: 182 SDPRELEAFAERFKQRRIKLGVTQADVGAALANLKIPGVGSLSQSTICRFESLTLSHNNM 241
SD ELE FA+ FKQRRIKLG TQ DVG A+ L SQ+TI RFE+L LS NM
Sbjct: 283 SDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLY---GNDFSQTTISRFEALNLSFKNM 339
Query: 242 IALKPVLQAWLEEAEAAYREKN-SKPELFNG------SERKRKRTSIAAPEKRSLEAYFA 294
LKP+L+ WL +AE + + S P N S R++KRTSI + +LE F
Sbjct: 340 CKLKPLLEKWLNDAENLSSDSSLSSPSALNSPGIEGLSRRRKKRTSIETNIRVALEKSFL 399
Query: 295 IQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 332
+P+SE+I IA++L+++K V+RVWFCN+RQK+KR+
Sbjct: 400 ENQKPTSEEITMIADQLNMEKEVIRVWFCNRRQKEKRI 437
>gi|4505959 POU domain, class 2, transcription factor 2 [Homo
sapiens]
Length = 463
Score = 134 bits (338), Expect = 9e-32
Identities = 81/177 (45%), Positives = 105/177 (59%), Gaps = 13/177 (7%)
Query: 166 TVAPHSAMPACLSDVESDPRELEAFAERFKQRRIKLGVTQADVGAALANLKIPGVGSLSQ 225
T P P + SD ELE FA FKQRRIKLG TQ DVG A+ L SQ
Sbjct: 166 TQPPKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLY---GNDFSQ 222
Query: 226 STICRFESLTLSHNNMIALKPVLQAWLEEAEAAYREKN-------SKPEL-FNG--SERK 275
+TI RFE+L LS NM LKP+L+ WL +AE + + S P L F+G R+
Sbjct: 223 TTISRFEALNLSFKNMCKLKPLLEKWLNDAETMSVDSSLPSPNQLSSPSLGFDGLPGRRR 282
Query: 276 RKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 332
+KRTSI + +LE F +P+SE+I IAE+L ++K V+RVWFCN+RQK+KR+
Sbjct: 283 KKRTSIETNVRFALEKSFLANQKPTSEEILLIAEQLHMEKEVIRVWFCNRRQKEKRI 339
>gi|116235491 POU domain, class 5, transcription factor 1 isoform 2
[Homo sapiens]
Length = 265
Score = 125 bits (315), Expect = 4e-29
Identities = 74/154 (48%), Positives = 100/154 (64%), Gaps = 5/154 (3%)
Query: 179 DVESDPRELEAFAERFKQRRIKLGVTQADVGAALANLKIPGVGSL-SQSTICRFESLTLS 237
D+++ +ELE FA+ KQ+RI LG TQADVG L L G + SQ+TICRFE+L LS
Sbjct: 43 DIKALQKELEQFAKLLKQKRITLGYTQADVGLTLGVL----FGKVFSQTTICRFEALQLS 98
Query: 238 HNNMIALKPVLQAWLEEAEAAYREKNSKPELFNGSERKRKRTSIAAPEKRSLEAYFAIQP 297
NM L+P+LQ W+EEA+ + RKRKRTSI + +LE F P
Sbjct: 99 FKNMCKLRPLLQKWVEEADNNENLQEICKAETLVQARKRKRTSIENRVRGNLENLFLQCP 158
Query: 298 RPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 331
+P+ ++I+ IA++L L+K+VVRVWFCN+RQK KR
Sbjct: 159 KPTLQQISHIAQQLGLEKDVVRVWFCNRRQKGKR 192
>gi|42560248 POU domain, class 5, transcription factor 1 isoform 1
[Homo sapiens]
Length = 360
Score = 125 bits (315), Expect = 4e-29
Identities = 74/154 (48%), Positives = 100/154 (64%), Gaps = 5/154 (3%)
Query: 179 DVESDPRELEAFAERFKQRRIKLGVTQADVGAALANLKIPGVGSL-SQSTICRFESLTLS 237
D+++ +ELE FA+ KQ+RI LG TQADVG L L G + SQ+TICRFE+L LS
Sbjct: 138 DIKALQKELEQFAKLLKQKRITLGYTQADVGLTLGVL----FGKVFSQTTICRFEALQLS 193
Query: 238 HNNMIALKPVLQAWLEEAEAAYREKNSKPELFNGSERKRKRTSIAAPEKRSLEAYFAIQP 297
NM L+P+LQ W+EEA+ + RKRKRTSI + +LE F P
Sbjct: 194 FKNMCKLRPLLQKWVEEADNNENLQEICKAETLVQARKRKRTSIENRVRGNLENLFLQCP 253
Query: 298 RPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 331
+P+ ++I+ IA++L L+K+VVRVWFCN+RQK KR
Sbjct: 254 KPTLQQISHIAQQLGLEKDVVRVWFCNRRQKGKR 287
