Guide to the Human Genome
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Name: SLURP1 Sequence: fasta or formatted (103aa) NCBI GI: 9966907
Description:

ARS component B precursor

Referenced in:

Additional Genes in Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7         11           2
 C cysteine           10.7         11           2
 D aspartate           3.9          4           1
 E glutamate           5.8          6           1
 F phenylalanine       2.9          3           1
 G glycine             2.9          3           1
 H histidine           1.0          1           1
 I isoleucine          2.9          3           1
 K lysine              2.9          3           1
 L leucine             7.8          8           3
 M methionine          3.9          4           1
 N asparagine          1.9          2           1
 P proline             4.9          5           1
 Q glutamine           1.9          2           1
 R arginine            4.9          5           1
 S serine             10.7         11           3
 T threonine           9.7         10           2
 V valine              6.8          7           2
 W tryptophan          1.9          2           1
 Y tyrosine            1.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ARS component B precursor 
LYPD2                 0.297   LY6/PLAUR domain containing 2 
PSCA                  0.128   prostate stem cell antigen preproprotein 
LOC100292543          0.092   PREDICTED: similar to RIKEN cDNA D730001G18 
LOC100288207          0.092   PREDICTED: similar to RIKEN cDNA D730001G18 
LOC100288207          0.092   PREDICTED: hypothetical protein XP_002342921 
LY6E                  0.087   lymphocyte antigen 6 complex, locus E 
LY6E                  0.087   lymphocyte antigen 6 complex, locus E 
CD59                  0.082   CD59 antigen preproprotein 
CD59                  0.082   CD59 antigen preproprotein 
CD59                  0.082   CD59 antigen preproprotein 
CD59                  0.082   CD59 antigen preproprotein 
CD59                  0.082   CD59 antigen preproprotein 
CD59                  0.082   CD59 antigen preproprotein 
CD59                  0.082   CD59 antigen preproprotein 
CD59                  0.082   CD59 antigen preproprotein 
LYNX1                 0.082   secreted Ly6/uPAR related protein 2 isoform b 
LYNX1                 0.067   Ly-6 neurotoxin-like protein 1 isoform a 
LY6D                  0.067   lymphocyte antigen 6 complex, locus D 
LYNX1                 0.056   Ly-6 neurotoxin-like protein 1 isoform c 
LYNX1                 0.056   Ly-6 neurotoxin-like protein 1 isoform c 
LYNX1                 0.056   Ly-6 neurotoxin-like protein 1 isoform c 
LY6H                  0.046   lymphocyte antigen 6 complex, locus H isoform b [Ho...
LY6H                  0.046   lymphocyte antigen 6 complex, locus H isoform a [Ho...
LY6H                  0.046   lymphocyte antigen 6 complex, locus H isoform b [Ho...
GPIHBP1               0.041   glycosylphosphatidylinositol anchored high density l...
MUC2                  0.026   mucin 2 precursor 
LOC100294420          0.026   PREDICTED: similar to mucin 2 
LYPD3                 0.026   GPI-anchored metastasis-associated protein homolog [...
KRTAP9-2              0.021   keratin associated protein 9.2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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