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Search of human proteins with 4505049
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4505049 lymphocyte antigen 6 complex, locus E [Homo sapiens]
(131 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|187761331 lymphocyte antigen 6 complex, locus E [Homo sapiens] 266 4e-72
gi|4505049 lymphocyte antigen 6 complex, locus E [Homo sapiens] 266 4e-72
gi|5031995 prostate stem cell antigen preproprotein [Homo sapiens] 60 4e-10
gi|239754985 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo s... 60 4e-10
gi|239749508 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo s... 60 4e-10
gi|239743642 PREDICTED: hypothetical protein XP_002342921 [Homo ... 60 4e-10
gi|208431840 lymphocyte antigen 6 complex, locus H isoform b [Ho... 58 2e-09
gi|208431838 lymphocyte antigen 6 complex, locus H isoform a [Ho... 58 2e-09
gi|194440697 lymphocyte antigen 6 complex, locus H isoform b [Ho... 58 2e-09
gi|11321575 lymphocyte antigen 6 complex, locus D [Homo sapiens] 45 1e-05
gi|29294645 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens] 45 1e-05
gi|29337283 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens] 45 1e-05
gi|29294641 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens] 45 1e-05
gi|30794264 glycosylphosphatidylinositol anchored high density l... 42 1e-04
gi|9966907 ARS component B precursor [Homo sapiens] 42 1e-04
gi|45387925 LY6/PLAUR domain containing 2 [Homo sapiens] 41 2e-04
gi|29337281 Ly-6 neurotoxin-like protein 1 isoform a [Homo sapiens] 37 0.003
gi|29294643 secreted Ly6/uPAR related protein 2 isoform b [Homo ... 36 0.010
gi|4504615 insulin-like growth factor binding protein 1 precurso... 32 0.11
gi|123173777 keratin associated protein 5-8 [Homo sapiens] 31 0.24
gi|60593038 keratin associated protein 5-4 [Homo sapiens] 31 0.32
gi|60593036 keratin associated protein 5-3 [Homo sapiens] 30 0.41
gi|19424138 sperm acrosomal membrane protein 14 [Homo sapiens] 30 0.70
gi|239757302 PREDICTED: similar to R28379_1 [Homo sapiens] 28 1.6
gi|239751807 PREDICTED: similar to R28379_1 [Homo sapiens] 28 1.6
gi|239746298 PREDICTED: similar to R28379_1 [Homo sapiens] 28 1.6
gi|51243049 lymphocyte antigen 6 complex G6D [Homo sapiens] 28 1.6
gi|114431244 von Willebrand factor C and EGF domains [Homo sapiens] 28 1.6
gi|239755460 PREDICTED: similar to mucin, partial [Homo sapiens] 28 2.1
gi|134031945 SCO-spondin [Homo sapiens] 28 2.1
>gi|187761331 lymphocyte antigen 6 complex, locus E [Homo sapiens]
Length = 131
Score = 266 bits (679), Expect = 4e-72
Identities = 131/131 (100%), Positives = 131/131 (100%)
Query: 1 MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNL 60
MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNL
Sbjct: 1 MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNL 60
