Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 4505959
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4505959 POU domain, class 2, transcription factor 2 [Homo
sapiens]
(463 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4505959 POU domain, class 2, transcription factor 2 [Homo sap... 943 0.0
gi|42476164 POU class 2 homeobox 1 [Homo sapiens] 346 2e-95
gi|148664218 POU transcription factor [Homo sapiens] 325 5e-89
gi|51702521 POU domain, class 3, transcription factor 2 [Homo sa... 203 3e-52
gi|110624765 POU domain, class 3, transcription factor 1 [Homo s... 198 8e-51
gi|110624763 POU domain, class 3, transcription factor 4 [Homo s... 195 6e-50
gi|5453936 POU class 3 homeobox 3 [Homo sapiens] 194 1e-49
gi|42560248 POU domain, class 5, transcription factor 1 isoform ... 175 7e-44
gi|116235491 POU domain, class 5, transcription factor 1 isoform... 168 8e-42
gi|227430410 POU class 5 homeobox 1B [Homo sapiens] 165 7e-41
gi|170650730 pituitary specific transcription factor 1 isoform b... 160 2e-39
gi|4505955 pituitary specific transcription factor 1 isoform alp... 160 2e-39
gi|223890225 POU class 6 homeobox 1 [Homo sapiens] 139 5e-33
gi|4505965 POU class 4 homeobox 3 [Homo sapiens] 134 1e-31
gi|110347449 POU domain, class 4, transcription factor 1 [Homo s... 133 3e-31
gi|110347455 Brn3b POU domain transcription factor [Homo sapiens] 131 1e-30
gi|23463326 POU domain class 5, transcription factor 2 [Homo sap... 121 2e-27
gi|157743257 POU domain, class 6, transcription factor 2 [Homo s... 105 7e-23
gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 54 2e-07
gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 54 2e-07
gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 54 2e-07
gi|162951873 ventral anterior homeobox 1 isoform a [Homo sapiens] 54 2e-07
gi|4557489 cone-rod homeobox protein [Homo sapiens] 52 9e-07
gi|30410785 LIM homeobox protein 1 [Homo sapiens] 52 1e-06
gi|50345997 E1A binding protein p300 [Homo sapiens] 51 2e-06
gi|11641283 LIM homeobox protein 5 [Homo sapiens] 51 2e-06
gi|148746211 NK2 transcription factor related, locus 3 [Homo sap... 51 3e-06
gi|118498345 AT-binding transcription factor 1 [Homo sapiens] 50 4e-06
gi|169881277 PROP paired-like homeobox 1 [Homo sapiens] 50 6e-06
gi|20070107 orthodenticle homeobox 1 [Homo sapiens] 49 7e-06
>gi|4505959 POU domain, class 2, transcription factor 2 [Homo
sapiens]
Length = 463
Score = 943 bits (2438), Expect = 0.0
Identities = 463/463 (100%), Positives = 463/463 (100%)
Query: 1 MVHSSMGAPEIRMSKPLEAEKQGLDSPSEHTDTERNGPDTNHQNPQNKTSPFSVSPTGPS 60
MVHSSMGAPEIRMSKPLEAEKQGLDSPSEHTDTERNGPDTNHQNPQNKTSPFSVSPTGPS
Sbjct: 1 MVHSSMGAPEIRMSKPLEAEKQGLDSPSEHTDTERNGPDTNHQNPQNKTSPFSVSPTGPS 60
Query: 61 TKIKAEDPSGDSAPAAPLPPQPAQPHLPQAQLMLTGSQLAGDIQQLLQLQQLVLVPGHHL 120
TKIKAEDPSGDSAPAAPLPPQPAQPHLPQAQLMLTGSQLAGDIQQLLQLQQLVLVPGHHL
Sbjct: 61 TKIKAEDPSGDSAPAAPLPPQPAQPHLPQAQLMLTGSQLAGDIQQLLQLQQLVLVPGHHL 120
Query: 121 QPPAQFLLPQAQQSQPGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQPPKCLEPPSHPEE 180
QPPAQFLLPQAQQSQPGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQPPKCLEPPSHPEE
Sbjct: 121 QPPAQFLLPQAQQSQPGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQPPKCLEPPSHPEE 180
Query: 181 PSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCK 240
PSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCK
Sbjct: 181 PSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCK 240
Query: 241 LKPLLEKWLNDAETMSVDSSLPSPNQLSSPSLGFDGLPGRRRKKRTSIETNVRFALEKSF 300
LKPLLEKWLNDAETMSVDSSLPSPNQLSSPSLGFDGLPGRRRKKRTSIETNVRFALEKSF
Sbjct: 241 LKPLLEKWLNDAETMSVDSSLPSPNQLSSPSLGFDGLPGRRRKKRTSIETNVRFALEKSF 300
Query: 301 LANQKPTSEEILLIAEQLHMEKEVIRVWFCNRRQKEKRINPCSAAPMLPSPGKPASYSPH 360
LANQKPTSEEILLIAEQLHMEKEVIRVWFCNRRQKEKRINPCSAAPMLPSPGKPASYSPH
Sbjct: 301 LANQKPTSEEILLIAEQLHMEKEVIRVWFCNRRQKEKRINPCSAAPMLPSPGKPASYSPH 360
Query: 361 MVTPQGGAGTLPLSQASSSLSTTVTTLSSAVGTLHPSRTAGGGGGGGGAAPPLNSIPSVT 420
MVTPQGGAGTLPLSQASSSLSTTVTTLSSAVGTLHPSRTAGGGGGGGGAAPPLNSIPSVT
Sbjct: 361 MVTPQGGAGTLPLSQASSSLSTTVTTLSSAVGTLHPSRTAGGGGGGGGAAPPLNSIPSVT 420
Query: 421 PPPPATTNSTNPSPQGSHSAIGLSGLNPSTGPGLWWNPAPYQP 463
PPPPATTNSTNPSPQGSHSAIGLSGLNPSTGPGLWWNPAPYQP
Sbjct: 421 PPPPATTNSTNPSPQGSHSAIGLSGLNPSTGPGLWWNPAPYQP 463
>gi|42476164 POU class 2 homeobox 1 [Homo sapiens]
Length = 743
Score = 346 bits (888), Expect = 2e-95
Identities = 224/407 (55%), Positives = 261/407 (64%), Gaps = 52/407 (12%)
Query: 88 PQAQLMLTGS-QLAGDIQQL-------LQLQQLVLV-PGHHLQPPAQFLLPQAQQSQPGL 138
P Q+ L+ Q+A D+QQL L LQQ VLV P +LQP AQF++ Q Q Q GL
Sbjct: 160 PMTQIPLSQPIQIAQDLQQLQQLQQQNLNLQQFVLVHPTTNLQP-AQFIISQTPQGQQGL 218
Query: 139 LPTPNLF-QLPQQTQGALLTSQPRAGLPTQP---------------------PKCLEPPS 176
L NL QLPQQ+Q LL SQP L +QP PK ++ PS
Sbjct: 219 LQAQNLLTQLPQQSQANLLQSQPSITLTSQPATPTRTIAATPIQTLPQSQSTPKRIDTPS 278
Query: 177 HPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFK 236
EEPSDLEELEQFA+TFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFK
Sbjct: 279 L-EEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFK 337
