Guide to the Human Genome
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Name: LY6E Sequence: fasta or formatted (131aa) NCBI GI: 4505049
Description:

lymphocyte antigen 6 complex, locus E

Referenced in:

Additional Genes in Development

Other entries for this name:
alt mRNA [131aa] lymphocyte antigen 6 complex, locus E
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         12           2
 C cysteine            7.6         10           2
 D aspartate           2.3          3           1
 E glutamate           1.5          2           1
 F phenylalanine       4.6          6           1
 G glycine             9.2         12           2
 H histidine           0.8          1           1
 I isoleucine          3.8          5           1
 K lysine              3.1          4           1
 L leucine            16.8         22           3
 M methionine          2.3          3           1
 N asparagine          4.6          6           1
 P proline             5.3          7           1
 Q glutamine           2.3          3           1
 R arginine            2.3          3           1
 S serine             12.2         16           2
 T threonine           3.8          5           1
 V valine              6.9          9           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   lymphocyte antigen 6 complex, locus E 
LY6E                  1.000   lymphocyte antigen 6 complex, locus E 
PSCA                  0.145   prostate stem cell antigen preproprotein 
LOC100292543          0.145   PREDICTED: similar to RIKEN cDNA D730001G18 
LOC100288207          0.145   PREDICTED: similar to RIKEN cDNA D730001G18 
LOC100288207          0.145   PREDICTED: hypothetical protein XP_002342921 
LY6H                  0.137   lymphocyte antigen 6 complex, locus H isoform b [Ho...
LY6H                  0.137   lymphocyte antigen 6 complex, locus H isoform a [Ho...
LY6H                  0.137   lymphocyte antigen 6 complex, locus H isoform b [Ho...
LY6D                  0.083   lymphocyte antigen 6 complex, locus D 
LYNX1                 0.083   Ly-6 neurotoxin-like protein 1 isoform c 
LYNX1                 0.083   Ly-6 neurotoxin-like protein 1 isoform c 
LYNX1                 0.083   Ly-6 neurotoxin-like protein 1 isoform c 
GPIHBP1               0.071   glycosylphosphatidylinositol anchored high density l...
SLURP1                0.071   ARS component B precursor 
LYPD2                 0.066   LY6/PLAUR domain containing 2 
LYNX1                 0.050   Ly-6 neurotoxin-like protein 1 isoform a 
LYNX1                 0.046   secreted Ly6/uPAR related protein 2 isoform b 
IGFBP1                0.029   insulin-like growth factor binding protein 1 precurso...
KRTAP5-8              0.025   keratin associated protein 5-8 
KRTAP5-4              0.025   keratin associated protein 5-4 
KRTAP5-3              0.021   keratin associated protein 5-3 
SPACA4                0.021   sperm acrosomal membrane protein 14 
LOC390940             0.012   PREDICTED: similar to R28379_1 
LOC390940             0.012   PREDICTED: similar to R28379_1 
LOC390940             0.012   PREDICTED: similar to R28379_1 
LY6G6D                0.012   lymphocyte antigen 6 complex G6D 
VWCE                  0.012   von Willebrand factor C and EGF domains 
LOC100293983          0.012   PREDICTED: similar to mucin, partial 
SSPO                  0.012   SCO-spondin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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