Guide to the Human Genome
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Name: LYNX1 Sequence: fasta or formatted (116aa) NCBI GI: 29337283
Description:

Ly-6 neurotoxin-like protein 1 isoform c

Referenced in:

Additional Genes in Development

Other entries for this name:
alt mRNA [116aa] Ly-6 neurotoxin-like protein 1 isoform c
alt prot [97aa] secreted Ly6/uPAR related protein 2 isoform b
alt mRNA [116aa] Ly-6 neurotoxin-like protein 1 isoform c
alt prot [131aa] Ly-6 neurotoxin-like protein 1 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         11           1
 C cysteine            8.6         10           2
 D aspartate           3.4          4           1
 E glutamate           0.9          1           1
 F phenylalanine       1.7          2           1
 G glycine             5.2          6           1
 H histidine           1.7          2           1
 I isoleucine          1.7          2           1
 K lysine              2.6          3           1
 L leucine            14.7         17           2
 M methionine          5.2          6           1
 N asparagine          3.4          4           1
 P proline             6.9          8           1
 Q glutamine           1.7          2           1
 R arginine            3.4          4           1
 S serine              4.3          5           1
 T threonine          12.1         14           2
 V valine              6.0          7           2
 W tryptophan          0.9          1           1
 Y tyrosine            6.0          7           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Ly-6 neurotoxin-like protein 1 isoform c 
LYNX1                 1.000   Ly-6 neurotoxin-like protein 1 isoform c 
LYNX1                 1.000   Ly-6 neurotoxin-like protein 1 isoform c 
LYNX1                 0.388   Ly-6 neurotoxin-like protein 1 isoform a 
LOC100292543          0.174   PREDICTED: similar to RIKEN cDNA D730001G18 
LOC100288207          0.174   PREDICTED: similar to RIKEN cDNA D730001G18 
LOC100288207          0.174   PREDICTED: hypothetical protein XP_002342921 
LY6D                  0.143   lymphocyte antigen 6 complex, locus D 
PSCA                  0.121   prostate stem cell antigen preproprotein 
LY6E                  0.089   lymphocyte antigen 6 complex, locus E 
LY6E                  0.089   lymphocyte antigen 6 complex, locus E 
LYPD2                 0.076   LY6/PLAUR domain containing 2 
LYNX1                 0.067   secreted Ly6/uPAR related protein 2 isoform b 
GML                   0.062   glycosylphosphatidylinositol anchored molecule like p...
CD59                  0.062   CD59 antigen preproprotein 
CD59                  0.062   CD59 antigen preproprotein 
CD59                  0.062   CD59 antigen preproprotein 
CD59                  0.062   CD59 antigen preproprotein 
CD59                  0.062   CD59 antigen preproprotein 
CD59                  0.062   CD59 antigen preproprotein 
CD59                  0.062   CD59 antigen preproprotein 
CD59                  0.062   CD59 antigen preproprotein 
LYPD6                 0.062   LY6/PLAUR domain containing 6 
LYPD6B                0.054   LY6/PLAUR domain containing 6B 
LY6H                  0.049   lymphocyte antigen 6 complex, locus H isoform b [Ho...
LY6H                  0.049   lymphocyte antigen 6 complex, locus H isoform a [Ho...
LY6H                  0.049   lymphocyte antigen 6 complex, locus H isoform b [Ho...
SLURP1                0.049   ARS component B precursor 
LOC390940             0.040   PREDICTED: similar to R28379_1 
LOC390940             0.040   PREDICTED: similar to R28379_1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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