Query: 237 NMCKLKPLLEKWLNDAETMSVDSSLPSPNQLSSPSLGFDGLPGRRRKKRTSIETNVRFAL 296
NMCKLKPLLEKWLNDAE +S DSSL SP+ L+SP G +GL RRRKKRTSIETN+R AL
Sbjct: 338 NMCKLKPLLEKWLNDAENLSSDSSLSSPSALNSP--GIEGL-SRRRKKRTSIETNIRVAL 394
Query: 297 EKSFLANQKPTSEEILLIAEQLHMEKEVIRVWFCNRRQKEKRINPCSAA--------PML 348
EKSFL NQKPTSEEI +IA+QL+MEKEVIRVWFCNRRQKEKRINP S+ +
Sbjct: 395 EKSFLENQKPTSEEITMIADQLNMEKEVIRVWFCNRRQKEKRINPPSSGGTSSSPIKAIF 454
Query: 349 PSPGKPASYSPHMVTPQGGAGTLPLSQASSSLSTTVTTLSSAVGTLHPSRTAGGGGGGGG 408
PSP + +P +VT A TL +S S VT L S GT T+
Sbjct: 455 PSPTSLVATTPSLVT-SSAATTLTVSPVLPLTSAAVTNL-SVTGT--SDTTSNNTATVIS 510
Query: 409 AAPPLNSI---PSVTPPPPATTNSTNPSPQGSHSAIGLSGLNPSTGP 452
APP +S PS++P P A+ ST+ + S ++ + P + P
Sbjct: 511 TAPPASSAVTSPSLSPSPSASA-STSEASSASETSTTQTTSTPLSSP 556
Score = 31.2 bits (69), Expect = 2.1
Identities = 40/122 (32%), Positives = 46/122 (37%), Gaps = 18/122 (14%)
Query: 343 SAAPMLPSPGKPASYSPHMVTPQGGAGTLPLSQAS--SSLSTTVTTLSSAVGTLHPSRTA 400
S AP S S SP +P A T S AS S+ TT T LSS +GT TA
Sbjct: 510 STAPPASSAVTSPSLSP---SPSASASTSEASSASETSTTQTTSTPLSSPLGTSQVMVTA 566
Query: 401 GG------GGGGGGAAPPLNSIPSVTPPPPATTNSTNPS---PQGSHSAIGLSGLNPSTG 451
G G A P N+ + A NPS P + L LNP T
Sbjct: 567 SGLQTAAAAALQGAAQLPANASLAAM----AAAAGLNPSLMAPSQFAAGGALLSLNPGTL 622
Query: 452 PG 453
G
Sbjct: 623 SG 624
>gi|148664218 POU transcription factor [Homo sapiens]
Length = 436
Score = 325 bits (833), Expect = 5e-89
Identities = 220/448 (49%), Positives = 263/448 (58%), Gaps = 57/448 (12%)
Query: 28 SEHTDTERNGPDTNHQNPQNKTSPFSVSPTGP------STKIKAEDPSGDSAPAAPLPPQ 81
S HTD + +G + + ++ S V P + +IK ED S DS L +
Sbjct: 6 SMHTDIKMSGDVADSTDARSTLS--QVEPGNDRNGLDFNRQIKTEDLS-DSLQQT-LSHR 61
Query: 82 PAQPHLPQAQLMLTGSQLAG-------DIQQLLQLQQLVLVPGHHLQPPAQFLLPQAQQS 134
P HL Q M++G+Q++G D+ L LQQLVLVPGH LQ +QFLL Q Q
Sbjct: 62 PC--HLSQGPAMMSGNQMSGLNASPCQDMASLHPLQQLVLVPGH-LQSVSQFLLSQTQPG 118
Query: 135 QPGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQ-------PPKCLEP----------PSH 177
Q GL PNL PQQ G LL Q GL +Q P LEP P H
Sbjct: 119 QQGL--QPNLLPFPQQQSGLLLP-QTGPGLASQAFGHPGLPGSSLEPHLEASQHLPVPKH 175
Query: 178 ------PEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL 231
+EPSDLEELE+FA+TFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL
Sbjct: 176 LPSSGGADEPSDLEELEKFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL 235
Query: 232 NLSFKNMCKLKPLLEKWLNDAETMSVDSSLPSPNQLSSPSLGFDGLPGRRRKKRTSIETN 291
NLSFKNMCKLKPLLEKWLNDAE+ D S+ +P+ S S F GR+RKKRTSIETN
Sbjct: 236 NLSFKNMCKLKPLLEKWLNDAESSPSDPSVSTPSSYPSLSEVF----GRKRKKRTSIETN 291
Query: 292 VRFALEKSFLANQKPTSEEILLIAEQLHMEKEVIRVWFCNRRQKEKRINPCSAAPMLPSP 351
+R LEK F N KP+SEEI +IAEQL MEKEV+RVWFCNRRQKEKRIN C A +P
Sbjct: 292 IRLTLEKRFQDNPKPSSEEISMIAEQLSMEKEVVRVWFCNRRQKEKRIN-CPVA----TP 346
Query: 352 GKPASYSPHMVTPQGGAGTLPLSQASSSLSTTVTTLSSAVGTLHPSRTAGGGGGGGGAAP 411
KP Y+ +V+P G G L + S++ TVT+ S PS G A
Sbjct: 347 IKPPVYNSRLVSPSGSLGPLSVPPVHSTMPGTVTSSCSPGNNSRPSSPGSGLHASSPTAS 406
Query: 412 PLNSIPSVTPPPPATTNSTNPSPQGSHS 439
NS +V ++ NS+ + +HS
Sbjct: 407 QNNSKAAVN--SASSFNSSGSWYRWNHS 432
>gi|51702521 POU domain, class 3, transcription factor 2 [Homo
sapiens]
Length = 443
Score = 203 bits (516), Expect = 3e-52
Identities = 147/358 (41%), Positives = 174/358 (48%), Gaps = 58/358 (16%)
Query: 50 SPFSVSPTG-PSTKIKAEDPSGDSAPAAPLPPQPAQPHLPQAQLMLTGSQLAGDIQQLLQ 108
SP+S SP G P K G P Q H Q Q Q QQ +
Sbjct: 91 SPWSTSPLGQPDIKPSVVVQQGGRGDELHGPGALQQQHQQQQQQQQQQQQQQQQQQQQQR 150
Query: 109 LQQLVLVPGHHLQPPAQFLLPQAQQSQPGLLPTPN---LFQLPQQTQGALLTS--QPRAG 163
LV +H P + A P + N L+ P T +L + QP AG
Sbjct: 151 PPHLVHHAANHHPGPGAWRSAAAAAHLPPSMGASNGGLLYSQPSFTVNGMLGAGGQP-AG 209
Query: 164 L----------------------------PTQPPKCLEPPSHP---------EEPSDLEE 186
L P PP PP HP E+ ++
Sbjct: 210 LHHHGLRDAHDEPHHADHHPHPHSHPHQQPPPPPPPQGPPGHPGAHHDPHSDEDTPTSDD 269
Query: 187 LEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLE 246
LEQFA+ FKQRRIKLGFTQ DVGLA+G LYGN FSQTTI RFEAL LSFKNMCKLKPLL
Sbjct: 270 LEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLN 329
Query: 247 KWLNDAETMSVDSSLPSPNQLSSPSLGFDGLPGRRRKKRTSIETNVRFALEKSFLANQKP 306
KWL +A DSS SP + + GR+RKKRTSIE +V+ ALE FL KP
Sbjct: 330 KWLEEA-----DSSSGSPTSIDKIA-----AQGRKRKKRTSIEVSVKGALESHFLKCPKP 379
Query: 307 TSEEILLIAEQLHMEKEVIRVWFCNRRQKEKRINPCSAAPMLPSPGKPASYSPHMVTP 364
+++EI +A+ L +EKEV+RVWFCNRRQKEKR+ P P PG Y TP
Sbjct: 380 SAQEITSLADSLQLEKEVVRVWFCNRRQKEKRMTP----PGGTLPGAEDVYGGSRDTP 433
>gi|110624765 POU domain, class 3, transcription factor 1 [Homo
sapiens]
Length = 451
Score = 198 bits (504), Expect = 8e-51
Identities = 122/246 (49%), Positives = 140/246 (56%), Gaps = 58/246 (23%)
Query: 179 EEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM 238
E+ ++LEQFA+ FKQRRIKLGFTQ DVGLA+G LYGN FSQTTI RFEAL LSFKNM
Sbjct: 247 EDAPSSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNM 306
Query: 239 CKLKPLLEKWLNDAETMSVDSSLPSPNQLSSPSLGFDGLPGRRRKKRTSIETNVRFALEK 298
CKLKPLL KWL + DSS SP L + GR+RKKRTSIE V+ ALE
Sbjct: 307 CKLKPLLNKWLEET-----DSSSGSPTNLDKIAA-----QGRKRKKRTSIEVGVKGALES 356
Query: 299 SFLANQKPTSEEILLIAEQLHMEKEVIRVWFCNRRQKEKRINPCSAAPMLPSPGKPASYS 358
