Guide to the Human Genome
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Search of human proteins with 4505049

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4505049 lymphocyte antigen 6 complex, locus E [Homo sapiens]
         (131 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|187761331 lymphocyte antigen 6 complex, locus E [Homo sapiens]     266   4e-72
gi|4505049 lymphocyte antigen 6 complex, locus E [Homo sapiens]       266   4e-72
gi|5031995 prostate stem cell antigen preproprotein [Homo sapiens]     60   4e-10
gi|239754985 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo s...    60   4e-10
gi|239749508 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo s...    60   4e-10
gi|239743642 PREDICTED: hypothetical protein XP_002342921 [Homo ...    60   4e-10
gi|208431840 lymphocyte antigen 6 complex, locus H isoform b [Ho...    58   2e-09
gi|208431838 lymphocyte antigen 6 complex, locus H isoform a [Ho...    58   2e-09
gi|194440697 lymphocyte antigen 6 complex, locus H isoform b [Ho...    58   2e-09
gi|11321575 lymphocyte antigen 6 complex, locus D [Homo sapiens]       45   1e-05
gi|29294645 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens]    45   1e-05
gi|29337283 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens]    45   1e-05
gi|29294641 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens]    45   1e-05
gi|30794264 glycosylphosphatidylinositol anchored high density l...    42   1e-04
gi|9966907 ARS component B precursor [Homo sapiens]                    42   1e-04
gi|45387925 LY6/PLAUR domain containing 2 [Homo sapiens]               41   2e-04
gi|29337281 Ly-6 neurotoxin-like protein 1 isoform a [Homo sapiens]    37   0.003
gi|29294643 secreted Ly6/uPAR related protein 2 isoform b [Homo ...    36   0.010
gi|4504615 insulin-like growth factor binding protein 1 precurso...    32   0.11 
gi|123173777 keratin associated protein 5-8 [Homo sapiens]             31   0.24 
gi|60593038 keratin associated protein 5-4 [Homo sapiens]              31   0.32 
gi|60593036 keratin associated protein 5-3 [Homo sapiens]              30   0.41 
gi|19424138 sperm acrosomal membrane protein 14 [Homo sapiens]         30   0.70 
gi|239757302 PREDICTED: similar to R28379_1 [Homo sapiens]             28   1.6  
gi|239751807 PREDICTED: similar to R28379_1 [Homo sapiens]             28   1.6  
gi|239746298 PREDICTED: similar to R28379_1 [Homo sapiens]             28   1.6  
gi|51243049 lymphocyte antigen 6 complex G6D [Homo sapiens]            28   1.6  
gi|114431244 von Willebrand factor C and EGF domains [Homo sapiens]    28   1.6  
gi|239755460 PREDICTED: similar to mucin, partial [Homo sapiens]       28   2.1  
gi|134031945 SCO-spondin [Homo sapiens]                                28   2.1  

>gi|187761331 lymphocyte antigen 6 complex, locus E [Homo sapiens]
          Length = 131

 Score =  266 bits (679), Expect = 4e-72
 Identities = 131/131 (100%), Positives = 131/131 (100%)

Query: 1   MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNL 60
           MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNL
Sbjct: 1   MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNL 60

Query: 61  VTFGHSLSKTCSPACPIPEGVNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAGLLL 120
           VTFGHSLSKTCSPACPIPEGVNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAGLLL
Sbjct: 61  VTFGHSLSKTCSPACPIPEGVNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAGLLL 120

Query: 121 SLLPALLRFGP 131
           SLLPALLRFGP
Sbjct: 121 SLLPALLRFGP 131


>gi|4505049 lymphocyte antigen 6 complex, locus E [Homo sapiens]
          Length = 131

 Score =  266 bits (679), Expect = 4e-72
 Identities = 131/131 (100%), Positives = 131/131 (100%)

Query: 1   MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNL 60
           MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNL
Sbjct: 1   MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNL 60

Query: 61  VTFGHSLSKTCSPACPIPEGVNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAGLLL 120
           VTFGHSLSKTCSPACPIPEGVNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAGLLL
Sbjct: 61  VTFGHSLSKTCSPACPIPEGVNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAGLLL 120

