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Search of human proteins with 4504469
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4504469 homeobox B5 [Homo sapiens]
(269 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4504469 homeobox B5 [Homo sapiens] 544 e-155
gi|24497517 homeobox A5 [Homo sapiens] 316 1e-86
gi|11321638 homeobox C5 [Homo sapiens] 176 2e-44
gi|148613882 homeobox A4 [Homo sapiens] 152 2e-37
gi|24497538 homeobox C4 [Homo sapiens] 152 3e-37
gi|24497540 homeobox C4 [Homo sapiens] 152 3e-37
gi|13273315 homeobox B4 [Homo sapiens] 146 2e-35
gi|23503237 homeobox B6 [Homo sapiens] 144 6e-35
gi|23397672 homeobox D4 [Homo sapiens] 140 2e-33
gi|24497556 homeobox A7 [Homo sapiens] 133 1e-31
gi|13489077 homeobox A6 [Homo sapiens] 133 1e-31
gi|85068580 homeobox B7 [Homo sapiens] 129 2e-30
gi|24497544 homeobox C6 isoform 2 [Homo sapiens] 128 6e-30
gi|4758554 homeobox C6 isoform 1 [Homo sapiens] 128 6e-30
gi|24497513 homeobox A3 isoform a [Homo sapiens] 127 8e-30
gi|13562112 homeobox A3 isoform a [Homo sapiens] 127 8e-30
gi|13273317 homeobox B8 [Homo sapiens] 120 1e-27
gi|12056969 homeobox C8 [Homo sapiens] 114 1e-25
gi|15029506 homeobox D8 [Homo sapiens] 110 1e-24
gi|19923391 homeobox D3 [Homo sapiens] 107 1e-23
gi|182765442 homeobox A10 isoform a [Homo sapiens] 102 3e-22
gi|84570137 homeobox B3 [Homo sapiens] 102 4e-22
gi|24497515 homeobox A3 isoform b [Homo sapiens] 100 1e-21
gi|10140847 homeobox A2 [Homo sapiens] 96 4e-20
gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens] 95 7e-20
gi|194363768 homeobox D9 [Homo sapiens] 95 7e-20
gi|23510366 homeobox D10 [Homo sapiens] 94 1e-19
gi|169636435 caudal type homeobox 2 [Homo sapiens] 94 1e-19
gi|4504465 homeobox B2 [Homo sapiens] 92 5e-19
gi|121114296 caudal type homeobox 1 [Homo sapiens] 92 6e-19
>gi|4504469 homeobox B5 [Homo sapiens]
Length = 269
Score = 544 bits (1401), Expect = e-155
Identities = 269/269 (100%), Positives = 269/269 (100%)
Query: 1 MSSYFVNSFSGRYPNGPDYQLLNYGSGSSLSGSYRDPAAMHTGSYGYNYNGMDLSVNRSS 60
MSSYFVNSFSGRYPNGPDYQLLNYGSGSSLSGSYRDPAAMHTGSYGYNYNGMDLSVNRSS
Sbjct: 1 MSSYFVNSFSGRYPNGPDYQLLNYGSGSSLSGSYRDPAAMHTGSYGYNYNGMDLSVNRSS 60
Query: 61 ASSSHFGAVGESSRAFPAPAQEPRFRQAASSCSLSSPESLPCTNGDSHGAKPSASSPSDQ 120
ASSSHFGAVGESSRAFPAPAQEPRFRQAASSCSLSSPESLPCTNGDSHGAKPSASSPSDQ
Sbjct: 61 ASSSHFGAVGESSRAFPAPAQEPRFRQAASSCSLSSPESLPCTNGDSHGAKPSASSPSDQ 120
Query: 121 ATSASSSANFTEIDEASASSEPEEAASQLSSPSLARAQPEPMATSTAAPEGQTPQIFPWM 180
ATSASSSANFTEIDEASASSEPEEAASQLSSPSLARAQPEPMATSTAAPEGQTPQIFPWM
Sbjct: 121 ATSASSSANFTEIDEASASSEPEEAASQLSSPSLARAQPEPMATSTAAPEGQTPQIFPWM 180