Query: 61 VTFGHSLSKTCSPACPIPEGVNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAGLLL 120
VTFGHSLSKTCSPACPIPEGVNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAGLLL
Sbjct: 61 VTFGHSLSKTCSPACPIPEGVNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAGLLL 120
Query: 121 SLLPALLRFGP 131
SLLPALLRFGP
Sbjct: 121 SLLPALLRFGP 131
>gi|4505049 lymphocyte antigen 6 complex, locus E [Homo sapiens]
Length = 131
Score = 266 bits (679), Expect = 4e-72
Identities = 131/131 (100%), Positives = 131/131 (100%)
Query: 1 MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNL 60
MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNL
Sbjct: 1 MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNL 60
Query: 61 VTFGHSLSKTCSPACPIPEGVNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAGLLL 120
VTFGHSLSKTCSPACPIPEGVNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAGLLL
Sbjct: 61 VTFGHSLSKTCSPACPIPEGVNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAGLLL 120
Query: 121 SLLPALLRFGP 131
SLLPALLRFGP
Sbjct: 121 SLLPALLRFGP 131
>gi|5031995 prostate stem cell antigen preproprotein [Homo sapiens]
Length = 123
Score = 60.5 bits (145), Expect = 4e-10
Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 15/133 (11%)
Query: 1 MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNL 60
MK L LL A L ++ ++L+C+SC Q SN CL+ C+ C T A +G L
Sbjct: 1 MKAVLLALLMAGLALQPGTALLCYSCKAQVSNEDCLQVENCTQLGEQCWTARIRA-VGLL 59
Query: 61 VTFGHSLSKTCSPACPIPEGVNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAGLLL 120
+SK CS C + + + V I+CC + LCN S A L A +L
Sbjct: 60 TV----ISKGCSLNC-VDDSQDYYVGKKNITCCDTDLCNASGAH-------ALQPAAAIL 107
Query: 121 SLLPA--LLRFGP 131
+LLPA LL +GP
Sbjct: 108 ALLPALGLLLWGP 120
>gi|239754985 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo
sapiens]
Length = 190
Score = 60.5 bits (145), Expect = 4e-10
Identities = 45/128 (35%), Positives = 62/128 (48%), Gaps = 11/128 (8%)
Query: 1 MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNL 60
M++ L +LL A + A +L C C + +C C+ D YCV A++ G L
Sbjct: 1 MRLLLVLLLLAAVCAALAQALHCHVCCGHE---HCESLVECAPTDKYCVITRATSPGGIL 57
Query: 61 VTFGHSLSKTCSPACPIPEGVNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAGLLL 120
V K+CSP CP V+ ++ +SCCQ CN SAA GL S L A +
Sbjct: 58 VM------KSCSPTCP-NSTVSSDSRALSVSCCQGSQCNRSAA-AGLVGSPGTLWASIAA 109
Query: 121 SLLPALLR 128
S L ALL+
Sbjct: 110 SQLWALLQ 117
>gi|239749508 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo
sapiens]
Length = 190
Score = 60.5 bits (145), Expect = 4e-10
Identities = 45/128 (35%), Positives = 62/128 (48%), Gaps = 11/128 (8%)
Query: 1 MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNL 60
M++ L +LL A + A +L C C + +C C+ D YCV A++ G L
Sbjct: 1 MRLLLVLLLLAAVCAALAQALHCHVCCGHE---HCESLVECAPTDKYCVITRATSPGGIL 57
Query: 61 VTFGHSLSKTCSPACPIPEGVNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAGLLL 120