Query: 121 SLLPALLRFGP 131
           SLLPALLRFGP
Sbjct: 121 SLLPALLRFGP 131


>gi|5031995 prostate stem cell antigen preproprotein [Homo sapiens]
          Length = 123

 Score = 60.5 bits (145), Expect = 4e-10
 Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 15/133 (11%)

Query: 1   MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNL 60
           MK  L  LL A L ++  ++L+C+SC  Q SN  CL+   C+     C T    A +G L
Sbjct: 1   MKAVLLALLMAGLALQPGTALLCYSCKAQVSNEDCLQVENCTQLGEQCWTARIRA-VGLL 59

Query: 61  VTFGHSLSKTCSPACPIPEGVNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAGLLL 120
                 +SK CS  C + +  +  V    I+CC + LCN S A         L  A  +L
Sbjct: 60  TV----ISKGCSLNC-VDDSQDYYVGKKNITCCDTDLCNASGAH-------ALQPAAAIL 107

Query: 121 SLLPA--LLRFGP 131
           +LLPA  LL +GP
Sbjct: 108 ALLPALGLLLWGP 120


>gi|239754985 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo
           sapiens]
          Length = 190

 Score = 60.5 bits (145), Expect = 4e-10
 Identities = 45/128 (35%), Positives = 62/128 (48%), Gaps = 11/128 (8%)

Query: 1   MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNL 60
           M++ L +LL A +    A +L C  C   +   +C     C+  D YCV   A++  G L
Sbjct: 1   MRLLLVLLLLAAVCAALAQALHCHVCCGHE---HCESLVECAPTDKYCVITRATSPGGIL 57

Query: 61  VTFGHSLSKTCSPACPIPEGVNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAGLLL 120
           V       K+CSP CP    V+    ++ +SCCQ   CN SAA  GL  S   L A +  
Sbjct: 58  VM------KSCSPTCP-NSTVSSDSRALSVSCCQGSQCNRSAA-AGLVGSPGTLWASIAA 109

Query: 121 SLLPALLR 128
           S L ALL+
Sbjct: 110 SQLWALLQ 117


>gi|239749508 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo
           sapiens]
          Length = 190

 Score = 60.5 bits (145), Expect = 4e-10
 Identities = 45/128 (35%), Positives = 62/128 (48%), Gaps = 11/128 (8%)

Query: 1   MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNL 60
           M++ L +LL A +    A +L C  C   +   +C     C+  D YCV   A++  G L
Sbjct: 1   MRLLLVLLLLAAVCAALAQALHCHVCCGHE---HCESLVECAPTDKYCVITRATSPGGIL 57

Query: 61  VTFGHSLSKTCSPACPIPEGVNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAGLLL 120
           V       K+CSP CP    V+    ++ +SCCQ   CN SAA  GL  S   L A +  
Sbjct: 58  VM------KSCSPTCP-NSTVSSDSRALSVSCCQGSQCNRSAA-AGLVGSPGTLWASIAA 109

Query: 121 SLLPALLR 128
           S L ALL+
Sbjct: 110 SQLWALLQ 117


>gi|239743642 PREDICTED: hypothetical protein XP_002342921 [Homo
           sapiens]
          Length = 190

 Score = 60.5 bits (145), Expect = 4e-10
 Identities = 45/128 (35%), Positives = 62/128 (48%), Gaps = 11/128 (8%)

Query: 1   MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNL 60
           M++ L +LL A +    A +L C  C   +   +C     C+  D YCV   A++  G L
Sbjct: 1   MRLLLVLLLLAAVCAALAQALHCHVCCGHE---HCESLVECAPTDKYCVITRATSPGGIL 57

Query: 61  VTFGHSLSKTCSPACPIPEGVNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAGLLL 120
           V       K+CSP CP    V+    ++ +SCCQ   CN SAA  GL  S   L A +  
Sbjct: 58  VM------KSCSPTCP-NSTVSSDSRALSVSCCQGSQCNRSAA-AGLVGSPGTLWASIAA 109

