Guide to the Human Genome
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Name: LYPD2 Sequence: fasta or formatted (125aa) NCBI GI: 45387925
Description:

LY6/PLAUR domain containing 2

Referenced in:

Additional Genes in Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         11           2
 C cysteine            9.6         12           2
 D aspartate           4.0          5           1
 E glutamate           4.0          5           1
 F phenylalanine       0.8          1           1
 G glycine             6.4          8           1
 H histidine           0.8          1           1
 I isoleucine          2.4          3           1
 K lysine              3.2          4           1
 L leucine            15.2         19           2
 M methionine          1.6          2           1
 N asparagine          3.2          4           1
 P proline             6.4          8           1
 Q glutamine           1.6          2           1
 R arginine            4.0          5           1
 S serine              7.2          9           1
 T threonine          11.2         14           2
 V valine              7.2          9           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   LY6/PLAUR domain containing 2 
SLURP1                0.247   ARS component B precursor 
LOC100292543          0.132   PREDICTED: similar to RIKEN cDNA D730001G18 
LOC100288207          0.132   PREDICTED: similar to RIKEN cDNA D730001G18 
LOC100288207          0.132   PREDICTED: hypothetical protein XP_002342921 
LY6D                  0.132   lymphocyte antigen 6 complex, locus D 
PSCA                  0.128   prostate stem cell antigen preproprotein 
LYNX1                 0.098   secreted Ly6/uPAR related protein 2 isoform b 
LYNX1                 0.089   Ly-6 neurotoxin-like protein 1 isoform a 
LYNX1                 0.072   Ly-6 neurotoxin-like protein 1 isoform c 
LYNX1                 0.072   Ly-6 neurotoxin-like protein 1 isoform c 
LYNX1                 0.072   Ly-6 neurotoxin-like protein 1 isoform c 
LY6E                  0.068   lymphocyte antigen 6 complex, locus E 
LY6E                  0.068   lymphocyte antigen 6 complex, locus E 
LY6H                  0.064   lymphocyte antigen 6 complex, locus H isoform b [Ho...
LY6H                  0.064   lymphocyte antigen 6 complex, locus H isoform a [Ho...
LY6H                  0.064   lymphocyte antigen 6 complex, locus H isoform b [Ho...
LYPD1                 0.055   LY6/PLAUR domain containing 1 isoform a 
CD59                  0.051   CD59 antigen preproprotein 
CD59                  0.051   CD59 antigen preproprotein 
CD59                  0.051   CD59 antigen preproprotein 
CD59                  0.051   CD59 antigen preproprotein 
CD59                  0.051   CD59 antigen preproprotein 
CD59                  0.051   CD59 antigen preproprotein 
CD59                  0.051   CD59 antigen preproprotein 
CD59                  0.051   CD59 antigen preproprotein 
PATE4                 0.047   prostate and testis expressed 4 
GPIHBP1               0.043   glycosylphosphatidylinositol anchored high density l...
BMPR1A                0.034   bone morphogenetic protein receptor, type IA precurs...
ACVR1C                0.030   activin A receptor, type IC isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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