V K+CSP CP V+ ++ +SCCQ CN SAA GL S L A +
Sbjct: 58 VM------KSCSPTCP-NSTVSSDSRALSVSCCQGSQCNRSAA-AGLVGSPGTLWASIAA 109
Query: 121 SLLPALLR 128
S L ALL+
Sbjct: 110 SQLWALLQ 117
>gi|239743642 PREDICTED: hypothetical protein XP_002342921 [Homo
sapiens]
Length = 190
Score = 60.5 bits (145), Expect = 4e-10
Identities = 45/128 (35%), Positives = 62/128 (48%), Gaps = 11/128 (8%)
Query: 1 MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNL 60
M++ L +LL A + A +L C C + +C C+ D YCV A++ G L
Sbjct: 1 MRLLLVLLLLAAVCAALAQALHCHVCCGHE---HCESLVECAPTDKYCVITRATSPGGIL 57
Query: 61 VTFGHSLSKTCSPACPIPEGVNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAGLLL 120
V K+CSP CP V+ ++ +SCCQ CN SAA GL S L A +
Sbjct: 58 VM------KSCSPTCP-NSTVSSDSRALSVSCCQGSQCNRSAA-AGLVGSPGTLWASIAA 109
Query: 121 SLLPALLR 128
S L ALL+
Sbjct: 110 SQLWALLQ 117
>gi|208431840 lymphocyte antigen 6 complex, locus H isoform b [Homo
sapiens]
Length = 161
Score = 58.2 bits (139), Expect = 2e-09
Identities = 43/134 (32%), Positives = 60/134 (44%), Gaps = 16/134 (11%)
Query: 8 LLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNLVTFGHSL 67
LLA LL A L C C ++ +C P C D C +V + + HS+
Sbjct: 34 LLAVLLCSAPAHGLWCQDCTLTTNSSHCT-PKQCQPSDTVCASVRITDPSSSRKD--HSV 90
Query: 68 SKTCSPACPIPEG----------VNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAG 117
+K C+ +C + +N G+ + + CC+ LCN +A G S L G
Sbjct: 91 NKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAG---HSPWALAGG 147
Query: 118 LLLSLLPALLRFGP 131
LLLSL PALL GP
Sbjct: 148 LLLSLGPALLWAGP 161
>gi|208431838 lymphocyte antigen 6 complex, locus H isoform a [Homo
sapiens]
Length = 140
Score = 58.2 bits (139), Expect = 2e-09
Identities = 43/134 (32%), Positives = 60/134 (44%), Gaps = 16/134 (11%)
Query: 8 LLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNLVTFGHSL 67
LLA LL A L C C ++ +C P C D C +V + + HS+
Sbjct: 13 LLAVLLCSAPAHGLWCQDCTLTTNSSHCT-PKQCQPSDTVCASVRITDPSSSRKD--HSV 69
Query: 68 SKTCSPACPIPEG----------VNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAG 117
+K C+ +C + +N G+ + + CC+ LCN +A G S L G
Sbjct: 70 NKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAG---HSPWALAGG 126
Query: 118 LLLSLLPALLRFGP 131
LLLSL PALL GP
Sbjct: 127 LLLSLGPALLWAGP 140
>gi|194440697 lymphocyte antigen 6 complex, locus H isoform b [Homo
sapiens]
Length = 161
Score = 58.2 bits (139), Expect = 2e-09
Identities = 43/134 (32%), Positives = 60/134 (44%), Gaps = 16/134 (11%)
Query: 8 LLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNLVTFGHSL 67
LLA LL A L C C ++ +C P C D C +V + + HS+
Sbjct: 34 LLAVLLCSAPAHGLWCQDCTLTTNSSHCT-PKQCQPSDTVCASVRITDPSSSRKD--HSV 90
Query: 68 SKTCSPACPIPEG----------VNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAG 117
+K C+ +C + +N G+ + + CC+ LCN +A G S L G
Sbjct: 91 NKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAG---HSPWALAGG 147