Query: 121 SLLPALLR 128
           S L ALL+
Sbjct: 110 SQLWALLQ 117


>gi|208431840 lymphocyte antigen 6 complex, locus H isoform b [Homo
           sapiens]
          Length = 161

 Score = 58.2 bits (139), Expect = 2e-09
 Identities = 43/134 (32%), Positives = 60/134 (44%), Gaps = 16/134 (11%)

Query: 8   LLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNLVTFGHSL 67
           LLA LL    A  L C  C    ++ +C  P  C   D  C +V  +    +     HS+
Sbjct: 34  LLAVLLCSAPAHGLWCQDCTLTTNSSHCT-PKQCQPSDTVCASVRITDPSSSRKD--HSV 90

Query: 68  SKTCSPACPIPEG----------VNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAG 117
           +K C+ +C   +           +N G+  + + CC+  LCN +A  G    S   L  G
Sbjct: 91  NKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAG---HSPWALAGG 147

Query: 118 LLLSLLPALLRFGP 131
           LLLSL PALL  GP
Sbjct: 148 LLLSLGPALLWAGP 161


>gi|208431838 lymphocyte antigen 6 complex, locus H isoform a [Homo
           sapiens]
          Length = 140

 Score = 58.2 bits (139), Expect = 2e-09
 Identities = 43/134 (32%), Positives = 60/134 (44%), Gaps = 16/134 (11%)

Query: 8   LLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNLVTFGHSL 67
           LLA LL    A  L C  C    ++ +C  P  C   D  C +V  +    +     HS+
Sbjct: 13  LLAVLLCSAPAHGLWCQDCTLTTNSSHCT-PKQCQPSDTVCASVRITDPSSSRKD--HSV 69

Query: 68  SKTCSPACPIPEG----------VNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAG 117
           +K C+ +C   +           +N G+  + + CC+  LCN +A  G    S   L  G
Sbjct: 70  NKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAG---HSPWALAGG 126

Query: 118 LLLSLLPALLRFGP 131
           LLLSL PALL  GP
Sbjct: 127 LLLSLGPALLWAGP 140


>gi|194440697 lymphocyte antigen 6 complex, locus H isoform b [Homo
           sapiens]
          Length = 161

 Score = 58.2 bits (139), Expect = 2e-09
 Identities = 43/134 (32%), Positives = 60/134 (44%), Gaps = 16/134 (11%)

Query: 8   LLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNLVTFGHSL 67
           LLA LL    A  L C  C    ++ +C  P  C   D  C +V  +    +     HS+
Sbjct: 34  LLAVLLCSAPAHGLWCQDCTLTTNSSHCT-PKQCQPSDTVCASVRITDPSSSRKD--HSV 90

Query: 68  SKTCSPACPIPEG----------VNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAG 117
           +K C+ +C   +           +N G+  + + CC+  LCN +A  G    S   L  G
Sbjct: 91  NKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAG---HSPWALAGG 147

Query: 118 LLLSLLPALLRFGP 131
           LLLSL PALL  GP
Sbjct: 148 LLLSLGPALLWAGP 161


>gi|11321575 lymphocyte antigen 6 complex, locus D [Homo sapiens]
          Length = 128

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 11/131 (8%)

Query: 1   MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGI-GN 59
           M+  L +L A  +    A +L C  C +  +   C    +C     +C T +    + GN
Sbjct: 1   MRTALLLLAALAVATGPALTLRCHVCTSSSN---CKHSVVCPASSRFCKTTNTVEPLRGN 57

Query: 60  LVTFGHSLSKTCSPACPIPEGVNVGVASMGISCCQSFLCN---FSAADGGLRASVTLLGA 116
           LV      +++C+P+  +   V+ G +S    CCQ  LCN    +AA      + + L  
Sbjct: 58  LVK--KDCAESCTPSYTLQGQVSSGTSST--QCCQEDLCNEKLHNAAPTRTALAHSALSL 113

Query: 117 GLLLSLLPALL 127
           GL LSLL  +L
Sbjct: 114 GLALSLLAVIL 124


>gi|29294645 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens]
          Length = 116