>gi|227430410 POU class 5 homeobox 1B [Homo sapiens]
Length = 359
Score = 120 bits (302), Expect = 1e-27
Identities = 77/160 (48%), Positives = 102/160 (63%), Gaps = 8/160 (5%)
Query: 174 PACLSDVESDPRELEAFAERFKQRRIKLGVTQADVGAALANLKIPGVGSL-SQSTICRFE 232
P D+++ +ELE FA+ KQ+RI LG TQADVG L L G + SQ TICRFE
Sbjct: 133 PEKSQDIKALQKELEQFAKLLKQKRITLGYTQADVGLILGVL----FGKVFSQKTICRFE 188
Query: 233 SLTLSHNNMIALKPVLQAWLEEAEAAYR-EKNSKPELFNGSERKRKRTSIAAPEKRSLEA 291
+L LS NM L+P+LQ W+EEA+ ++ K E RKRKRTSI + +LE
Sbjct: 189 ALQLSFKNMCKLRPLLQKWVEEADNNENLQEICKAETLM-QARKRKRTSIENRVRGNLEN 247
Query: 292 YFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 331
F P+P+ + I+ IA++L L+K+VVRVWFCN+RQK KR
Sbjct: 248 LFLQCPKPTLQ-ISHIAQQLGLEKDVVRVWFCNRRQKGKR 286
>gi|223890225 POU class 6 homeobox 1 [Homo sapiens]
Length = 301
Score = 112 bits (281), Expect = 4e-25
Identities = 68/173 (39%), Positives = 96/173 (55%), Gaps = 14/173 (8%)
Query: 161 MSHPHTVAPHSAMPACLSDVESDPRELEAFAERFKQRRIKLGVTQADVGAALANLKIPGV 220
+S PHT + L + + E+ FA+ FK RR+ LG+TQ VG AL + P
Sbjct: 129 VSKPHTPS--------LDEDGINLEEIREFAKNFKIRRLSLGLTQTQVGQALTATEGP-- 178
Query: 221 GSLSQSTICRFESLTLSHNNMIALKPVLQAWLEEAEAAYREKNSKPELFNGSE---RKRK 277
+ SQS ICRFE L ++ + LKPVL+ WL EAE +E F G E ++++
Sbjct: 179 -AYSQSAICRFEKLDITPKSAQKLKPVLEKWLNEAELRNQEGQQNLMEFVGGEPSKKRKR 237
Query: 278 RTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQK 330
RTS +L AYF P P+ ++I IA++L+ + VVRVWFCN+RQ K
Sbjct: 238 RTSFTPQAIEALNAYFEKNPLPTGQEITEIAKELNYDREVVRVWFCNRRQTLK 290
>gi|23463326 POU domain class 5, transcription factor 2 [Homo
sapiens]
Length = 328
Score = 99.0 bits (245), Expect = 5e-21
Identities = 62/155 (40%), Positives = 90/155 (58%), Gaps = 7/155 (4%)
Query: 179 DVESDPRELEAFAERFKQRRIKLGVTQADVGAALANL--KIPGVGSLSQSTICRFESLTL 236
D+ +EL+ A+ +Q+R+ LG +QADVG A+ L K+ LSQ+TICRFE+ L
Sbjct: 118 DISGILKELQQLAKELRQKRLSLGYSQADVGIAVGALFGKV-----LSQTTICRFEAQQL 172
Query: 237 SHNNMIALKPVLQAWLEEAEAAYREKNSKPELFNGSERKRKRTSIAAPEKRSLEAYFAIQ 296
S NM L+P+L+ WL+E EA K E+ K +R S SLE +F
Sbjct: 173 SVANMWKLRPLLKKWLKEVEAENLLGLCKMEMILQQSGKWRRASRERRIGNSLEKFFQRC 232
Query: 297 PRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 331
P+P+ ++I+ IA L L+K+VVRVWF N+ + R
Sbjct: 233 PKPTPQQISHIAGCLQLQKDVVRVWFYNRSKMGSR 267
>gi|157743257 POU domain, class 6, transcription factor 2 [Homo
sapiens]
Length = 691
Score = 94.4 bits (233), Expect = 1e-19
Identities = 63/184 (34%), Positives = 88/184 (47%), Gaps = 42/184 (22%)
Query: 186 ELEAFAERFKQRRIKLGVTQADVGAALANLKIPGVGSLSQSTICR--------------- 230
E+ FA+ FK RR+ LG+TQ VG AL+ + P + SQS ICR
Sbjct: 483 EIREFAKAFKIRRLSLGLTQTQVGQALSATEGP---AYSQSAICRHTILRSHFFLPQEAQ 539
Query: 231 ---------------------FESLTLSHNNMIALKPVLQAWLEEAEAAYREKNSKPELF 269
FE L ++ + +KPVL+ W+ EAEA +R F
Sbjct: 540 ENTIASSLTAKLNPGLLYPARFEKLDITPKSAQKIKPVLERWMAEAEARHRAGMQNLTEF 599
Query: 270 NGSE---RKRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQR 326