FL KP++ EI +A+ L +EKEV+RVWFCNRRQKEKR+
Sbjct: 357 HFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRM------------------- 397
Query: 359 PHMVTPQGGAGTLPLSQASSSLSTTVTTLSSAVGTLHPSRTAGGGGGGGGAAPPLNSIPS 418
TP GAG P+ A G L P GGGGA+P PS
Sbjct: 398 ----TPAAGAGHPPMDDVY------------APGELGP--------GGGGASP-----PS 428
Query: 419 VTPPPP 424
PPPP
Sbjct: 429 APPPPP 434
>gi|110624763 POU domain, class 3, transcription factor 4 [Homo
sapiens]
Length = 361
Score = 195 bits (496), Expect = 6e-50
Identities = 114/220 (51%), Positives = 132/220 (60%), Gaps = 28/220 (12%)
Query: 134 SQPGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQPPKCLEPPSH------------PEEP 181
SQPG + L G L A + P EPP H EE
Sbjct: 135 SQPGFTVSGML------EHGGLTPPPAAASAQSLHPVLREPPDHGELGSHHCQDHSDEET 188
Query: 182 SDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKL 241
+ELEQFA+ FKQRRIKLGFTQ DVGLA+G LYGN FSQTTI RFE L LSFKNMCKL
Sbjct: 189 PTSDELEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEGLQLSFKNMCKL 248
Query: 242 KPLLEKWLNDAETMSVDSSLPSPNQLSSPSLGFDGLPGRRRKKRTSIETNVRFALEKSFL 301
KPLL KWL +A DSS SP + + GR+RKKRTSIE +V+ LE FL
Sbjct: 249 KPLLNKWLEEA-----DSSTGSPTSIDKIA-----AQGRKRKKRTSIEVSVKGVLETHFL 298
Query: 302 ANQKPTSEEILLIAEQLHMEKEVIRVWFCNRRQKEKRINP 341
KP ++EI +A+ L +EKEV+RVWFCNRRQKEKR+ P
Sbjct: 299 KCPKPAAQEISSLADSLQLEKEVVRVWFCNRRQKEKRMTP 338
>gi|5453936 POU class 3 homeobox 3 [Homo sapiens]
Length = 500
Score = 194 bits (494), Expect = 1e-49
Identities = 102/167 (61%), Positives = 121/167 (72%), Gaps = 10/167 (5%)
Query: 175 PSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLS 234
P E+ ++LEQFA+ FKQRRIKLGFTQ DVGLA+G LYGN FSQTTI RFEAL LS
Sbjct: 310 PHSDEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLS 369
Query: 235 FKNMCKLKPLLEKWLNDAETMSVDSSLPSPNQLSSPSLGFDGLPGRRRKKRTSIETNVRF 294
FKNMCKLKPLL KWL +A DSS SP + + GR+RKKRTSIE +V+
Sbjct: 370 FKNMCKLKPLLNKWLEEA-----DSSTGSPTSIDKIA-----AQGRKRKKRTSIEVSVKG 419
Query: 295 ALEKSFLANQKPTSEEILLIAEQLHMEKEVIRVWFCNRRQKEKRINP 341
ALE FL KP+++EI +A+ L +EKEV+RVWFCNRRQKEKR+ P
Sbjct: 420 ALESHFLKCPKPSAQEITNLADSLQLEKEVVRVWFCNRRQKEKRMTP 466
>gi|42560248 POU domain, class 5, transcription factor 1 isoform 1
[Homo sapiens]
Length = 360
Score = 175 bits (444), Expect = 7e-44
Identities = 118/279 (42%), Positives = 151/279 (54%), Gaps = 51/279 (18%)
Query: 152 QGALLTSQPR--AGLPTQ-------PPKCLEPPS-----------HPEEPSDLE----EL 187
QG L TSQP AG+ + P C P +PEE D++ EL
Sbjct: 87 QGGLETSQPEGEAGVGVESNSDGASPEPCTVTPGAVKLEKEKLEQNPEESQDIKALQKEL 146
Query: 188 EQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEK 247
EQFA+ KQ+RI LG+TQ DVGL +G L+G FSQTTI RFEAL LSFKNMCKL+PLL+K
Sbjct: 147 EQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTICRFEALQLSFKNMCKLRPLLQK 206
Query: 248 WLNDAETMSVDSSLPSPNQLSSPSLGFDGLPGRRRKKRTSIETNVRFALEKSFLANQKPT 307
W+ +A+ N+ + L R++KRTSIE VR LE FL KPT
Sbjct: 207 WVEEADN----------NENLQEICKAETLVQARKRKRTSIENRVRGNLENLFLQCPKPT 256
Query: 308 SEEILLIAEQLHMEKEVIRVWFCNRRQKEKRINPCSA------APMLPSPGKPASY---- 357
++I IA+QL +EK+V+RVWFCNRRQK KR + A A P G P S+
Sbjct: 257 LQQISHIAQQLGLEKDVVRVWFCNRRQKGKRSSSDYAQREDFEAAGSPFSGGPVSFPLAP 316
Query: 358 SPHMVTPQGGA-------GTLPLSQASSSLSTTVTTLSS 389
PH TP G+ ++P + + +VTTL S
Sbjct: 317 GPHFGTPGYGSPHFTALYSSVPFPEGEAFPPVSVTTLGS 355
>gi|116235491 POU domain, class 5, transcription factor 1 isoform 2
[Homo sapiens]
Length = 265
Score = 168 bits (426), Expect = 8e-42
Identities = 102/222 (45%), Positives = 131/222 (59%), Gaps = 27/222 (12%)
Query: 185 EELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPL 244
+ELEQFA+ KQ+RI LG+TQ DVGL +G L+G FSQTTI RFEAL LSFKNMCKL+PL
Sbjct: 49 KELEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTICRFEALQLSFKNMCKLRPL 108
Query: 245 LEKWLNDAETMSVDSSLPSPNQLSSPSLGFDGLPGRRRKKRTSIETNVRFALEKSFLANQ 304
L+KW+ +A+ N+ + L R++KRTSIE VR LE FL
Sbjct: 109 LQKWVEEADN----------NENLQEICKAETLVQARKRKRTSIENRVRGNLENLFLQCP 158
Query: 305 KPTSEEILLIAEQLHMEKEVIRVWFCNRRQKEKRINPCSA------APMLPSPGKPASY- 357
KPT ++I IA+QL +EK+V+RVWFCNRRQK KR + A A P G P S+
Sbjct: 159 KPTLQQISHIAQQLGLEKDVVRVWFCNRRQKGKRSSSDYAQREDFEAAGSPFSGGPVSFP 218
Query: 358 ---SPHMVTPQGGA-------GTLPLSQASSSLSTTVTTLSS 389
PH TP G+ ++P + + +VTTL S
Sbjct: 219 LAPGPHFGTPGYGSPHFTALYSSVPFPEGEAFPPVSVTTLGS 260
>gi|227430410 POU class 5 homeobox 1B [Homo sapiens]
Length = 359
Score = 165 bits (418), Expect = 7e-41
Identities = 116/279 (41%), Positives = 148/279 (53%), Gaps = 52/279 (18%)
Query: 152 QGALLTSQPR--AGLPTQ-------PPKCLEPPS-----------HPEEPSDLE----EL 187
QG L TSQP AG+ + P C PP +PE+ D++ EL
Sbjct: 87 QGGLETSQPESEAGVGVESNSNGASPEPCTVPPGAVKLEKEKLEQNPEKSQDIKALQKEL 146
Query: 188 EQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEK 247
EQFA+ KQ+RI LG+TQ DVGL +G L+G FSQ TI RFEAL LSFKNMCKL+PLL+K
Sbjct: 147 EQFAKLLKQKRITLGYTQADVGLILGVLFGKVFSQKTICRFEALQLSFKNMCKLRPLLQK 206
Query: 248 WLNDAETMSVDSSLPSPNQLSSPSLGFDGLPGRRRKKRTSIETNVRFALEKSFLANQKPT 307
W+ +A+ N+ + L R++KRTSIE VR LE FL KPT
Sbjct: 207 WVEEADN----------NENLQEICKAETLMQARKRKRTSIENRVRGNLENLFLQCPKPT 256
Query: 308 SEEILLIAEQLHMEKEVIRVWFCNRRQKEKRINPCSA------APMLPSPGKPASY---- 357