Query: 118 LLLSLLPALLRFGP 131
LLLSL PALL GP
Sbjct: 148 LLLSLGPALLWAGP 161
>gi|11321575 lymphocyte antigen 6 complex, locus D [Homo sapiens]
Length = 128
Score = 45.4 bits (106), Expect = 1e-05
Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 11/131 (8%)
Query: 1 MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGI-GN 59
M+ L +L A + A +L C C + + C +C +C T + + GN
Sbjct: 1 MRTALLLLAALAVATGPALTLRCHVCTSSSN---CKHSVVCPASSRFCKTTNTVEPLRGN 57
Query: 60 LVTFGHSLSKTCSPACPIPEGVNVGVASMGISCCQSFLCN---FSAADGGLRASVTLLGA 116
LV +++C+P+ + V+ G +S CCQ LCN +AA + + L
Sbjct: 58 LVK--KDCAESCTPSYTLQGQVSSGTSST--QCCQEDLCNEKLHNAAPTRTALAHSALSL 113
Query: 117 GLLLSLLPALL 127
GL LSLL +L
Sbjct: 114 GLALSLLAVIL 124
>gi|29294645 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens]
Length = 116
Score = 45.4 bits (106), Expect = 1e-05
Identities = 39/129 (30%), Positives = 56/129 (43%), Gaps = 15/129 (11%)
Query: 1 MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNL 60
M L ++L L+G+ A +L C C N C P C YC+T +
Sbjct: 1 MTPLLTLILVVLMGLPLAQALDCHVCAYNGDN--CFNPMRCPAMVAYCMTTRTYYTPTRM 58
Query: 61 VTFGHSLSKTCSPAC--PIPEGVNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAGL 118
+SK+C P C + +G + ++ SCCQ LCN + GL TL A +
Sbjct: 59 -----KVSKSCVPRCFETVYDGYSKHASTT--SCCQYDLCNGT----GLATPATLALAPI 107
Query: 119 LLSLLPALL 127
LL+ L LL
Sbjct: 108 LLATLWGLL 116
>gi|29337283 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens]
Length = 116
Score = 45.4 bits (106), Expect = 1e-05
Identities = 39/129 (30%), Positives = 56/129 (43%), Gaps = 15/129 (11%)
Query: 1 MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNL 60
M L ++L L+G+ A +L C C N C P C YC+T +
Sbjct: 1 MTPLLTLILVVLMGLPLAQALDCHVCAYNGDN--CFNPMRCPAMVAYCMTTRTYYTPTRM 58
Query: 61 VTFGHSLSKTCSPAC--PIPEGVNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAGL 118
+SK+C P C + +G + ++ SCCQ LCN + GL TL A +
Sbjct: 59 -----KVSKSCVPRCFETVYDGYSKHASTT--SCCQYDLCNGT----GLATPATLALAPI 107
Query: 119 LLSLLPALL 127
LL+ L LL
Sbjct: 108 LLATLWGLL 116
>gi|29294641 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens]
Length = 116
Score = 45.4 bits (106), Expect = 1e-05
Identities = 39/129 (30%), Positives = 56/129 (43%), Gaps = 15/129 (11%)
Query: 1 MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNL 60
M L ++L L+G+ A +L C C N C P C YC+T +
Sbjct: 1 MTPLLTLILVVLMGLPLAQALDCHVCAYNGDN--CFNPMRCPAMVAYCMTTRTYYTPTRM 58
Query: 61 VTFGHSLSKTCSPAC--PIPEGVNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAGL 118
+SK+C P C + +G + ++ SCCQ LCN + GL TL A +
Sbjct: 59 -----KVSKSCVPRCFETVYDGYSKHASTT--SCCQYDLCNGT----GLATPATLALAPI 107
Query: 119 LLSLLPALL 127
LL+ L LL
Sbjct: 108 LLATLWGLL 116
>gi|30794264 glycosylphosphatidylinositol anchored high density
lipoprotein binding protein 1 [Homo sapiens]
Length = 184