Query: 181 RKLHISHDMTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKI 240
RKLHISHDMTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKI
Sbjct: 181 RKLHISHDMTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKI 240
Query: 241 WFQNRRMKWKKDNKLKSMSLATAGSAFQP 269
WFQNRRMKWKKDNKLKSMSLATAGSAFQP
Sbjct: 241 WFQNRRMKWKKDNKLKSMSLATAGSAFQP 269
>gi|24497517 homeobox A5 [Homo sapiens]
Length = 270
Score = 316 bits (810), Expect = 1e-86
Identities = 170/280 (60%), Positives = 200/280 (71%), Gaps = 21/280 (7%)
Query: 1 MSSYFVNSFSGRYPNGPDYQLLNYGSGSSLSGSYRDPAAMHTGSYGYNYNGMDLSVNRSS 60
MSSYFVNSF GRYPNGPDYQL NYG SS+S +RD A+MH+G YGY YNGMDLSV RS
Sbjct: 1 MSSYFVNSFCGRYPNGPDYQLHNYGDHSSVSEQFRDSASMHSGRYGYGYNGMDLSVGRSG 60
Query: 61 ASSSHFGAVGESSRAFPAPAQ----EPRFRQAASSCSLSSPESLPCT------NGDSHGA 110
S HFG+ GE +R++ A A EPR+ Q A+S P+ LPC+ DSH
Sbjct: 61 --SGHFGS-GERARSYAASASAAPAEPRYSQPATSTHSPQPDPLPCSAVAPSPGSDSHHG 117
Query: 111 KPSASSPSDQATSASSSANFTEIDEASASSEPEEAASQLSSPSLARAQPEPMATSTAAPE 170
++ S S A++ + S + + + +S EE A S + A+++P P AP
Sbjct: 118 GKNSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSP------APP 171
Query: 171 GQTPQIFPWMRKLHISHD-MTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAH 229
Q PQI+PWMRKLHISHD + GP+GKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAH
Sbjct: 172 AQ-PQIYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAH 230
Query: 230 ALCLSERQIKIWFQNRRMKWKKDNKLKSMSLATAGSAFQP 269
ALCLSERQIKIWFQNRRMKWKKDNKLKSMS+A AG AF+P
Sbjct: 231 ALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGGAFRP 270
>gi|11321638 homeobox C5 [Homo sapiens]
Length = 222
Score = 176 bits (445), Expect = 2e-44
Identities = 110/263 (41%), Positives = 140/263 (53%), Gaps = 51/263 (19%)
Query: 1 MSSYFVNSFSGRYPNGPDYQLL---NYGSGSSLSGSYRDPAAMHTGSYGYNYNGMDLSVN 57
MSSY NSF + PN P Y + NYGS S + S Y Y G+DLS+
Sbjct: 1 MSSYVANSFYKQSPNIPAYNMQTCGNYGSASEVQASR------------YCYGGLDLSIT 48
Query: 58 RSSASSSHFGAVGESSRAFPAPAQEPRFRQAASSCS-LSSPESLPCTNGDSHGAKPSA-- 114
FP PA + + + P+ C+ + G P
Sbjct: 49 ------------------FPPPAPSNSLHGVDMAANPRAHPDRPACSAAAAPGHAPGRDE 90
Query: 115 SSPSDQATSASSSANFTEIDEASASSEPEEAASQLSSPSLARAQPEPMATSTAAPEGQTP 174
++P + + +A + A +S E +E +Q P+ P P P
Sbjct: 91 AAPLNPGMYSQKAARPALEERAKSSGEIKEEQAQTGQPAGLSQPPAP------------P 138
Query: 175 QIFPWMRKLHISHDMTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLS 234
QI+PWM KLH+SH+ DGKR+RT+YTRYQTLELEKEFHFNRYLTRRRRIEIA+ LCL+
Sbjct: 139 QIYPWMTKLHMSHET---DGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLN 195
Query: 235 ERQIKIWFQNRRMKWKKDNKLKS 257
ERQIKIWFQNRRMKWKKD+K+KS
Sbjct: 196 ERQIKIWFQNRRMKWKKDSKMKS 218