+I IA+QL +EK+V+RVWFCNRRQK KR + A A P G P S+
Sbjct: 257 L-QISHIAQQLGLEKDVVRVWFCNRRQKGKRSSSDYAQREDFEAAGSPFSGGPVSFPPAP 315
Query: 358 SPHMVTPQGGA-------GTLPLSQASSSLSTTVTTLSS 389
PH TP G+ ++P + +V TL S
Sbjct: 316 GPHFGTPGYGSPHFTALYSSVPFPEGEVFPPVSVITLGS 354
>gi|170650730 pituitary specific transcription factor 1 isoform beta
[Homo sapiens]
Length = 317
Score = 160 bits (405), Expect = 2e-39
Identities = 94/211 (44%), Positives = 129/211 (61%), Gaps = 25/211 (11%)
Query: 141 TPNLFQLPQQTQG--------ALLTSQPRAGLPTQP----PKCLEPPSHPEEPSDLEELE 188
TP L++ P T LL P A Q K +E P + P ++ ELE
Sbjct: 101 TPCLYKFPDHTLSHGFPPIHQPLLAEDPTAADFKQELRRKSKLVEEPIDMDSP-EIRELE 159
Query: 189 QFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEKW 248
+FA FK RRIKLG+TQ +VG A+ ++G++FSQTTI RFE L LSFKN CKLK +L KW
Sbjct: 160 KFANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFENLQLSFKNACKLKAILSKW 219
Query: 249 LNDAETMSVDSSLPSPNQLSSPSLGFDGLPGRRRKKRTSIETNVRFALEKSFLANQKPTS 308
L +AE + L + +G + R+RK+RT+I + ALE+ F KP+S
Sbjct: 220 LEEAEQVGA---------LYNEKVGAN---ERKRKRRTTISIAAKDALERHFGEQNKPSS 267
Query: 309 EEILLIAEQLHMEKEVIRVWFCNRRQKEKRI 339
+EI+ +AE+L++EKEV+RVWFCNRRQ+EKR+
Sbjct: 268 QEIMRMAEELNLEKEVVRVWFCNRRQREKRV 298
>gi|4505955 pituitary specific transcription factor 1 isoform alpha
[Homo sapiens]
Length = 291
Score = 160 bits (405), Expect = 2e-39
Identities = 94/211 (44%), Positives = 129/211 (61%), Gaps = 25/211 (11%)
Query: 141 TPNLFQLPQQTQG--------ALLTSQPRAGLPTQP----PKCLEPPSHPEEPSDLEELE 188
TP L++ P T LL P A Q K +E P + P ++ ELE
Sbjct: 75 TPCLYKFPDHTLSHGFPPIHQPLLAEDPTAADFKQELRRKSKLVEEPIDMDSP-EIRELE 133
Query: 189 QFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEKW 248
+FA FK RRIKLG+TQ +VG A+ ++G++FSQTTI RFE L LSFKN CKLK +L KW
Sbjct: 134 KFANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFENLQLSFKNACKLKAILSKW 193
Query: 249 LNDAETMSVDSSLPSPNQLSSPSLGFDGLPGRRRKKRTSIETNVRFALEKSFLANQKPTS 308
L +AE + L + +G + R+RK+RT+I + ALE+ F KP+S
Sbjct: 194 LEEAEQVGA---------LYNEKVGAN---ERKRKRRTTISIAAKDALERHFGEQNKPSS 241
Query: 309 EEILLIAEQLHMEKEVIRVWFCNRRQKEKRI 339
+EI+ +AE+L++EKEV+RVWFCNRRQ+EKR+
Sbjct: 242 QEIMRMAEELNLEKEVVRVWFCNRRQREKRV 272
>gi|223890225 POU class 6 homeobox 1 [Homo sapiens]
Length = 301
Score = 139 bits (350), Expect = 5e-33
Identities = 101/275 (36%), Positives = 138/275 (50%), Gaps = 26/275 (9%)
Query: 75 AAPLPPQPAQPHLPQAQLMLTGSQLAGDIQQLLQLQQLVLVPGHHLQPPAQFLLPQAQQS 134
AAP P Q Q QL+L Q + L L P ++ P+ P +
Sbjct: 30 AAPAPAQSLQVQAVTPQLLLNAQG-----QVIATLASSPLPPPVAVRKPSTPESPAKSEV 84
Query: 135 QPGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQPPKCLEPP------SHPEEPS------ 182
QP + PTP + Q ++P A P P C E P S P PS
Sbjct: 85 QP-IQPTPTVPQPAVVIASPAPAAKPSASAPI-PITCSETPTVSQLVSKPHTPSLDEDGI 142
Query: 183 DLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLK 242
+LEE+ +FA+ FK RR+ LG TQ VG A+ G +SQ+ I RFE L+++ K+ KLK
Sbjct: 143 NLEEIREFAKNFKIRRLSLGLTQTQVGQALTATEGPAYSQSAICRFEKLDITPKSAQKLK 202
Query: 243 PLLEKWLNDAETMSVDSSLPSPNQLSSPSLGFDGLPGRRRKKRTSIETNVRFALEKSFLA 302
P+LEKWLN+AE + + Q +G G P ++RK+RTS AL F
Sbjct: 203 PVLEKWLNEAELRNQEG-----QQNLMEFVG--GEPSKKRKRRTSFTPQAIEALNAYFEK 255
Query: 303 NQKPTSEEILLIAEQLHMEKEVIRVWFCNRRQKEK 337
N PT +EI IA++L+ ++EV+RVWFCNRRQ K
Sbjct: 256 NPLPTGQEITEIAKELNYDREVVRVWFCNRRQTLK 290
>gi|4505965 POU class 4 homeobox 3 [Homo sapiens]
Length = 338
Score = 134 bits (338), Expect = 1e-31
Identities = 81/177 (45%), Positives = 105/177 (59%), Gaps = 13/177 (7%)
Query: 166 TQPPKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLY---GNDFSQ 222
T P P + SD ELE FA FKQRRIKLG TQ DVG A+ L SQ
Sbjct: 166 TVAPHSAMPACLSDVESDPRELEAFAERFKQRRIKLGVTQADVGAALANLKIPGVGSLSQ 225
Query: 223 TTISRFEALNLSFKNMCKLKPLLEKWLNDAETMSVDSSLPSPNQLSSPSLGFDGLPGRRR 282
+TI RFE+L LS NM LKP+L+ WL +AE + + S P L F+G R+
Sbjct: 226 STICRFESLTLSHNNMIALKPVLQAWLEEAEAAYREKN-------SKPEL-FNG--SERK 275
Query: 283 KKRTSIETNVRFALEKSFLANQKPTSEEILLIAEQLHMEKEVIRVWFCNRRQKEKRI 339
+KRTSI + +LE F +P+SE+I IAE+L ++K V+RVWFCN+RQK+KR+
Sbjct: 276 RKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 332
>gi|110347449 POU domain, class 4, transcription factor 1 [Homo
sapiens]
Length = 419
Score = 133 bits (335), Expect = 3e-31
Identities = 76/164 (46%), Positives = 104/164 (63%), Gaps = 13/164 (7%)
Query: 179 EEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLY---GNDFSQTTISRFEALNLSF 235
+ +D ELE FA FKQRRIKLG TQ DVG A+ L SQ+TI RFE+L LS
Sbjct: 260 DSDTDPRELEAFAERFKQRRIKLGVTQADVGSALANLKIPGVGSLSQSTICRFESLTLSH 319
Query: 236 KNMCKLKPLLEKWLNDAETMSVDSSLPSPNQLSSPSLGFDGLPGRRRKKRTSIETNVRFA 295
NM LKP+L+ WL +AE + +++ P L F+G G +++KRTSI + +
Sbjct: 320 NNMIALKPILQAWLEEAEGAQRE-------KMNKPEL-FNG--GEKKRKRTSIAAPEKRS 369
Query: 296 LEKSFLANQKPTSEEILLIAEQLHMEKEVIRVWFCNRRQKEKRI 339
LE F +P+SE+I IAE+L ++K V+RVWFCN+RQK+KR+
Sbjct: 370 LEAYFAVQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 413
>gi|110347455 Brn3b POU domain transcription factor [Homo sapiens]
Length = 409
Score = 131 bits (329), Expect = 1e-30
Identities = 79/172 (45%), Positives = 107/172 (62%), Gaps = 17/172 (9%)