Score = 42.0 bits (97), Expect = 1e-04
Identities = 37/124 (29%), Positives = 48/124 (38%), Gaps = 20/124 (16%)
Query: 21 LMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGI--GNLVTFGHSLSKTCSPACPIP 78
L C++C + + C CS C T+ A G L T + +C P
Sbjct: 63 LRCYTCKSLPRDERCNLTQNCSHGQT-CTTLIAHGNTESGLLTTHSTWCTDSCQPITKTV 121
Query: 79 EGVNVGVASMGISCCQSFLCNF------------SAADGGLRASVTLLGAGLLLSLLPAL 126
EG V + +CCQS LCN GG R S +GA LLL+LL L
Sbjct: 122 EGTQVTM-----TCCQSSLCNVPPWQSSRVQDPTGKGAGGPRGSSETVGAALLLNLLAGL 176
Query: 127 LRFG 130
G
Sbjct: 177 GAMG 180
>gi|9966907 ARS component B precursor [Homo sapiens]
Length = 103
Score = 42.0 bits (97), Expect = 1e-04
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Query: 7 VLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNLVTFGHS 66
+LL A + +L C++C ++ C T C +D C+T +
Sbjct: 9 LLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVEAEYPFNQSPV 68
Query: 67 LSKTCSPACPIPEGVNVGVASMGISCCQSFLCN 99
++++CS +C + ++G A + I CC LCN
Sbjct: 69 VTRSCSSSCVATDPDSIGAAHL-IFCCFRDLCN 100
>gi|45387925 LY6/PLAUR domain containing 2 [Homo sapiens]
Length = 125
Score = 41.2 bits (95), Expect = 2e-04
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
Query: 8 LLAALLGV--ERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNLVTFGH 65
LLA +L E A +L C+ C C+ C+ + C T S I
Sbjct: 8 LLALVLAACGELAPALRCYVCPEPTGVSDCVTIATCTTNETMCKTTLYSREIVYPFQGDS 67
Query: 66 SLSKTCSPACPIPEGVNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAGLLLSLL 123
+++K+C+ C + +G ++ +SCC + LCN DG + GA LL LL
Sbjct: 68 TVTKSCASKCKPSDVDGIG-QTLPVSCCNTELCN---VDGAPALNSLHCGALTLLPLL 121
>gi|29337281 Ly-6 neurotoxin-like protein 1 isoform a [Homo sapiens]
Length = 131
Score = 37.4 bits (85), Expect = 0.003
Identities = 35/132 (26%), Positives = 47/132 (35%), Gaps = 36/132 (27%)
Query: 1 MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASA----- 55
M L ++L L+G+ A +L C C N C P C YC+T SA
Sbjct: 1 MTPLLTLILVVLMGLPLAQALDCHVCAYNGDN--CFNPMRCPAMVAYCMTTRTSAAEAIW 58
Query: 56 -----GIGN--------------LVTFGHSLSKT---------CSPACPIPEGVNVGVAS 87
G G + T LS T C CP + +G
Sbjct: 59 CHQCTGFGGCSHGSRCLRDSTHCVTTATRVLSNTEDLPLVTKMCHIGCPDIPSLGLG-PY 117
Query: 88 MGISCCQSFLCN 99
+ I+CCQ+ LCN
Sbjct: 118 VSIACCQTSLCN 129
>gi|29294643 secreted Ly6/uPAR related protein 2 isoform b [Homo
sapiens]
Length = 97
Score = 35.8 bits (81), Expect = 0.010
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 1 MKIFLPVLLAALLGVERASS--LMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIG 58
M++ +LLAA+L ++ A++ + C C C + C +CVT +A+ +
Sbjct: 1 MQLGTGLLLAAVLSLQLAAAEAIWCHQCTGFGG---CSHGSRCLRDSTHCVT-TATRVLS 56
Query: 59 NLVTFGHSLSKTCSPACPIPEGVNVGVASMGISCCQSFLCN 99
N ++K C CP + +G + I+CCQ+ LCN
Sbjct: 57 NTEDLP-LVTKMCHIGCPDIPSLGLG-PYVSIACCQTSLCN 95
>gi|4504615 insulin-like growth factor binding protein 1 precursor
[Homo sapiens]
Length = 259