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 152 bits (385), Expect = 2e-37
Identities = 102/292 (34%), Positives = 145/292 (49%), Gaps = 33/292 (11%)
Query: 1 MSSYFVNS--FSGRYPNGPDYQLLNYGSGSSLSG-----SYRDPAAMHTGSYGYNYNGMD 53
MSS+ +NS ++P +Y + GSG + G Y+ P A T +
Sbjct: 3 MSSFLINSNYIEPKFPPFEEYAQ-HSGSGGADGGPGGGPGYQQPPAPPTQHLPLQQPQLP 61
Query: 54 LSVNRSSASSSHFGAVGESSRAFPAPAQEPRFRQAASSCSLSSPESLPCTNGDSHGAKPS 113
+ ++S++ A+PA A P A + + P G S G P
Sbjct: 62 HAGGGREPTASYYAPRTAREPAYPAAALYP----AHGAADTAYPYGY--RGGASPGRPPQ 115
Query: 114 ASSPSDQATSASSSANFTEIDEASASSEPEEAASQLSSPSLARAQPE------------- 160
P QA + + + + + + A ++P A P
Sbjct: 116 PEQPPAQAKGPAHGLHASHVLQPQLPPPLQPRAVPPAAPRRCEAAPATPGVPAGGSAPAC 175
Query: 161 PMATSTAAP---EGQTPQIFPWMRKLHISH---DMTGPDGKRARTAYTRYQTLELEKEFH 214
P+ + +P +G+ P ++PWM+K+H+S G + KR+RTAYTR Q LELEKEFH
Sbjct: 176 PLLLADKSPLGLKGKEPVVYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFH 235
Query: 215 FNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSLATAGSA 266
FNRYLTRRRRIEIAH LCLSERQ+KIWFQNRRMKWKKD+KL + + ++ SA
Sbjct: 236 FNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSA 287
>gi|24497538 homeobox C4 [Homo sapiens]
Length = 264
Score = 152 bits (384), Expect = 3e-37
Identities = 94/216 (43%), Positives = 123/216 (56%), Gaps = 31/216 (14%)
Query: 62 SSSHFGAVGESS------RAFPAPAQEPRFRQAASSC-SLSSPESLPCTNGDSHGAKPSA 114
S ++G ES +P P P + + SC SL P G+S G P
Sbjct: 33 SPEYYGRTRESGFQHHHQELYPPPPPRPSYPERQYSCTSLQGP-------GNSRGHGP-- 83
Query: 115 SSPSDQATSASSSANFTEIDEASASSEPEEAASQLSSPSL-ARAQPEPMATSTAAPEGQT 173
A + + E ++ P AS SP+ A +QP P S+AA +
Sbjct: 84 ---------AQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQPAPDHPSSAA--SKQ 132
Query: 174 PQIFPWMRKLHISH---DMTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHA 230
P ++PWM+K+H+S + G + KR+RTAYTR Q LELEKEFH+NRYLTRRRRIEIAH+
Sbjct: 133 PIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHS 192
Query: 231 LCLSERQIKIWFQNRRMKWKKDNKLKSMSLATAGSA 266
LCLSERQIKIWFQNRRMKWKKD++L + + +A A
Sbjct: 193 LCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPA 228
>gi|24497540 homeobox C4 [Homo sapiens]
Length = 264
Score = 152 bits (384), Expect = 3e-37
Identities = 94/216 (43%), Positives = 123/216 (56%), Gaps = 31/216 (14%)
Query: 62 SSSHFGAVGESS------RAFPAPAQEPRFRQAASSC-SLSSPESLPCTNGDSHGAKPSA 114
S ++G ES +P P P + + SC SL P G+S G P
Sbjct: 33 SPEYYGRTRESGFQHHHQELYPPPPPRPSYPERQYSCTSLQGP-------GNSRGHGP-- 83
Query: 115 SSPSDQATSASSSANFTEIDEASASSEPEEAASQLSSPSL-ARAQPEPMATSTAAPEGQT 173
A + + E ++ P AS SP+ A +QP P S+AA +
Sbjct: 84 ---------AQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQPAPDHPSSAA--SKQ 132