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 39/129 (30%), Positives = 56/129 (43%), Gaps = 15/129 (11%)

Query: 1   MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNL 60
           M   L ++L  L+G+  A +L C  C     N  C  P  C     YC+T         +
Sbjct: 1   MTPLLTLILVVLMGLPLAQALDCHVCAYNGDN--CFNPMRCPAMVAYCMTTRTYYTPTRM 58

Query: 61  VTFGHSLSKTCSPAC--PIPEGVNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAGL 118
                 +SK+C P C   + +G +   ++   SCCQ  LCN +    GL    TL  A +
Sbjct: 59  -----KVSKSCVPRCFETVYDGYSKHASTT--SCCQYDLCNGT----GLATPATLALAPI 107

Query: 119 LLSLLPALL 127
           LL+ L  LL
Sbjct: 108 LLATLWGLL 116


>gi|29337283 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens]
          Length = 116

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 39/129 (30%), Positives = 56/129 (43%), Gaps = 15/129 (11%)

Query: 1   MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNL 60
           M   L ++L  L+G+  A +L C  C     N  C  P  C     YC+T         +
Sbjct: 1   MTPLLTLILVVLMGLPLAQALDCHVCAYNGDN--CFNPMRCPAMVAYCMTTRTYYTPTRM 58

Query: 61  VTFGHSLSKTCSPAC--PIPEGVNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAGL 118
                 +SK+C P C   + +G +   ++   SCCQ  LCN +    GL    TL  A +
Sbjct: 59  -----KVSKSCVPRCFETVYDGYSKHASTT--SCCQYDLCNGT----GLATPATLALAPI 107

Query: 119 LLSLLPALL 127
           LL+ L  LL
Sbjct: 108 LLATLWGLL 116


>gi|29294641 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens]
          Length = 116

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 39/129 (30%), Positives = 56/129 (43%), Gaps = 15/129 (11%)

Query: 1   MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNL 60
           M   L ++L  L+G+  A +L C  C     N  C  P  C     YC+T         +
Sbjct: 1   MTPLLTLILVVLMGLPLAQALDCHVCAYNGDN--CFNPMRCPAMVAYCMTTRTYYTPTRM 58

Query: 61  VTFGHSLSKTCSPAC--PIPEGVNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAGL 118
                 +SK+C P C   + +G +   ++   SCCQ  LCN +    GL    TL  A +
Sbjct: 59  -----KVSKSCVPRCFETVYDGYSKHASTT--SCCQYDLCNGT----GLATPATLALAPI 107

Query: 119 LLSLLPALL 127
           LL+ L  LL
Sbjct: 108 LLATLWGLL 116


>gi|30794264 glycosylphosphatidylinositol anchored high density
           lipoprotein binding protein 1 [Homo sapiens]
          Length = 184

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 37/124 (29%), Positives = 48/124 (38%), Gaps = 20/124 (16%)

Query: 21  LMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGI--GNLVTFGHSLSKTCSPACPIP 78
           L C++C +   +  C     CS     C T+ A      G L T     + +C P     
Sbjct: 63  LRCYTCKSLPRDERCNLTQNCSHGQT-CTTLIAHGNTESGLLTTHSTWCTDSCQPITKTV 121

Query: 79  EGVNVGVASMGISCCQSFLCNF------------SAADGGLRASVTLLGAGLLLSLLPAL 126
           EG  V +     +CCQS LCN                 GG R S   +GA LLL+LL  L
Sbjct: 122 EGTQVTM-----TCCQSSLCNVPPWQSSRVQDPTGKGAGGPRGSSETVGAALLLNLLAGL 176

Query: 127 LRFG 130
              G
Sbjct: 177 GAMG 180


>gi|9966907 ARS component B precursor [Homo sapiens]
          Length = 103

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 1/93 (1%)

Query: 7   VLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNLVTFGHS 66
           +LL A   +    +L C++C    ++  C   T C  +D  C+T   +            
Sbjct: 9   LLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVEAEYPFNQSPV 68