GSE ++++RTS L A+F PS +++ IAEKL+ + VVRVWFCN+R
Sbjct: 600 IGSEPSKKRKRRTSFTPQALEILNAHFEKNTHPSGQEMTEIAEKLNYDREVVRVWFCNKR 659
Query: 327 QKQK 330
Q K
Sbjct: 660 QALK 663
>gi|11641283 LIM homeobox protein 5 [Homo sapiens]
Length = 402
Score = 55.1 bits (131), Expect = 9e-08
Identities = 26/71 (36%), Positives = 44/71 (61%)
Query: 263 NSKPELFNGSERKRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWF 322
N E +G++R+ RT+I A + +L+A FA P+P+ +A++ L V++VWF
Sbjct: 169 NENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWF 228
Query: 323 CNQRQKQKRMK 333
N+R K++RMK
Sbjct: 229 QNRRSKERRMK 239
>gi|30410785 LIM homeobox protein 1 [Homo sapiens]
Length = 406
Score = 52.8 bits (125), Expect = 4e-07
Identities = 24/63 (38%), Positives = 41/63 (65%)
Query: 271 GSERKRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQK 330
G++R+ RT+I A + +L+A FA P+P+ +A++ L V++VWF N+R K++
Sbjct: 177 GAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKER 236
Query: 331 RMK 333
RMK
Sbjct: 237 RMK 239
>gi|33569216 LIM homeobox 9 isoform 1 [Homo sapiens]
Length = 397
Score = 51.2 bits (121), Expect = 1e-06
Identities = 28/79 (35%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 254 EAEAAYREKNSKPELFNGSER-KRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLD 312
E EA + +++ +P + S++ KR RTS + R++++YFAI P ++ + +A+K
Sbjct: 248 ENEADHLDRDQQP--YPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTG 305
Query: 313 LKKNVVRVWFCNQRQKQKR 331
L K V++VWF N R K +R
Sbjct: 306 LTKRVLQVWFQNARAKFRR 324
Score = 28.5 bits (62), Expect = 8.9
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 245 KPVLQAWLEEAEAAYREKNSKPELFNGSERKRKRTSIAAP 284
K VLQ W + A A +R + E NG K TS+ AP
Sbjct: 308 KRVLQVWFQNARAKFRRNLLRQE--NGGVDKADGTSLPAP 345
>gi|62241033 LIM homeobox 9 isoform 2 [Homo sapiens]
Length = 388
Score = 51.2 bits (121), Expect = 1e-06
Identities = 28/79 (35%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 254 EAEAAYREKNSKPELFNGSER-KRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLD 312
E EA + +++ +P + S++ KR RTS + R++++YFAI P ++ + +A+K
Sbjct: 239 ENEADHLDRDQQP--YPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTG 296
Query: 313 LKKNVVRVWFCNQRQKQKR 331
L K V++VWF N R K +R
Sbjct: 297 LTKRVLQVWFQNARAKFRR 315
Score = 28.5 bits (62), Expect = 8.9
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 245 KPVLQAWLEEAEAAYREKNSKPELFNGSERKRKRTSIAAP 284
K VLQ W + A A +R + E NG K TS+ AP
Sbjct: 299 KRVLQVWFQNARAKFRRNLLRQE--NGGVDKADGTSLPAP 336
>gi|126090663 zinc finger homeodomain 4 [Homo sapiens]
Length = 3571
Score = 50.4 bits (119), Expect = 2e-06
Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 12/117 (10%)
Query: 231 FESLTLSHNNMIALKPVLQAWLEEAEA--------AYREKNSKPELFNGSERKRKRTSIA 282
F S+ + AL P L L + +A ++ P S+ KR RT I
Sbjct: 2033 FPSIMMQPVQHPALPPQLALQLPQMDALSADLTQLCQQQLGLDPNFLRHSQFKRPRTRIT 2092
Query: 283 APEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCN----QRQKQKRMKYS 335