Query: 175 PSHPEEPSDLE----ELEQFARTFKQRRIKLGFTQGDVGLAMGKLY---GNDFSQTTISR 227
PSH SD++ +LE FA FKQRRIKLG TQ DVG A+ L SQ+TI R
Sbjct: 242 PSHMGCMSDVDADPRDLEAFAERFKQRRIKLGVTQADVGSALANLKIPGVGSLSQSTICR 301
Query: 228 FEALNLSFKNMCKLKPLLEKWLNDAETMSVDSSLPSPNQLSSPSLGFDGLPGRRRKKRTS 287
FE+L LS NM LKP+L+ WL +AE + +L+ P L F+G +++KRTS
Sbjct: 302 FESLTLSHNNMIALKPILQAWLEEAEKSHRE-------KLTKPEL-FNG--AEKKRKRTS 351
Query: 288 IETNVRFALEKSFLANQKPTSEEILLIAEQLHMEKEVIRVWFCNRRQKEKRI 339
I + +LE F +P+SE+I IAE+L ++K V+RVWFCN+RQK+KR+
Sbjct: 352 IAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 403
>gi|23463326 POU domain class 5, transcription factor 2 [Homo
sapiens]
Length = 328
Score = 121 bits (303), Expect = 2e-27
Identities = 84/250 (33%), Positives = 128/250 (51%), Gaps = 36/250 (14%)
Query: 135 QPGLLPTPNLFQ-----LPQQTQGALLTSQPRAGLPTQPPKCLEPPSH------------ 177
+PG+ P P++++ LP + +G + +PR G ++ L PS
Sbjct: 51 RPGICPGPDVWRIPLGPLPHEFRGWIAPCRPRLGA-SEAGDWLRRPSEGALPGPYIALRS 109
Query: 178 ------PEEPSD-LEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEA 230
PE+ S L+EL+Q A+ +Q+R+ LG++Q DVG+A+G L+G SQTTI RFEA
Sbjct: 110 IPKLPPPEDISGILKELQQLAKELRQKRLSLGYSQADVGIAVGALFGKVLSQTTICRFEA 169
Query: 231 LNLSFKNMCKLKPLLEKWLNDAETMSVDSSLPSPNQLSSPSLGFDGLPGRRRKKRTSIET 290
LS NM KL+PLL+KWL + E ++ L + +R S E
Sbjct: 170 QQLSVANMWKLRPLLKKWLKEVEAENLLGLCKMEMILQQSG----------KWRRASRER 219
Query: 291 NVRFALEKSFLANQKPTSEEILLIAEQLHMEKEVIRVWFCNRRQKEKR-INPCSAAPMLP 349
+ +LEK F KPT ++I IA L ++K+V+RVWF NR + R N S ++
Sbjct: 220 RIGNSLEKFFQRCPKPTPQQISHIAGCLQLQKDVVRVWFYNRSKMGSRPTNDASPREIVG 279
Query: 350 SPGKPASYSP 359
+ G P +P
Sbjct: 280 TAGPPCPGAP 289
>gi|157743257 POU domain, class 6, transcription factor 2 [Homo
sapiens]
Length = 691
Score = 105 bits (263), Expect = 7e-23
Identities = 101/363 (27%), Positives = 159/363 (43%), Gaps = 70/363 (19%)
Query: 40 TNHQNPQNKTSPFSVSPTGPSTKIKAEDPSGDSAPAAPLPPQPAQPHL-PQAQLMLTGSQ 98
TN Q T P +P GPS++ SG L QP P L AQ + +
Sbjct: 337 TNAQGQIIGTIPLMPNP-GPSSQAA----SGTQG----LQVQPITPQLLTNAQGQIIATV 387
Query: 99 LAGDIQQLLQLQQLVLVP---GHHLQPPAQFLLPQAQQSQPGLLPTPNLFQLPQQTQGAL 155
+ I ++ Q + L P G L P+Q + QA SQ LL + Q+
Sbjct: 388 IGNQILPVINTQGITLSPIKPGQQLHQPSQTSVGQAA-SQGNLLHLAHSQASMSQSPVRQ 446
Query: 156 LTSQPRAGLPTQPPKCLEPPSHPEEPS------DLEELEQFARTFKQRRIKLGFTQGDVG 209
+S + + + S+P+ + +LEE+ +FA+ FK RR+ LG TQ VG
Sbjct: 447 ASSSSSSSSSSSALSVGQLVSNPQTAAGEVDGVNLEEIREFAKAFKIRRLSLGLTQTQVG 506
Query: 210 LAMGKLYGNDFSQTTI------------------------------------SRFEALNL 233
A+ G +SQ+ I +RFE L++
Sbjct: 507 QALSATEGPAYSQSAICRHTILRSHFFLPQEAQENTIASSLTAKLNPGLLYPARFEKLDI 566
Query: 234 SFKNMCKLKPLLEKWLNDAETMSVDSSLPSPNQLSSPSLGFDGLPGRRRKKRTSIETNVR 293
+ K+ K+KP+LE+W+ +AE + Q + +G + P ++RK+RTS
Sbjct: 567 TPKSAQKIKPVLERWMAEAEARH-----RAGMQNLTEFIGSE--PSKKRKRRTSFTPQAL 619
Query: 294 FALEKSFLANQKPTSEEILLIAEQLHMEKEVIRVWFCNRRQ-------KEKRINPCSAAP 346
L F N P+ +E+ IAE+L+ ++EV+RVWFCN+RQ + K+ P +A P
Sbjct: 620 EILNAHFEKNTHPSGQEMTEIAEKLNYDREVVRVWFCNKRQALKNTIKRLKQHEPATAVP 679
Query: 347 MLP 349
+ P
Sbjct: 680 LEP 682
Score = 37.0 bits (84), Expect = 0.038
Identities = 57/208 (27%), Positives = 78/208 (37%), Gaps = 36/208 (17%)
Query: 13 MSKPLEAEKQGLDS---PSEHTDTERN----GPDTNHQNPQNKTSPFSVSPTGPSTKIKA 65
+++PL A + DS PS+ N P T Q+ ++T P P GP + A
Sbjct: 42 LNEPLLAPVESNDSEDTPSKLFGARGNPALSDPGTPDQHQASQTHP--PFPVGPQPLLTA 99
Query: 66 EDPSGDSAPAAPL-PPQPAQP-------------------HLPQAQLM----LTGSQLAG 101
+ + A P PP QP LP A L L + AG
Sbjct: 100 QQLASAVAGVMPGGPPALNQPILIPFNMAGQLGGQQGLVLTLPTANLTNIQGLVAAAAAG 159
Query: 102 DIQQLLQLQQLVLVPGHHLQPPAQFLLPQAQQSQPGLLPTPNLFQLPQQTQGALLTSQPR 161
I L LQ L + Q L Q QQ Q P P+ Q PQ A SQ +
Sbjct: 160 GIMTL-PLQNLQATSSLNSQLQQLQLQLQQQQQQQQQQPPPSTNQHPQPAPQAPSQSQQQ 218
Query: 162 AGLPTQPPKCLEPPSHPEEPSDLEELEQ 189
PT P + PP+ + P+ +L+Q
Sbjct: 219 PLQPTPPQQ--PPPASQQPPAPTSQLQQ 244
>gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2790
Score = 54.3 bits (129), Expect = 2e-07
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 18/176 (10%)
Query: 273 GFDGLPGRRRKKRTSIETNVRFALEKSFLANQKPTSEEILLIAEQLHMEKEVIRVWFCNR 332
G +G P R ++ RT+I L + ++ + PT + + I+E++ ++K V++VWF N
Sbjct: 2067 GGEGEPPRDKRLRTTILPEQLEILYRWYMQDSNPTRKMLDCISEEVGLKKRVVQVWFQNT 2126
Query: 333 RQKEKRINPCSAAPMLPSPG--KPASYSPHMV---------TPQGGAGTLPLSQASSSLS 381
R +E++ S +PSP PA+ +P + G P +A +
Sbjct: 2127 RARERKGQFRSTPGGVPSPAVKPPATATPASLPKFNLLLGKVDDGTGREAPKREAPAFPY 2186
Query: 382 TTVTTLSSAVGTLHPSRTAGGGGGGGGAAPPLNSIPSVTPPPPATTNSTNPSPQGS 437
T T S L P + A P +P + PPPP+ P+ S
Sbjct: 2187 PTATLASGPQPFLPPGKEA-------TTPTPEPPLPLLPPPPPSEEEGPEEPPKAS 2235
Score = 42.4 bits (98), Expect = 0.001
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 258 DSSLPSPNQLSSPSLG-FDGLPGR---------RRKKRTSIETNVRFALEKSFLANQKPT 307
DSS S + SP G G PG +R+ RT + + ++ + A + PT
Sbjct: 2250 DSSASSLAEPESPGAGGTSGGPGGGTGVPDGMGQRRYRTQMSSLQLKIMKACYEAYRTPT 2309
Query: 308 SEEILLIAEQLHMEKEVIRVWFCNRRQKEKR 338
+E ++ E++ + K VI+VWF N R KEK+
Sbjct: 2310 MQECEVLGEEIGLPKRVIQVWFQNARAKEKK 2340
Score = 37.7 bits (86), Expect = 0.022
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 277 LPGRRRKKRTSIETNVRFALEKSFLANQKPTSEEILLIAEQLHMEKEVIRVWFCNRRQKE 336