Query: 174 PQIFPWMRKLHISH---DMTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHA 230
P ++PWM+K+H+S + G + KR+RTAYTR Q LELEKEFH+NRYLTRRRRIEIAH+
Sbjct: 133 PIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHS 192
Query: 231 LCLSERQIKIWFQNRRMKWKKDNKLKSMSLATAGSA 266
LCLSERQIKIWFQNRRMKWKKD++L + + +A A
Sbjct: 193 LCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPA 228
>gi|13273315 homeobox B4 [Homo sapiens]
Length = 251
Score = 146 bits (369), Expect = 2e-35
Identities = 71/120 (59%), Positives = 88/120 (73%), Gaps = 3/120 (2%)
Query: 150 SSPSLARAQPEPMATSTAAPEGQTPQIFPWMRKLHISH---DMTGPDGKRARTAYTRYQT 206
SSP P+ S + + P ++PWMRK+H+S + G + KR+RTAYTR Q
Sbjct: 115 SSPPPPPCAQNPLHPSPSHSACKEPVVYPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQV 174
Query: 207 LELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSLATAGSA 266
LELEKEFH+NRYLTRRRR+EIAHALCLSERQIKIWFQNRRMKWKKD+KL + + + G+A
Sbjct: 175 LELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKLPNTKIRSGGAA 234
>gi|23503237 homeobox B6 [Homo sapiens]
Length = 224
Score = 144 bits (364), Expect = 6e-35
Identities = 105/266 (39%), Positives = 132/266 (49%), Gaps = 54/266 (20%)
Query: 1 MSSYFVNS-FSGRYPNGPDYQLLNYGSGSSLSGSYRDPAAMHTGSYGYNYNGMDLSVNRS 59
MSSYFVNS F +G + L G S Y DP + YG G D S
Sbjct: 1 MSSYFVNSTFPVTLASGQESFL---GQLPLYSSGYADPLRHYPAPYGPG-PGQDKGFATS 56
Query: 60 SASSSHFGAVGESSRAFPAPAQEPRF-RQAASSCSLSSPESLPCTNGDSHGAKPSASSPS 118
S G G ++ PA P F R+ S+C+LS + P P P
Sbjct: 57 SYYPPAGGGYGRAAPCDYGPA--PAFYREKESACALSGADEQP----------PFHPEPR 104
Query: 119 DQATSASSSANFTEIDEASASSEPEEAASQLSSPSLARAQPEPMATSTAAPEGQTPQIFP 178
++ A + F E +E S TP ++P
Sbjct: 105 -KSDCAQDKSVFGETEEQKCS---------------------------------TP-VYP 129
Query: 179 WMRKLHISHDMT-GPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQ 237
WM++++ + + GP G+R R YTRYQTLELEKEFH+NRYLTRRRRIEIAHALCL+ERQ
Sbjct: 130 WMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQ 189
Query: 238 IKIWFQNRRMKWKKDNKLKSMSLATA 263
IKIWFQNRRMKWKK++KL S S +A
Sbjct: 190 IKIWFQNRRMKWKKESKLLSASQLSA 215
>gi|23397672 homeobox D4 [Homo sapiens]
Length = 255
Score = 140 bits (352), Expect = 2e-33
Identities = 68/115 (59%), Positives = 85/115 (73%), Gaps = 3/115 (2%)
Query: 155 ARAQPEPMATSTAAPEGQTPQIFPWMRKLHISH---DMTGPDGKRARTAYTRYQTLELEK 211
A +Q +P + Q ++PWM+K+H++ + TG + KR+RTAYTR Q LELEK
Sbjct: 112 AYSQSDPKQPPSGTALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLELEK 171
Query: 212 EFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSLATAGSA 266
EFHFNRYLTRRRRIEIAH LCLSERQIKIWFQNRRMKWKKD+KL + ++ S+
Sbjct: 172 EFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKGRSSSSS 226
