Guide to the Human Genome
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Name: LY6H Sequence: fasta or formatted (161aa) NCBI GI: 208431840
Description:

lymphocyte antigen 6 complex, locus H isoform b

Referenced in:

Additional Genes in Development

Other entries for this name:
alt mRNA [161aa] lymphocyte antigen 6 complex, locus H isoform b
alt prot [140aa] lymphocyte antigen 6 complex, locus H isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.8         19           2
 C cysteine            6.8         11           2
 D aspartate           5.6          9           1
 E glutamate           0.6          1           1
 F phenylalanine       2.5          4           2
 G glycine             7.5         12           2
 H histidine           3.1          5           1
 I isoleucine          1.9          3           1
 K lysine              4.3          7           1
 L leucine            12.4         20           3
 M methionine          3.1          5           1
 N asparagine          2.5          4           1
 P proline             8.1         13           1
 Q glutamine           2.5          4           1
 R arginine            5.0          8           1
 S serine             10.6         17           3
 T threonine           5.0          8           2
 V valine              4.3          7           1
 W tryptophan          1.9          3           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   lymphocyte antigen 6 complex, locus H isoform b [Ho... 
LY6H                  1.000   lymphocyte antigen 6 complex, locus H isoform b [Ho...
LY6H                  0.870   lymphocyte antigen 6 complex, locus H isoform a [Ho...
LY6E                  0.105   lymphocyte antigen 6 complex, locus E 
LY6E                  0.105   lymphocyte antigen 6 complex, locus E 
LOC100292543          0.070   PREDICTED: similar to RIKEN cDNA D730001G18 
LOC100288207          0.070   PREDICTED: similar to RIKEN cDNA D730001G18 
LOC100288207          0.070   PREDICTED: hypothetical protein XP_002342921 
LY6D                  0.070   lymphocyte antigen 6 complex, locus D 
PSCA                  0.060   prostate stem cell antigen preproprotein 
LYNX1                 0.057   secreted Ly6/uPAR related protein 2 isoform b 
LYPD2                 0.048   LY6/PLAUR domain containing 2 
LYNX1                 0.035   Ly-6 neurotoxin-like protein 1 isoform c 
LYNX1                 0.035   Ly-6 neurotoxin-like protein 1 isoform c 
LYNX1                 0.035   Ly-6 neurotoxin-like protein 1 isoform c 
LYNX1                 0.035   Ly-6 neurotoxin-like protein 1 isoform a 
SLURP1                0.029   ARS component B precursor 
SRCAP                 0.019   Snf2-related CBP activator protein 
NOTCH2                0.016   notch 2 preproprotein 
LRP1                  0.016   low density lipoprotein-related protein 1 
LOC100291118          0.016   PREDICTED: hypothetical protein XP_002347351 
LOC100287737          0.016   PREDICTED: hypothetical protein XP_002343203 
LRP2                  0.016   low density lipoprotein-related protein 2 
AGRN                  0.016   agrin 
LOC401934             0.016   PREDICTED: hypothetical protein 
ADNP                  0.016   activity-dependent neuroprotector 
ADNP                  0.016   activity-dependent neuroprotector 
SPRY2                 0.016   sprouty 2 
FBLN2                 0.016   fibulin 2 isoform b precursor 
FBLN2                 0.016   fibulin 2 isoform a precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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