+ + L AYF I PS E+I +AEK L + V++ WF N +RQ+ K Y+
Sbjct: 2093 DDQLKILRAYFDINNSPSEEQIQEMAEKSGLSQKVIKHWFRNTLFKERQRNKDSPYN 2149
Score = 43.5 bits (101), Expect = 3e-04
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 275 KRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKY 334
KR RT+I + L + + P+ + + IA ++ LKK VV+VWF N R ++++ ++
Sbjct: 2561 KRLRTTITPEQLEILYEKYLLDSNPTRKMLDHIAREVGLKKRVVQVWFQNTRARERKGQF 2620
Query: 335 SAV 337
AV
Sbjct: 2621 RAV 2623
Score = 41.2 bits (95), Expect = 0.001
Identities = 20/59 (33%), Positives = 35/59 (59%)
Query: 275 KRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMK 333
KR RT ++ + + L+A F+ P+ ++ + ++ L K VV+VWF N R K+K+ K
Sbjct: 2885 KRFRTQMSNLQLKVLKACFSDYRTPTMQECEMLGNEIGLPKRVVQVWFQNARAKEKKFK 2943
Score = 35.8 bits (81), Expect = 0.056
Identities = 17/58 (29%), Positives = 30/58 (51%)
Query: 274 RKRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 331
++ RT + R L+ +F P ++I ++ L+L V+ VWF N RQK ++
Sbjct: 2181 KRSSRTRFTDYQLRVLQDFFDTNAYPKDDEIEQLSTVLNLPTRVIVVWFQNARQKARK 2238
>gi|30795196 LIM homeobox protein 2 [Homo sapiens]
Length = 406
Score = 49.7 bits (117), Expect = 4e-06
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 270 NGSERKRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQ 329
+ + KR RTS + R++++YFAI P ++ + +A+K L K V++VWF N R K
Sbjct: 262 SSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKF 321
Query: 330 KR 331
+R
Sbjct: 322 RR 323
>gi|91208415 mesenchyme homeobox 1 isoform 3 [Homo sapiens]
Length = 139
Score = 47.4 bits (111), Expect = 2e-05
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 260 REKNSKPELFNGSERKRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVR 319
+E KPE S+ +++RT+ + R LEA FA + + IA LDL + V+
Sbjct: 44 QENRGKPE--GSSKARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVK 101
Query: 320 VWFCNQRQKQKRMK 333
VWF N+R K KR+K
Sbjct: 102 VWFQNRRMKWKRVK 115
>gi|4758710 mesenchyme homeobox 1 isoform 1 [Homo sapiens]
Length = 254
Score = 47.4 bits (111), Expect = 2e-05
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 260 REKNSKPELFNGSERKRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVR 319
+E KPE S+ +++RT+ + R LEA FA + + IA LDL + V+
Sbjct: 159 QENRGKPE--GSSKARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVK 216
Query: 320 VWFCNQRQKQKRMK 333
VWF N+R K KR+K
Sbjct: 217 VWFQNRRMKWKRVK 230
>gi|84105335 mesenchyme homeobox 2 [Homo sapiens]
Length = 304
Score = 46.6 bits (109), Expect = 3e-05
Identities = 56/197 (28%), Positives = 77/197 (39%), Gaps = 32/197 (16%)
Query: 145 HPHHLGAMGHLHQAMG-------MSHPHTVAPHSAMPACLSDVESDPRELEAFAERFKQR 197
H HH HQA+ MS P + A HS CL P EL +
Sbjct: 74 HHHHHHHQQQQHQALQTNWHLPQMSSPPSAARHSL---CLQPDSGGPPELGSSPPVLCSN 130
Query: 198 RIKLGVTQADVGAALANLKIPGVGSLSQSTICRFESLTLSHNNMIALKPVLQAWLEEAEA 257
LG + GAA A G + + E+ S + + E
Sbjct: 131 SSSLG-SSTPTGAACAP------GDYGRQALSPAEAEKRSGGKRKSDSS------DSQEG 177