>gi|24497556 homeobox A7 [Homo sapiens]
Length = 230
Score = 133 bits (335), Expect = 1e-31
Identities = 65/95 (68%), Positives = 73/95 (76%), Gaps = 7/95 (7%)
Query: 175 QIFPWMRKLHISHDMTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLS 234
+I+PWMR +GPD KR R YTRYQTLELEKEFHFNRYLTRRRRIEIAHALCL+
Sbjct: 118 RIYPWMRS-------SGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLT 170
Query: 235 ERQIKIWFQNRRMKWKKDNKLKSMSLATAGSAFQP 269
ERQIKIWFQNRRMKWKK++K + + A A P
Sbjct: 171 ERQIKIWFQNRRMKWKKEHKDEGPTAAAAPEGAVP 205
>gi|13489077 homeobox A6 [Homo sapiens]
Length = 233
Score = 133 bits (335), Expect = 1e-31
Identities = 101/260 (38%), Positives = 129/260 (49%), Gaps = 49/260 (18%)
Query: 1 MSSYFVN-SFSGRYPNGPDY---QLLNYGSGSSLSGSYRDPAAMHTGSYGYNYNGMDLSV 56
MSSYFVN +F G P+G D QL Y +G D SYG
Sbjct: 1 MSSYFVNPTFPGSLPSGQDSFLGQLPLYQAGY-------DALRPFPASYG---------- 43
Query: 57 NRSSASSSHFGAVGESSRAFPAPAQEPRFRQAASSCSLSSPESLPCTNGDSHGAKPSASS 116
ASS + + + P Q+ A + S S ++ D GA PS S
Sbjct: 44 ----ASS-----LPDKTYTSPCFYQQSNSVLACNRASYEYGASCFYSDKDLSGASPSGSG 94
Query: 117 PSDQATSASSSANFTEIDEASASSEPEEAASQLSSPSLARAQPEPMATSTAAPEGQTPQI 176
+ +F+ PE+ SS +A + A T +
Sbjct: 95 ---KQRGPGDYLHFS----------PEQQYKPDSSSGQGKALHDE-----GADRKYTSPV 136
Query: 177 FPWMRKLH-ISHDMTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSE 235
+PWM++++ + + G G+R R YTRYQTLELEKEFHFNRYLTRRRRIEIA+ALCL+E
Sbjct: 137 YPWMQRMNSCAGAVYGSHGRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTE 196
Query: 236 RQIKIWFQNRRMKWKKDNKL 255
RQIKIWFQNRRMKWKK+NKL
Sbjct: 197 RQIKIWFQNRRMKWKKENKL 216
>gi|85068580 homeobox B7 [Homo sapiens]
Length = 217
Score = 129 bits (325), Expect = 2e-30
Identities = 88/208 (42%), Positives = 108/208 (51%), Gaps = 40/208 (19%)
Query: 61 ASSSHF--GAVGE-SSRAFPAPAQEPRFRQAASSCSLSSPESLPCTNGDSHGAKPSASSP 117
ASSS F GA E +S AF + Q P + + + +S + L G G +
Sbjct: 16 ASSSVFATGAFPEQTSCAFASNPQRPGYGAGSGASFAASMQGLYPGGGGMAGQSAAGVYA 75
Query: 118 SDQATSASS--------SANFTEI---DEASASSEPEEAASQLSSPSLARAQPEPMATST 166
+ SS N + + D A A+ E+ S L++ S R
Sbjct: 76 AGYGLEPSSFNMHCAPFEQNLSGVCPGDSAKAAGAKEQRDSDLAAESNFR---------- 125
Query: 167 AAPEGQTPQIFPWMRKLHISHDMTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIE 226
I+PWMR +G D KR R YTRYQTLELEKEFH+NRYLTRRRRIE
Sbjct: 126 ---------IYPWMRS-------SGTDRKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIE 169
Query: 227 IAHALCLSERQIKIWFQNRRMKWKKDNK 254
IAH LCL+ERQIKIWFQNRRMKWKK+NK
Sbjct: 170 IAHTLCLTERQIKIWFQNRRMKWKKENK 197
>gi|24497544 homeobox C6 isoform 2 [Homo sapiens]
Length = 153
Score = 128 bits (321), Expect = 6e-30
Identities = 66/103 (64%), Positives = 78/103 (75%), Gaps = 5/103 (4%)