+P RR RT AL+ F + P E+ +A L + V+ VWF N RQK
Sbjct: 1809 VPAGRRFSRTKFTEFQTQALQSFFETSAYPKDGEVERLASLLGLASRVVVVWFQNARQKA 1868
Query: 337 KRINPCSAAPM 347
++ N C M
Sbjct: 1869 RK-NACEGGSM 1878
>gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 54.3 bits (129), Expect = 2e-07
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 18/176 (10%)
Query: 273 GFDGLPGRRRKKRTSIETNVRFALEKSFLANQKPTSEEILLIAEQLHMEKEVIRVWFCNR 332
G +G P R ++ RT+I L + ++ + PT + + I+E++ ++K V++VWF N
Sbjct: 1983 GGEGEPPRDKRLRTTILPEQLEILYRWYMQDSNPTRKMLDCISEEVGLKKRVVQVWFQNT 2042
Query: 333 RQKEKRINPCSAAPMLPSPG--KPASYSPHMV---------TPQGGAGTLPLSQASSSLS 381
R +E++ S +PSP PA+ +P + G P +A +
Sbjct: 2043 RARERKGQFRSTPGGVPSPAVKPPATATPASLPKFNLLLGKVDDGTGREAPKREAPAFPY 2102
Query: 382 TTVTTLSSAVGTLHPSRTAGGGGGGGGAAPPLNSIPSVTPPPPATTNSTNPSPQGS 437
T T S L P + A P +P + PPPP+ P+ S
Sbjct: 2103 PTATLASGPQPFLPPGKEA-------TTPTPEPPLPLLPPPPPSEEEGPEEPPKAS 2151
Score = 42.4 bits (98), Expect = 0.001
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 258 DSSLPSPNQLSSPSLG-FDGLPGR---------RRKKRTSIETNVRFALEKSFLANQKPT 307
DSS S + SP G G PG +R+ RT + + ++ + A + PT
Sbjct: 2166 DSSASSLAEPESPGAGGTSGGPGGGTGVPDGMGQRRYRTQMSSLQLKIMKACYEAYRTPT 2225
Query: 308 SEEILLIAEQLHMEKEVIRVWFCNRRQKEKR 338
+E ++ E++ + K VI+VWF N R KEK+
Sbjct: 2226 MQECEVLGEEIGLPKRVIQVWFQNARAKEKK 2256
Score = 37.7 bits (86), Expect = 0.022
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 277 LPGRRRKKRTSIETNVRFALEKSFLANQKPTSEEILLIAEQLHMEKEVIRVWFCNRRQKE 336
+P RR RT AL+ F + P E+ +A L + V+ VWF N RQK
Sbjct: 1725 VPAGRRFSRTKFTEFQTQALQSFFETSAYPKDGEVERLASLLGLASRVVVVWFQNARQKA 1784
Query: 337 KRINPCSAAPM 347
++ N C M
Sbjct: 1785 RK-NACEGGSM 1794
>gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 54.3 bits (129), Expect = 2e-07
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 18/176 (10%)
Query: 273 GFDGLPGRRRKKRTSIETNVRFALEKSFLANQKPTSEEILLIAEQLHMEKEVIRVWFCNR 332
G +G P R ++ RT+I L + ++ + PT + + I+E++ ++K V++VWF N
Sbjct: 1983 GGEGEPPRDKRLRTTILPEQLEILYRWYMQDSNPTRKMLDCISEEVGLKKRVVQVWFQNT 2042
Query: 333 RQKEKRINPCSAAPMLPSPG--KPASYSPHMV---------TPQGGAGTLPLSQASSSLS 381
R +E++ S +PSP PA+ +P + G P +A +
Sbjct: 2043 RARERKGQFRSTPGGVPSPAVKPPATATPASLPKFNLLLGKVDDGTGREAPKREAPAFPY 2102
Query: 382 TTVTTLSSAVGTLHPSRTAGGGGGGGGAAPPLNSIPSVTPPPPATTNSTNPSPQGS 437
T T S L P + A P +P + PPPP+ P+ S
Sbjct: 2103 PTATLASGPQPFLPPGKEA-------TTPTPEPPLPLLPPPPPSEEEGPEEPPKAS 2151
Score = 42.4 bits (98), Expect = 0.001
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 258 DSSLPSPNQLSSPSLG-FDGLPGR---------RRKKRTSIETNVRFALEKSFLANQKPT 307
DSS S + SP G G PG +R+ RT + + ++ + A + PT
Sbjct: 2166 DSSASSLAEPESPGAGGTSGGPGGGTGVPDGMGQRRYRTQMSSLQLKIMKACYEAYRTPT 2225
Query: 308 SEEILLIAEQLHMEKEVIRVWFCNRRQKEKR 338
+E ++ E++ + K VI+VWF N R KEK+
Sbjct: 2226 MQECEVLGEEIGLPKRVIQVWFQNARAKEKK 2256
Score = 37.7 bits (86), Expect = 0.022
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 277 LPGRRRKKRTSIETNVRFALEKSFLANQKPTSEEILLIAEQLHMEKEVIRVWFCNRRQKE 336
+P RR RT AL+ F + P E+ +A L + V+ VWF N RQK
Sbjct: 1725 VPAGRRFSRTKFTEFQTQALQSFFETSAYPKDGEVERLASLLGLASRVVVVWFQNARQKA 1784
Query: 337 KRINPCSAAPM 347
++ N C M
Sbjct: 1785 RK-NACEGGSM 1794
>gi|162951873 ventral anterior homeobox 1 isoform a [Homo sapiens]
Length = 334
Score = 54.3 bits (129), Expect = 2e-07
Identities = 50/183 (27%), Positives = 72/183 (39%), Gaps = 5/183 (2%)
Query: 280 RRRKKRTSIETNVRFALEKSFLANQKPTSEEILLIAEQLHMEKEVIRVWFCNRRQKEKRI 339
R ++ RTS + LE F Q E +A QL++ + ++VWF NRR K+K+
Sbjct: 99 RPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKD 158
Query: 340 NPCSAAPMLPSPGKPASYSPHMVTPQGGAGTLPLSQASSSLSTTVTTLSSAVGTLHPSRT 399
+ A+ S + QG + P A T S+ G P+
Sbjct: 159 QGKDSELRSVVSETAATCSVLRLLEQGRLLSPPGLPALLPPCATGALGSALRGPSLPALG 218
Query: 400 AGGGGGGGGAAPPLNSIP--SVTPPPPATTNSTNPSPQGSHSAIGLSGLNPSTGPGLWWN 457
AG G AA P + +P PPA + P P G GL P+ G L+
Sbjct: 219 AGAAAGSAAAAAAAAPGPAGAASPHPPAVGGAPGPGPAGPG---GLHAGAPAAGHSLFSL 275
Query: 458 PAP 460
P P
Sbjct: 276 PVP 278
>gi|4557489 cone-rod homeobox protein [Homo sapiens]
Length = 299
Score = 52.4 bits (124), Expect = 9e-07
Identities = 62/227 (27%), Positives = 102/227 (44%), Gaps = 28/227 (12%)
Query: 248 WLNDAETMSVDS-SLPSPN-QLSSPSLGFDGLPGRRRKKRTSIETNVRFALEKSFLANQK 305
++N SV++ +L P+ L ++ + P ++R++RT+ + LE F Q
Sbjct: 4 YMNPGPHYSVNALALSGPSVDLMHQAVPYPSAPRKQRRERTTFTRSQLEELEALFAKTQY 63
Query: 306 PTSEEILLIAEQLHMEKEVIRVWFCNRR---------QKEKRINPCSAAPMLPSPGKPAS 356
P +A ++++ + ++VWF NRR QK+++ P A P+ K A
Sbjct: 64 PDVYAREEVALKINLPESRVQVWFKNRRAKCRQQRQQQKQQQQPPGGQAKARPAKRK-AG 122
Query: 357 YSPHMVT-----PQGGAGTL--PLSQASSSLSTTVTTLS----SAVGTLHPSRTAGGGGG 405
SP T P G + + PL S S +T V T+S ++ L ++ AG
Sbjct: 123 TSPRPSTDVCPDPLGISDSYSPPLPGPSGSPTTAVATVSIWSPASESPLPEAQRAGLVAS 182
Query: 406 GGGAAPPLNSIPSVTPPPPATTNSTNPSPQGSHSAIGLSGLNPSTGP 452
G P L S P PA+ ++PS GS S+ SGL+P P
Sbjct: 183 G----PSLTSAPYAMTYAPASAFCSSPSAYGSPSSY-FSGLDPYLSP 224
>gi|30410785 LIM homeobox protein 1 [Homo sapiens]
Length = 406
Score = 51.6 bits (122), Expect = 1e-06
