Guide to the Human Genome
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Name: HTR4 Sequence: fasta or formatted (360aa) NCBI GI: 94421456
Description:

serotonin 5-HT4 receptor isoform d

Referenced in:

Serotonin

Other entries for this name:
alt prot [388aa] serotonin 5-HT4 receptor isoform b
alt prot [378aa] serotonin 5-HT4 receptor isoform g
alt prot [387aa] serotonin 5-HT4 receptor isoform a
alt prot [402aa] serotonin 5-HT4 receptor isoform hb
alt prot [428aa] serotonin 5-HT4 receptor isoform i
alt prot [359aa] serotonin 5-HT4 receptor isoform n
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         23           2
 C cysteine            4.4         16           2
 D aspartate           3.6         13           2
 E glutamate           2.8         10           2
 F phenylalanine       6.4         23           2
 G glycine             4.4         16           2
 H histidine           1.7          6           1
 I isoleucine          8.6         31           2
 K lysine              3.3         12           1
 L leucine            11.4         41           2
 M methionine          3.3         12           1
 N asparagine          4.2         15           2
 P proline             3.9         14           1
 Q glutamine           3.3         12           1
 R arginine            5.0         18           2
 S serine              6.4         23           2
 T threonine           6.4         23           3
 V valine              8.3         30           2
 W tryptophan          1.9          7           1
 Y tyrosine            4.2         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   serotonin 5-HT4 receptor isoform d 
HTR4                  0.999   serotonin 5-HT4 receptor isoform a 
HTR4                  0.997   serotonin 5-HT4 receptor isoform n 
HTR4                  0.997   serotonin 5-HT4 receptor isoform i 
HTR4                  0.997   serotonin 5-HT4 receptor isoform b 
HTR4                  0.994   serotonin 5-HT4 receptor isoform g 
HTR4                  0.983   serotonin 5-HT4 receptor isoform hb 
DRD1                  0.273   dopamine receptor D1 
DRD5                  0.262   dopamine receptor D5 
HRH2                  0.259   histamine receptor H2 isoform 1 
HRH2                  0.259   histamine receptor H2 isoform 2 
ADRB2                 0.256   adrenergic, beta-2-, receptor, surface 
TAAR1                 0.252   trace amine associated receptor 1 
ADRB1                 0.248   beta-1-adrenergic receptor 
HTR7                  0.239   5-hydroxytryptamine receptor 7 isoform b 
HTR7                  0.239   5-hydroxytryptamine receptor 7 isoform d 
HTR7                  0.239   5-hydroxytryptamine receptor 7 isoform a 
TAAR2                 0.235   trace amine associated receptor 2 isoform 1 
TAAR2                 0.232   trace amine associated receptor 2 isoform 2 
ADRA1D                0.228   alpha-1D-adrenergic receptor 
TAAR6                 0.215   trace amine associated receptor 6 
ADRA1B                0.214   alpha-1B-adrenergic receptor 
TAAR9                 0.214   trace amine associated receptor 9 
ADRA1A                0.210   alpha-1A-adrenergic receptor isoform 4 
ADRA1A                0.210   alpha-1A-adrenergic receptor isoform 1 
ADRA1A                0.210   alpha-1A-adrenergic receptor isoform 2 
ADRA1A                0.210   alpha-1A-adrenergic receptor isoform 3 
HTR6                  0.210   5-hydroxytryptamine (serotonin) receptor 6 
ADRB3                 0.205   adrenergic, beta-3-, receptor 
TAAR8                 0.204   trace amine associated receptor 8 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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