Score = 32.3 bits (72), Expect = 0.11
Identities = 26/90 (28%), Positives = 34/90 (37%), Gaps = 23/90 (25%)
Query: 7 VLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNLVTFGHS 66
+LL +GV + C C +K L C C V+ SAG G
Sbjct: 14 LLLTVQVGVTAGAPWQCAPCSAEKLAL-------CPPVSASCSEVTRSAGCG-------- 58
Query: 67 LSKTCSPACPIPEGVNVGVA----SMGISC 92
C P C +P G GVA + G+SC
Sbjct: 59 ----CCPMCALPLGAACGVATARCARGLSC 84
>gi|123173777 keratin associated protein 5-8 [Homo sapiens]
Length = 187
Score = 31.2 bits (69), Expect = 0.24
Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 8/66 (12%)
Query: 35 CLKPTICSDQDNYCVTVSASAGIGNLVTFGHSLSKTCSPACPIPEGVNVGVASMGI--SC 92
C KP C Q + C S S+G G+ S C P C S G SC
Sbjct: 109 CCKP--CCSQSSCCKPCSCSSGCGSSCC----QSSCCKPCCSQSSCCKPCCCSSGCGSSC 162
Query: 93 CQSFLC 98
CQS C
Sbjct: 163 CQSSCC 168
>gi|60593038 keratin associated protein 5-4 [Homo sapiens]
Length = 288
Score = 30.8 bits (68), Expect = 0.32
Identities = 26/90 (28%), Positives = 31/90 (34%), Gaps = 23/90 (25%)
Query: 23 CFSCLNQKSNLYCLKPTICSD-------QDNYCVTVSASAGIGNLVTFGHSL------SK 69
C SC S C KP CS Q + C +S+G G+ S
Sbjct: 191 CGSC--GCSQCSCCKPCCCSSGCGSSCCQSSCCKPCCSSSGCGSSCCQSSCCKPYCCQSS 248
Query: 70 TCSPACPIPEGVNVGVASMGISCCQSFLCN 99
C P C + G SCCQS CN
Sbjct: 249 CCKPCC--------SSSGCGSSCCQSSCCN 270
>gi|60593036 keratin associated protein 5-3 [Homo sapiens]
Length = 238
Score = 30.4 bits (67), Expect = 0.41
Identities = 27/97 (27%), Positives = 34/97 (35%), Gaps = 11/97 (11%)
Query: 4 FLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNLVTF 63
+ P ++ G S C +Q S C KP C Q + C S+G G+
Sbjct: 132 YKPCCCSSGCGSSCCQSSCCKPSCSQSS---CCKP--CCSQSSCCKPCCCSSGCGSSCC- 185
Query: 64 GHSLSKTCSPACPIPEGVNVGVASMGI--SCCQSFLC 98
S C P C S G SCCQS C
Sbjct: 186 ---QSSCCKPCCSQSSCCKPCCCSSGCGSSCCQSSCC 219
>gi|19424138 sperm acrosomal membrane protein 14 [Homo sapiens]
Length = 124
Score = 29.6 bits (65), Expect = 0.70
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 41 CSDQDNYCVTVSASAGIGNLVTFGHSLSKTCSPACPIP-EGVNVGVASMGISCCQSFLCN 99
C D ++ + G G ++ G + +C P+ GV S+ +CC LCN
Sbjct: 41 CGDDEDCFTGHGVAPGTGPVINKGCLRATSCGLEEPVSYRGVTY---SLTTNCCTGRLCN 97
Query: 100 FSAADGGLRASVTL-LGAGLLL 120
+ + + A+ +L LG G+LL
Sbjct: 98 RAPSSQTVGATTSLALGLGMLL 119
>gi|239757302 PREDICTED: similar to R28379_1 [Homo sapiens]
Length = 204
Score = 28.5 bits (62), Expect = 1.6
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 19 SSLMCFSCLNQKSNLYCLKP-TICSDQDNYCVTVSASAGIG----NLVTFGHSLSKTC-- 71
+ LMC +C + C+ P T C+ ++N+CV++S G G + C
Sbjct: 122 NGLMCPACTASFRDK-CMGPMTHCTGKENHCVSLSGHVQAGIFKPRFAMRGCATESMCFT 180
Query: 72 SPACPIPEGVNV 83
P +P G NV
Sbjct: 181 KPGAEVPTGTNV 192
>gi|239751807 PREDICTED: similar to R28379_1 [Homo sapiens]
Length = 204
Score = 28.5 bits (62), Expect = 1.6
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 19 SSLMCFSCLNQKSNLYCLKP-TICSDQDNYCVTVSASAGIG----NLVTFGHSLSKTC-- 71