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 251 DAETMSVDSSLPSPNQLSSPSLGFDGLPGRRRKKRTSIETNVRFALEKSFLANQKPTSEE 310
D+E+ +V N+ +LG +RR RT+I+ L+ +F A KPT
Sbjct: 155 DSESANVSDKEAGSNENDDQNLG-----AKRRGPRTTIKAKQLETLKAAFAATPKPTRHI 209
Query: 311 ILLIAEQLHMEKEVIRVWFCNRRQKEKRINPCSA 344
+A++ + VI+VWF NRR KE+R+ SA
Sbjct: 210 REQLAQETGLNMRVIQVWFQNRRSKERRMKQLSA 243
>gi|50345997 E1A binding protein p300 [Homo sapiens]
Length = 2414
Score = 51.2 bits (121), Expect = 2e-06
Identities = 52/170 (30%), Positives = 70/170 (41%), Gaps = 25/170 (14%)
Query: 20 EKQGLDSPSEHTDTERNGPD-TNHQNPQ-----NKTSPFSVSPTGPSTKIKAEDPSGDSA 73
++QGL SP+ T T G T Q PQ T P S+ P P T+ G +A
Sbjct: 1843 QQQGLPSPTPATPTTPTGQQPTTPQTPQPTSQPQPTPPNSMPPYLPRTQAAGPVSQGKAA 1902
Query: 74 PAA--PLPPQPAQPHL----PQAQLMLTGSQLAGDIQQLLQLQQLVLVPGHHLQPPAQFL 127
P PPQ AQP L P A M Q A + Q+ + Q+ P H PP +
Sbjct: 1903 GQVTPPTPPQTAQPPLPGPPPAAVEMAMQIQRAAETQRQMAHVQIFQRPIQHQMPPMTPM 1962
Query: 128 LPQAQQS-----------QPGLLPTPNLFQLPQQTQGAL-LTSQPRAGLP 165
P +PG+ PT + Q P +QG L Q ++G+P
Sbjct: 1963 APMGMNPPPMTRGPSGHLEPGMGPT-GMQQQPPWSQGGLPQPQQLQSGMP 2011
Score = 40.0 bits (92), Expect = 0.004
Identities = 39/139 (28%), Positives = 51/139 (36%), Gaps = 25/139 (17%)
Query: 42 HQNPQNKTSPFSVSPTGPSTKIKAEDPSGDSAPAAPLPPQPAQPHLPQAQLMLTGSQLAG 101
HQN + + +P I A+ P + PA P+P PA P PQ+Q +
Sbjct: 828 HQNSPSPVPSRTPTPHHTPPSIGAQQPPATTIPA-PVPTPPAMPPGPQSQALHP------ 880
Query: 102 DIQQLLQLQQLVLVPGHHLQPPAQFLLPQAQQSQPGLLPTPNLFQLPQQ--TQGALLTSQ 159
P P LPQ Q QP L P+ Q QQ +Q + S
Sbjct: 881 --------------PPRQTPTPPTTQLPQ--QVQPSLPAAPSADQPQQQPRSQQSTAASV 924
Query: 160 PRAGLPTQPPKCLEPPSHP 178
P P PP+ P S P
Sbjct: 925 PTPTAPLLPPQPATPLSQP 943
Score = 31.2 bits (69), Expect = 2.1
Identities = 42/156 (26%), Positives = 59/156 (37%), Gaps = 18/156 (11%)
Query: 73 APAAPLPPQPAQPHLP-QAQLM-LTGSQLAGDIQQLLQLQQLVLVPGHHLQPPAQFLLPQ 130
+P P P P Q LP QAQ L G Q+ + ++ Q V P QPP P+
Sbjct: 2271 SPVQPNPMSPQQHMLPNQAQSPHLQGQQIPNSLSNQVRSPQPVPSPRPQSQPPHSSPSPR 2330
Query: 131 AQQSQPGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQPPKCLEPPSHPEEPSDLEELEQF 190
Q P P+ + QT S P GL +E H P L Q
Sbjct: 2331 MQ-------PQPSPHHVSPQT------SSPHPGLVAAQANPME-QGHFASPDQNSMLSQL 2376
Query: 191 ARTFKQRRIKLGFTQGDVGLAMGKL-YGNDFSQTTI 225
A + G + D+GL+ ++ SQ+T+
Sbjct: 2377 ASNPGMANLH-GASATDLGLSTDNSDLNSNLSQSTL 2411
Score = 29.6 bits (65), Expect = 6.0
Identities = 37/130 (28%), Positives = 51/130 (39%), Gaps = 11/130 (8%)
Query: 78 LPPQPAQPHLPQAQLM---LTGSQLAGDIQQLLQLQQLVLVPGHHLQPPAQF-LLPQAQQ 133
L Q Q L QAQ++ + Q G + Q L P P Q PQ Q
Sbjct: 1813 LRQQQLQHRLQQAQMLRRRMASMQRTGVVGQQQGLPSPT--PATPTTPTGQQPTTPQTPQ 1870
Query: 134 --SQPGLLPTPNLFQLPQQTQGALLTSQPRAG---LPTQPPKCLEPPSHPEEPSDLEELE 188
SQP P ++ +TQ A SQ +A P PP+ +PP P+ +E
Sbjct: 1871 PTSQPQPTPPNSMPPYLPRTQAAGPVSQGKAAGQVTPPTPPQTAQPPLPGPPPAAVEMAM 1930
Query: 189 QFARTFKQRR 198
Q R + +R
Sbjct: 1931 QIQRAAETQR 1940
>gi|11641283 LIM homeobox protein 5 [Homo sapiens]
Length = 402
Score = 51.2 bits (121), Expect = 2e-06
Identities = 39/127 (30%), Positives = 59/127 (46%), Gaps = 4/127 (3%)
Query: 241 LKPLLEKWLNDAETMSVDSSLPSPNQLSSPSLGFDGLPGRRRKKRTSIETNVRFALEKSF 300
L P L+ L D + D+S S + ++ +RR RT+I+ L+ +F
Sbjct: 141 LSPDLQDALQD-DPKETDNSTSSDKETANNENEEQNSGTKRRGPRTTIKAKQLETLKAAF 199
Query: 301 LANQKPTSEEILLIAEQLHMEKEVIRVWFCNRRQKEKRINPCSAAPMLPSPGKPASYSPH 360
A KPT +A++ + VI+VWF NRR KE+R+ SA L + SP
Sbjct: 200 AATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSA---LGARRHAFFRSPR 256
Query: 361 MVTPQGG 367
+ P GG
Sbjct: 257 RMRPLGG 263
>gi|148746211 NK2 transcription factor related, locus 3 [Homo
sapiens]
Length = 364
Score = 50.8 bits (120), Expect = 3e-06
Identities = 43/166 (25%), Positives = 65/166 (39%), Gaps = 36/166 (21%)
Query: 278 PGRRRKKRTSIETNVRFALEKSFLANQKPTSEEILLIAEQLHMEKEVIRVWFCNRRQKEK 337
P RRK R F LE+ F + ++ E +A L + +++WF NRR K K
Sbjct: 145 PRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCK 204
Query: 338 RINPCS----------------AAPMLPSPGKP-----------------ASYSPHMVTP 364
R A P+L GKP ++YS +
Sbjct: 205 RQRQDKSLELGAHAPPPPPRRVAVPVLVRDGKPCVTPSAQAYGAPYSVGASAYSYNSFPA 264
Query: 365 QGGAGTLPLSQASSSLSTTVTTLSSAVGTLHPSRTAGGGGGGGGAA 410
G + + A+++ + SS+ G +P AGGGGGGGG +
Sbjct: 265 YGYGNSAAAAAAAAAAAAAAAAYSSSYGCAYP---AGGGGGGGGTS 307
>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
Length = 3703
Score = 50.1 bits (118), Expect = 4e-06
Identities = 85/296 (28%), Positives = 122/296 (41%), Gaps = 38/296 (12%)
Query: 61 TKIKAEDPSGDSAPAA-PLPPQPAQPH-LPQAQLMLTGSQLAGDIQQLLQLQQLVLVPGH 118
T+ E P AP+A P Q Q P+ Q Q QQ +L QLV +P
Sbjct: 2423 TEAGDEKPKLAEAPSAQPNQTQEKQGQPKPELQQQEQPEQKTNTPQQ--KLPQLVSLPSL 2480
Query: 119 HLQPPAQFLLPQAQQSQPGLLPTPNLFQLPQQTQGALLTSQPR--AGLPTQ--PPKC--- 171
QPP Q PQ Q P+P+ QL L TS P+ A LP Q P +C
Sbjct: 2481 P-QPPPQAPPPQCPLPQSS--PSPS--QLSHLPLKPLHTSTPQQLANLPPQLIPYQCDQC 2535
Query: 172 -LEPPS--HPEEPSDLEELE---QFART-FKQRRIKLGFTQGDVG--LAMGKLYGNDFSQ 222
L PS H +E L L QF F R + + F D L +L Q
Sbjct: 2536 KLAFPSFEHWQEHQQLHFLSAQNQFIHPQFLDRSLDMPFMLFDPSNPLLASQLLSGAIPQ 2595
Query: 223 TTISRFEALNLSFKNMCKLKPLLEKWLNDAETMSVDSSLPSPNQLSSPSLGFDGLPGRRR 282