Query: 258 AYR-EKNSKPELFNGSERKRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKN 316
Y+ E NSKP +++RT+ + R LEA FA + + IA LDL +
Sbjct: 178 NYKSEVNSKP--------RKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTER 229
Query: 317 VVRVWFCNQRQKQKRMK 333
V+VWF N+R K KR+K
Sbjct: 230 QVKVWFQNRRMKWKRVK 246
>gi|30023847 LIM homeobox protein 3 isoform a [Homo sapiens]
Length = 397
Score = 46.6 bits (109), Expect = 3e-05
Identities = 22/62 (35%), Positives = 37/62 (59%)
Query: 275 KRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKY 334
KR RT+I A + +L++ + P+P+ ++ + L VV+VWF N+R K+KR+K
Sbjct: 158 KRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKK 217
Query: 335 SA 336
A
Sbjct: 218 DA 219
>gi|7657303 LIM homeobox protein 3 isoform b [Homo sapiens]
Length = 402
Score = 46.6 bits (109), Expect = 3e-05
Identities = 22/62 (35%), Positives = 37/62 (59%)
Query: 275 KRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKY 334
KR RT+I A + +L++ + P+P+ ++ + L VV+VWF N+R K+KR+K
Sbjct: 163 KRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKK 222
Query: 335 SA 336
A
Sbjct: 223 DA 224
>gi|24307887 one cut homeobox 1 [Homo sapiens]
Length = 465
Score = 46.6 bits (109), Expect = 3e-05
Identities = 77/330 (23%), Positives = 130/330 (39%), Gaps = 71/330 (21%)
Query: 40 QLQGNIFGSFDESLLARAEALAAVDIVSHGKNHPFKPDATYHTMSSVPCTSTS------- 92
+L GN+ GSF +L+ LA+++ + P+ D S P +S+
Sbjct: 140 RLAGNVSGSF--TLMRDERGLASMNNLYT----PYHKDVAGMGQSLSPLSSSGLGSIHNS 193
Query: 93 --STVPISHPAA-------LTSH---PHHAVHQGLEGDLLEHISPTLS--VSGLGAPEHS 138
+HP A LT + HH G G+ +H++PT + V G P H
Sbjct: 194 QQGLPHYAHPGAAMPTDKMLTPNGFEAHHPAMLGRHGE--QHLTPTSAGMVPINGLPPH- 250
Query: 139 VMPAQIHPH-HLGAMGHLHQAMGMSHPHTVAPHSAMPACLSDVESDPRELEAFAERFKQR 197
HPH HL A GH Q +G + P+ ++ S+ ++E + +
Sbjct: 251 ------HPHAHLNAQGH-GQLLGTARE----PNPSVTGAQVSNGSNSGQMEEINTKEVAQ 299
Query: 198 RIKLGVTQADVGAALANLKIPGVGSLSQSTICRFES----LTLSHNNMIALKPVLQA--- 250
RI + + + A+ +Q +CR + L + LK +
Sbjct: 300 RITTELKRYSIPQAI----------FAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRR 349
Query: 251 ---WLEEAE---------AAYREKNSKPELFNGSERKRKRTSIAAPEKRSLEAYFAIQPR 298
WL+E E AA + K + G+ K+ R ++R+L A F R
Sbjct: 350 MWKWLQEPEFQRMSALRLAACKRKEQEHGKDRGNTPKKPRLVFTDVQRRTLHAIFKENKR 409
Query: 299 PSSEKIAAIAEKLDLKKNVVRVWFCNQRQK 328
PS E I+++L L+ + V +F N R++
Sbjct: 410 PSKELQITISQQLGLELSTVSNFFMNARRR 439
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.128 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,122,239
Number of Sequences: 37866
Number of extensions: 590727
Number of successful extensions: 2566
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 2204
Number of HSP's gapped (non-prelim): 397
length of query: 338
length of database: 18,247,518
effective HSP length: 103
effective length of query: 235
effective length of database: 14,347,320
effective search space: 3371620200
effective search space used: 3371620200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.