Query: 168 APEGQTP--QIFPWMRKLHISHDMTG--PDGKRARTAYTRYQTLELEKEFHFNRYLTRRR 223
AP+ Q QI+PWM++++ SH G D +R R Y+RYQTLELEKEFHFNRYLTRRR
Sbjct: 30 APQDQKASIQIYPWMQRMN-SHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRR 88
Query: 224 RIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSLATAGSA 266
RIEIA+ALCL+ERQIKIWFQNRRMKWKK++ L S G A
Sbjct: 89 RIEIANALCLTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGA 131
>gi|4758554 homeobox C6 isoform 1 [Homo sapiens]
Length = 235
Score = 128 bits (321), Expect = 6e-30
Identities = 66/103 (64%), Positives = 78/103 (75%), Gaps = 5/103 (4%)
Query: 168 APEGQTP--QIFPWMRKLHISHDMTG--PDGKRARTAYTRYQTLELEKEFHFNRYLTRRR 223
AP+ Q QI+PWM++++ SH G D +R R Y+RYQTLELEKEFHFNRYLTRRR
Sbjct: 112 APQDQKASIQIYPWMQRMN-SHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRR 170
Query: 224 RIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSLATAGSA 266
RIEIA+ALCL+ERQIKIWFQNRRMKWKK++ L S G A
Sbjct: 171 RIEIANALCLTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGA 213
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 127 bits (320), Expect = 8e-30
Identities = 99/266 (37%), Positives = 140/266 (52%), Gaps = 39/266 (14%)
Query: 33 SYRDPAAMHTGSYGYNY-NGMDLSVNRSS-ASSSHFGAVGESSR---AFPAPAQ---EPR 84
+Y D +A++ G Y Y NG + N+ +S+ GA GE R + +P+ P+
Sbjct: 5 TYYDSSAIY-GGYPYQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGGHPK 63
Query: 85 FRQAASSC--SLSSPESLPCTNGDS--HGAKPSASSPSDQATSASSS--ANFTEIDEASA 138
+ + +C +LS+P S P + G+ H P A+ P+ Q + A +
Sbjct: 64 AHELSEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPS 123
Query: 139 SSEPEEAASQLSSPSLARAQPEPMATSTAAPEGQTPQIFPWMR------KLHISHDMTG- 191
S+ P + AS ++P+ A A P+ S + QIFPWM+ K S +G
Sbjct: 124 SASPPQNAS--NNPTPANAAKSPLLNSPTVAK----QIFPWMKESRQNTKQKTSSSSSGE 177
Query: 192 -------PDG----KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKI 240
P G KRARTAYT Q +ELEKEFHFNRYL R RR+E+A+ L L+ERQIKI
Sbjct: 178 SCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKI 237
Query: 241 WFQNRRMKWKKDNKLKSMSLATAGSA 266
WFQNRRMK+KKD K K M ++ G +
Sbjct: 238 WFQNRRMKYKKDQKGKGMLTSSGGQS 263
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 127 bits (320), Expect = 8e-30
Identities = 99/266 (37%), Positives = 140/266 (52%), Gaps = 39/266 (14%)
Query: 33 SYRDPAAMHTGSYGYNY-NGMDLSVNRSS-ASSSHFGAVGESSR---AFPAPAQ---EPR 84
+Y D +A++ G Y Y NG + N+ +S+ GA GE R + +P+ P+
Sbjct: 5 TYYDSSAIY-GGYPYQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGGHPK 63
Query: 85 FRQAASSC--SLSSPESLPCTNGDS--HGAKPSASSPSDQATSASSS--ANFTEIDEASA 138
+ + +C +LS+P S P + G+ H P A+ P+ Q + A +