S + + M LK LE + + SP + S + G + P R +
Sbjct: 2596 IPASSATSPSTPTSTMNTLKRKLE-----------EKASASPGENDSGTGGEE--PQRDK 2642
Query: 283 KKRTSIETNVRFALEKSFLANQKPTSEEILLIAEQLHMEKEVIRVWFCNRRQKEKR 338
+ RT+I L + +L + PT + + IA ++ ++K V++VWF N R +E++
Sbjct: 2643 RLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERK 2698
Score = 44.3 bits (103), Expect = 2e-04
Identities = 78/308 (25%), Positives = 114/308 (37%), Gaps = 64/308 (20%)
Query: 56 PTGPSTKIKAEDPSGDSAPAAPL-PPQPAQ-PHLPQAQLMLTGSQLAGDIQQLLQLQQLV 113
P P T P P P PPQPA P +P + +T +A
Sbjct: 2031 PLRPQTPEPPPPPPPPPPPPLPAAPPQPASTPAIPASAPPITSPTIA------------- 2077
Query: 114 LVPGHHLQPPAQFLLPQAQQSQPGLLP--TPNLFQ-LPQQTQGALLTSQPRAGLPTQPPK 170
PAQ +P Q S P LP +P + Q +P QT LP Q P
Sbjct: 2078 ---------PAQPSVPLTQLSMPMELPIFSPLMMQTMPLQT------------LPAQLPP 2116
Query: 171 CLEPPSHPEEPSDLEEL--EQFARTFKQRRIKLGFTQ-GDVGLAMGKLYGNDFSQTTISR 227
L P P+DL +L Q T Q++ K T+ D L + + Y + + S
Sbjct: 2117 QLGPVE--PLPADLAQLYQHQLNPTLLQQQNKRPRTRITDDQLRVLRQYFD--INNSPSE 2172
Query: 228 FEALNLSFKNMCKLKPLLEKWLNDAETMSVDSSLPSPNQLSSP------SLGFDGLP--- 278
+ ++ K+ K +++ W + + SP S+P L D P
Sbjct: 2173 EQIKEMADKSGLPQK-VIKHWFRNTLFKERQRNKDSPYNFSNPPITSLEELKIDSRPPSP 2231
Query: 279 --------GRRRKKRTSIETNVRFALEKSFLANQKPTSEEILLIAEQLHMEKEVIRVWFC 330
G +R RT L+ F AN P +E ++ L++ VI VWF
Sbjct: 2232 EPPKQEYWGSKRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQ 2291
Query: 331 NRRQKEKR 338
N RQK ++
Sbjct: 2292 NARQKARK 2299
Score = 40.0 bits (92), Expect = 0.004
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
Query: 252 AETMSV-DSSLPSPNQLSSPSLGFDGLPGRR--RKKRTSIETNVRFALEKS-FLANQKPT 307
+ET S+ D PSP +S S G G G R +K+ + TN++ + KS F + PT
Sbjct: 2915 SETSSLADPCSPSPG--ASGSAGKSGDSGDRPGQKRFRTQMTNLQLKVLKSCFNDYRTPT 2972
Query: 308 SEEILLIAEQLHMEKEVIRVWFCNRRQKEKR 338
E ++ + + K V++VWF N R KEK+
Sbjct: 2973 MLECEVLGNDIGLPKRVVQVWFQNARAKEKK 3003
Score = 35.8 bits (81), Expect = 0.084
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 228 FEALNLSFKNMCKLKPLLEKWLNDAETMSVDSSLPSPNQLSSPSLGFDGLPGRRRKKRTS 287
F L + + L L L E + D + +QL+ P+L L + ++ RT
Sbjct: 2097 FSPLMMQTMPLQTLPAQLPPQLGPVEPLPADLAQLYQHQLN-PTL----LQQQNKRPRTR 2151
Query: 288 IETNVRFALEKSFLANQKPTSEEILLIAEQLHMEKEVIRVWFCNRRQKEKRIN 340
I + L + F N P+ E+I +A++ + ++VI+ WF N KE++ N
Sbjct: 2152 ITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQRN 2204
>gi|169881277 PROP paired-like homeobox 1 [Homo sapiens]
Length = 226
Score = 49.7 bits (117), Expect = 6e-06
Identities = 57/205 (27%), Positives = 79/205 (38%), Gaps = 40/205 (19%)
Query: 254 TMSVDSSLPSPNQLS---------SPSLGFDGLPGRRRKKRTSIETNVRFALEKSFLANQ 304
T +VDSS P +L SP G G P RR+ RT+ LE +F NQ
Sbjct: 33 TTTVDSSAPPCRRLPGAGGGRSRFSPQGGQRGRPHSRRRHRTTFSPVQLEQLESAFGRNQ 92
Query: 305 KPTSEEILLIAEQLHMEKEVIRVWFCNRRQKEKR-----------INPCSAAPMLP-SPG 352
P +A + + I+VWF NRR K+++ ++P + + LP S
Sbjct: 93 YPDIWARESLARDTGLSEARIQVWFQNRRAKQRKQERSLLQPLAHLSPAAFSSFLPESTA 152
Query: 353 KPASYS--PHMVT--PQGGAGTLPLSQASSSLSTTVTTLSSAVGTLHPSRTAGGGGGGGG 408
P SY+ P VT P + LP ++ TLHP+
Sbjct: 153 CPYSYAAPPPPVTCFPHPYSHALPSQPSTGGAFALSHQSEDWYPTLHPA----------- 201
Query: 409 AAPPLNSIPSVTPPPPATTNSTNPS 433
P +P PPPP S PS
Sbjct: 202 ---PAGHLP-CPPPPPMLPLSLEPS 222
>gi|20070107 orthodenticle homeobox 1 [Homo sapiens]
Length = 354
Score = 49.3 bits (116), Expect = 7e-06
Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 15/183 (8%)
Query: 267 LSSPSLGFDGLPGRRRKKRTSIETNVRFALEKSFLANQKPTSEEILLIAEQLHMEKEVIR 326
L PS+G+ P ++R++RT+ + LE F + P +A ++++ + ++
Sbjct: 24 LLHPSVGYPATPRKQRRERTTFTRSQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQ 83
Query: 327 VWFCNRRQK-EKRINPCSAAPMLPSPGKPASYSPHMVTPQGGAGTLPLSQASSSLSTTVT 385
VWF NRR K ++ S P+ K + + G T P +S+S S++ +
Sbjct: 84 VWFKNRRAKCRQQQQSGSGTKSRPAKKKSSPVRESSGSESSGQFTPPAVSSSASSSSSAS 143
Query: 386 TLSSAVGTLHPSRTAGGGGGGGGAA-------PPLNSI--PSVTPPPPATTNSTNPSPQG 436
+ S+ +P+ A G GG A P +SI P+ P A + + P P
Sbjct: 144 SSSA-----NPAAAAAAGLGGNPVAAASSLSTPAASSIWSPASISPGSAPASVSVPEPLA 198
Query: 437 SHS 439
+ S
Sbjct: 199 APS 201
Score = 30.0 bits (66), Expect = 4.6
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 340 NPCSAAPMLPSPGKPASYSPHMVTPQGGAGTL----PLSQAS--SSLSTTVTTLSSAVGT 393
NP +AA L +P + +SP ++P ++ PL+ S S + +V ++
Sbjct: 160 NPVAAASSLSTPAASSIWSPASISPGSAPASVSVPEPLAAPSNTSCMQRSVAAGAATAAA 219
Query: 394 LHPSRTAGGGGGGGGAAPPLNS 415
+P GG G G P +S
Sbjct: 220 SYPMSYGQGGSYGQGYPTPSSS 241
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.129 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,649,637
Number of Sequences: 37866
Number of extensions: 1472757
Number of successful extensions: 16693
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 811
Number of HSP's that attempted gapping in prelim test: 11682
Number of HSP's gapped (non-prelim): 5133
length of query: 463
length of database: 18,247,518
effective HSP length: 106
effective length of query: 357
effective length of database: 14,233,722
effective search space: 5081438754
effective search space used: 5081438754
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.