Query: 67  LSKTCSPACPIPEGVNVGVASMGISCCQSFLCN 99
           ++++CS +C   +  ++G A + I CC   LCN
Sbjct: 69  VTRSCSSSCVATDPDSIGAAHL-IFCCFRDLCN 100


>gi|45387925 LY6/PLAUR domain containing 2 [Homo sapiens]
          Length = 125

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 6/118 (5%)

Query: 8   LLAALLGV--ERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNLVTFGH 65
           LLA +L    E A +L C+ C        C+    C+  +  C T   S  I        
Sbjct: 8   LLALVLAACGELAPALRCYVCPEPTGVSDCVTIATCTTNETMCKTTLYSREIVYPFQGDS 67

Query: 66  SLSKTCSPACPIPEGVNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAGLLLSLL 123
           +++K+C+  C   +   +G  ++ +SCC + LCN    DG    +    GA  LL LL
Sbjct: 68  TVTKSCASKCKPSDVDGIG-QTLPVSCCNTELCN---VDGAPALNSLHCGALTLLPLL 121


>gi|29337281 Ly-6 neurotoxin-like protein 1 isoform a [Homo sapiens]
          Length = 131

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 35/132 (26%), Positives = 47/132 (35%), Gaps = 36/132 (27%)

Query: 1   MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASA----- 55
           M   L ++L  L+G+  A +L C  C     N  C  P  C     YC+T   SA     
Sbjct: 1   MTPLLTLILVVLMGLPLAQALDCHVCAYNGDN--CFNPMRCPAMVAYCMTTRTSAAEAIW 58

Query: 56  -----GIGN--------------LVTFGHSLSKT---------CSPACPIPEGVNVGVAS 87
                G G               + T    LS T         C   CP    + +G   
Sbjct: 59  CHQCTGFGGCSHGSRCLRDSTHCVTTATRVLSNTEDLPLVTKMCHIGCPDIPSLGLG-PY 117

Query: 88  MGISCCQSFLCN 99
           + I+CCQ+ LCN
Sbjct: 118 VSIACCQTSLCN 129


>gi|29294643 secreted Ly6/uPAR related protein 2 isoform b [Homo
          sapiens]
          Length = 97

 Score = 35.8 bits (81), Expect = 0.010
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 8/101 (7%)

Query: 1  MKIFLPVLLAALLGVERASS--LMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIG 58
          M++   +LLAA+L ++ A++  + C  C        C   + C     +CVT +A+  + 
Sbjct: 1  MQLGTGLLLAAVLSLQLAAAEAIWCHQCTGFGG---CSHGSRCLRDSTHCVT-TATRVLS 56

Query: 59 NLVTFGHSLSKTCSPACPIPEGVNVGVASMGISCCQSFLCN 99
          N       ++K C   CP    + +G   + I+CCQ+ LCN
Sbjct: 57 NTEDLP-LVTKMCHIGCPDIPSLGLG-PYVSIACCQTSLCN 95


>gi|4504615 insulin-like growth factor binding protein 1 precursor
          [Homo sapiens]
          Length = 259

 Score = 32.3 bits (72), Expect = 0.11
 Identities = 26/90 (28%), Positives = 34/90 (37%), Gaps = 23/90 (25%)

Query: 7  VLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNLVTFGHS 66
          +LL   +GV   +   C  C  +K  L       C      C  V+ SAG G        
Sbjct: 14 LLLTVQVGVTAGAPWQCAPCSAEKLAL-------CPPVSASCSEVTRSAGCG-------- 58

Query: 67 LSKTCSPACPIPEGVNVGVA----SMGISC 92
              C P C +P G   GVA    + G+SC
Sbjct: 59 ----CCPMCALPLGAACGVATARCARGLSC 84


>gi|123173777 keratin associated protein 5-8 [Homo sapiens]
          Length = 187

 Score = 31.2 bits (69), Expect = 0.24
 Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 8/66 (12%)