+ LMC +C + C+ P T C+ ++N+CV++S G G + C
Sbjct: 122 NGLMCPACTASFRDK-CMGPMTHCTGKENHCVSLSGHVQAGIFKPRFAMRGCATESMCFT 180
Query: 72 SPACPIPEGVNV 83
P +P G NV
Sbjct: 181 KPGAEVPTGTNV 192
>gi|239746298 PREDICTED: similar to R28379_1 [Homo sapiens]
Length = 204
Score = 28.5 bits (62), Expect = 1.6
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 19 SSLMCFSCLNQKSNLYCLKP-TICSDQDNYCVTVSASAGIG----NLVTFGHSLSKTC-- 71
+ LMC +C + C+ P T C+ ++N+CV++S G G + C
Sbjct: 122 NGLMCPACTASFRDK-CMGPMTHCTGKENHCVSLSGHVQAGIFKPRFAMRGCATESMCFT 180
Query: 72 SPACPIPEGVNV 83
P +P G NV
Sbjct: 181 KPGAEVPTGTNV 192
>gi|51243049 lymphocyte antigen 6 complex G6D [Homo sapiens]
Length = 133
Score = 28.5 bits (62), Expect = 1.6
Identities = 34/138 (24%), Positives = 49/138 (35%), Gaps = 27/138 (19%)
Query: 4 FLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNL--- 60
F+ +LL++LLG + + C++C S + C + C G+ +
Sbjct: 5 FVGILLSSLLGAALGNRMRCYNCGGSPS-------SSCKEAVTTCGEGRPQPGLEQIKLP 57
Query: 61 ----VTFGHSLSKTCSPACPIPEGVN-VGVASMG-------ISCCQSFLCNFSAADGGLR 108
VT H PAC N V S+G C LCN + A
Sbjct: 58 GNPPVTLIHQ-----HPACVAAHHCNQVETESVGDVTYPAHRDCYLGDLCNSAVASHVAP 112
Query: 109 ASVTLLGAGLLLSLLPAL 126
A + A L LLP L
Sbjct: 113 AGILAAAATALTCLLPGL 130
>gi|114431244 von Willebrand factor C and EGF domains [Homo sapiens]
Length = 955
Score = 28.5 bits (62), Expect = 1.6
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 35 CLKPTICSDQDN----YCVTVSASAG-IGNLVTFGHSLSKTCSPACPIPEGVNVGVASMG 89
C+ P +CS QD C G G +T H + + CP+ G ++ ++G
Sbjct: 80 CIAPNVCSCQDGEQGATCPETHGPCGEYGCDLTCNHGGCQEVARVCPV--GFSMTETAVG 137
Query: 90 ISCCQSFLCNFSAADG 105
I C C S+ +G
Sbjct: 138 IRCTDIDECVTSSCEG 153
>gi|239755460 PREDICTED: similar to mucin, partial [Homo sapiens]
Length = 1064
Score = 28.1 bits (61), Expect = 2.1
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 73 PACPIPEGVNVGVASMGISCCQSFLC 98
PACP+P V V A CC + C
Sbjct: 729 PACPLPGFVPVPAAPQAGQCCPQYSC 754
>gi|134031945 SCO-spondin [Homo sapiens]
Length = 5147
Score = 28.1 bits (61), Expect = 2.1
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 65 HSLSKTCSPACPI---PEGVNVGVASMGISCCQSFL 97
H+L+ CSP CP+ P+G V V G SCC L
Sbjct: 1992 HNLTAHCSPYCPLGSCPQGW-VLVEGTGESCCHCAL 2026
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.138 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,817,486
Number of Sequences: 37866
Number of extensions: 200599
Number of successful extensions: 683
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 651
Number of HSP's gapped (non-prelim): 49
length of query: 131
length of database: 18,247,518
effective HSP length: 91
effective length of query: 40
effective length of database: 14,801,712
effective search space: 592068480
effective search space used: 592068480
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.