Query: 35  CLKPTICSDQDNYCVTVSASAGIGNLVTFGHSLSKTCSPACPIPEGVNVGVASMGI--SC 92
           C KP  C  Q + C   S S+G G+        S  C P C           S G   SC
Sbjct: 109 CCKP--CCSQSSCCKPCSCSSGCGSSCC----QSSCCKPCCSQSSCCKPCCCSSGCGSSC 162

Query: 93  CQSFLC 98
           CQS  C
Sbjct: 163 CQSSCC 168


>gi|60593038 keratin associated protein 5-4 [Homo sapiens]
          Length = 288

 Score = 30.8 bits (68), Expect = 0.32
 Identities = 26/90 (28%), Positives = 31/90 (34%), Gaps = 23/90 (25%)

Query: 23  CFSCLNQKSNLYCLKPTICSD-------QDNYCVTVSASAGIGNLVTFGHSL------SK 69
           C SC    S   C KP  CS        Q + C    +S+G G+              S 
Sbjct: 191 CGSC--GCSQCSCCKPCCCSSGCGSSCCQSSCCKPCCSSSGCGSSCCQSSCCKPYCCQSS 248

Query: 70  TCSPACPIPEGVNVGVASMGISCCQSFLCN 99
            C P C          +  G SCCQS  CN
Sbjct: 249 CCKPCC--------SSSGCGSSCCQSSCCN 270


>gi|60593036 keratin associated protein 5-3 [Homo sapiens]
          Length = 238

 Score = 30.4 bits (67), Expect = 0.41
 Identities = 27/97 (27%), Positives = 34/97 (35%), Gaps = 11/97 (11%)

Query: 4   FLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNLVTF 63
           + P   ++  G     S  C    +Q S   C KP  C  Q + C     S+G G+    
Sbjct: 132 YKPCCCSSGCGSSCCQSSCCKPSCSQSS---CCKP--CCSQSSCCKPCCCSSGCGSSCC- 185

Query: 64  GHSLSKTCSPACPIPEGVNVGVASMGI--SCCQSFLC 98
               S  C P C           S G   SCCQS  C
Sbjct: 186 ---QSSCCKPCCSQSSCCKPCCCSSGCGSSCCQSSCC 219


>gi|19424138 sperm acrosomal membrane protein 14 [Homo sapiens]
          Length = 124

 Score = 29.6 bits (65), Expect = 0.70
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 5/82 (6%)

Query: 41  CSDQDNYCVTVSASAGIGNLVTFGHSLSKTCSPACPIP-EGVNVGVASMGISCCQSFLCN 99
           C D ++       + G G ++  G   + +C    P+   GV     S+  +CC   LCN
Sbjct: 41  CGDDEDCFTGHGVAPGTGPVINKGCLRATSCGLEEPVSYRGVTY---SLTTNCCTGRLCN 97

Query: 100 FSAADGGLRASVTL-LGAGLLL 120
            + +   + A+ +L LG G+LL
Sbjct: 98  RAPSSQTVGATTSLALGLGMLL 119


>gi|239757302 PREDICTED: similar to R28379_1 [Homo sapiens]
          Length = 204

 Score = 28.5 bits (62), Expect = 1.6
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 8/72 (11%)

Query: 19  SSLMCFSCLNQKSNLYCLKP-TICSDQDNYCVTVSASAGIG----NLVTFGHSLSKTC-- 71
           + LMC +C     +  C+ P T C+ ++N+CV++S     G         G +    C  
Sbjct: 122 NGLMCPACTASFRDK-CMGPMTHCTGKENHCVSLSGHVQAGIFKPRFAMRGCATESMCFT 180

Query: 72  SPACPIPEGVNV 83
            P   +P G NV
Sbjct: 181 KPGAEVPTGTNV 192


>gi|239751807 PREDICTED: similar to R28379_1 [Homo sapiens]
          Length = 204

 Score = 28.5 bits (62), Expect = 1.6
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 8/72 (11%)

Query: 19  SSLMCFSCLNQKSNLYCLKP-TICSDQDNYCVTVSASAGIG----NLVTFGHSLSKTC-- 71
           + LMC +C     +  C+ P T C+ ++N+CV++S     G         G +    C  
Sbjct: 122 NGLMCPACTASFRDK-CMGPMTHCTGKENHCVSLSGHVQAGIFKPRFAMRGCATESMCFT 180

Query: 72  SPACPIPEGVNV 83
            P   +P G NV
Sbjct: 181 KPGAEVPTGTNV 192


>gi|239746298 PREDICTED: similar to R28379_1 [Homo sapiens]
          Length = 204

 Score = 28.5 bits (62), Expect = 1.6
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 8/72 (11%)

Query: 19  SSLMCFSCLNQKSNLYCLKP-TICSDQDNYCVTVSASAGIG----NLVTFGHSLSKTC-- 71
           + LMC +C     +  C+ P T C+ ++N+CV++S     G         G +    C  
Sbjct: 122 NGLMCPACTASFRDK-CMGPMTHCTGKENHCVSLSGHVQAGIFKPRFAMRGCATESMCFT 180

Query: 72  SPACPIPEGVNV 83
            P   +P G NV
Sbjct: 181 KPGAEVPTGTNV 192


>gi|51243049 lymphocyte antigen 6 complex G6D [Homo sapiens]
          Length = 133

 Score = 28.5 bits (62), Expect = 1.6
 Identities = 34/138 (24%), Positives = 49/138 (35%), Gaps = 27/138 (19%)

Query: 4   FLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNL--- 60
           F+ +LL++LLG    + + C++C    S       + C +    C       G+  +   
Sbjct: 5   FVGILLSSLLGAALGNRMRCYNCGGSPS-------SSCKEAVTTCGEGRPQPGLEQIKLP 57

Query: 61  ----VTFGHSLSKTCSPACPIPEGVN-VGVASMG-------ISCCQSFLCNFSAADGGLR 108
               VT  H       PAC      N V   S+G         C    LCN + A     
Sbjct: 58  GNPPVTLIHQ-----HPACVAAHHCNQVETESVGDVTYPAHRDCYLGDLCNSAVASHVAP 112

Query: 109 ASVTLLGAGLLLSLLPAL 126
           A +    A  L  LLP L
Sbjct: 113 AGILAAAATALTCLLPGL 130


>gi|114431244 von Willebrand factor C and EGF domains [Homo sapiens]
          Length = 955

 Score = 28.5 bits (62), Expect = 1.6
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 7/76 (9%)

Query: 35  CLKPTICSDQDN----YCVTVSASAG-IGNLVTFGHSLSKTCSPACPIPEGVNVGVASMG 89
           C+ P +CS QD      C       G  G  +T  H   +  +  CP+  G ++   ++G
Sbjct: 80  CIAPNVCSCQDGEQGATCPETHGPCGEYGCDLTCNHGGCQEVARVCPV--GFSMTETAVG 137

Query: 90  ISCCQSFLCNFSAADG 105
           I C     C  S+ +G
Sbjct: 138 IRCTDIDECVTSSCEG 153


>gi|239755460 PREDICTED: similar to mucin, partial [Homo sapiens]
          Length = 1064

 Score = 28.1 bits (61), Expect = 2.1
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query: 73  PACPIPEGVNVGVASMGISCCQSFLC 98
           PACP+P  V V  A     CC  + C
Sbjct: 729 PACPLPGFVPVPAAPQAGQCCPQYSC 754


>gi|134031945 SCO-spondin [Homo sapiens]
          Length = 5147

 Score = 28.1 bits (61), Expect = 2.1
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 4/36 (11%)

Query: 65   HSLSKTCSPACPI---PEGVNVGVASMGISCCQSFL 97
            H+L+  CSP CP+   P+G  V V   G SCC   L
Sbjct: 1992 HNLTAHCSPYCPLGSCPQGW-VLVEGTGESCCHCAL 2026


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.138    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,817,486
Number of Sequences: 37866
Number of extensions: 200599
Number of successful extensions: 683
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 651
Number of HSP's gapped (non-prelim): 49
length of query: 131
length of database: 18,247,518
effective HSP length: 91
effective length of query: 40
effective length of database: 14,801,712
effective search space: 592068480
effective search space used: 592068480
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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