Sbjct: 64 AHELSEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPS 123
Query: 139 SSEPEEAASQLSSPSLARAQPEPMATSTAAPEGQTPQIFPWMR------KLHISHDMTG- 191
S+ P + AS ++P+ A A P+ S + QIFPWM+ K S +G
Sbjct: 124 SASPPQNAS--NNPTPANAAKSPLLNSPTVAK----QIFPWMKESRQNTKQKTSSSSSGE 177
Query: 192 -------PDG----KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKI 240
P G KRARTAYT Q +ELEKEFHFNRYL R RR+E+A+ L L+ERQIKI
Sbjct: 178 SCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKI 237
Query: 241 WFQNRRMKWKKDNKLKSMSLATAGSA 266
WFQNRRMK+KKD K K M ++ G +
Sbjct: 238 WFQNRRMKYKKDQKGKGMLTSSGGQS 263
>gi|13273317 homeobox B8 [Homo sapiens]
Length = 243
Score = 120 bits (302), Expect = 1e-27
Identities = 90/259 (34%), Positives = 113/259 (43%), Gaps = 60/259 (23%)
Query: 1 MSSYFVNSFSGRYPNGPDYQLLNYGSGSSLSGSYRDPAAMHTGSYGYNYNGMDLSVNRSS 60
MSSYFVNS +Y G + Y G + +D T YG + G
Sbjct: 1 MSSYFVNSLFSKYKTGESLRPNYYDCGFA-----QDLGGRPTVVYGPSSGG--------- 46
Query: 61 ASSSHFGAVGESSRAFPAPAQEPRFRQAASSCSLSSPESLPCT------NGDSHGAKPSA 114
+F P+Q F SS S + + PC G+ +G P
Sbjct: 47 --------------SFQHPSQIQEFYHGPSSLSTAPYQQNPCAVACHGDPGNFYGYDP-L 91
Query: 115 SSPSDQATSASSSANFTEIDEASASSEPEEAASQLSSPSLARAQPEPMATSTAAPEGQTP 174
S + + A+AS EEA SPS
Sbjct: 92 QRQSLFGAQDPDLVQYADCKLAAASGLGEEAEGSEQSPS-------------------PT 132
Query: 175 QIFPWMRKLHISHDMTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLS 234
Q+FPWMR +R R Y+RYQTLELEKEF FN YLTR+RRIE++HAL L+
Sbjct: 133 QLFPWMRP------QAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLT 186
Query: 235 ERQIKIWFQNRRMKWKKDN 253
ERQ+KIWFQNRRMKWKK+N
Sbjct: 187 ERQVKIWFQNRRMKWKKEN 205
>gi|12056969 homeobox C8 [Homo sapiens]
Length = 242
Score = 114 bits (284), Expect = 1e-25
Identities = 92/263 (34%), Positives = 119/263 (45%), Gaps = 65/263 (24%)
Query: 1 MSSYFVNSFSGRYPNGPDYQLLNYGSGSSLSGSYRDPAAMHTGSYGYNYNGMDLSVNRSS 60
MSSYFVN +Y +G SL +Y D SV RS
Sbjct: 1 MSSYFVNPLFSKYK-----------AGESLEPAYYDCR-------------FPQSVGRSH 36
Query: 61 ASSSHFGAVGESSRAFPAPAQEPR--FRQAASSCSLSSPESLPCT---NGDSHGAKPSAS 115
A +G G S+ F + + F S S S + PC+ +GD+ +
Sbjct: 37 ALV--YGP-GGSAPGFQHASHHVQDFFHHGTSGISNSGYQQNPCSLSCHGDASKFYGYEA 93
Query: 116 SPSDQATSASSSANFTEIDEASAS-----SEPEEAASQLSSPSLARAQPEPMATSTAAPE 170
P A A+ + + +S SE + +Q SSPSL
Sbjct: 94 LPRQSLYGAQQEASVVQYPDCKSSANTNSSEGQGHLNQNSSPSL---------------- 137
Query: 171 GQTPQIFPWMRKLHISHDMTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHA 230
+FPWMR P + R Y+RYQTLELEKEF FN YLTR+RRIE++HA
Sbjct: 138 -----MFPWMRP-------HAPGRRSGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHA 185
Query: 231 LCLSERQIKIWFQNRRMKWKKDN 253
L L+ERQ+KIWFQNRRMKWKK+N
Sbjct: 186 LGLTERQVKIWFQNRRMKWKKEN 208
>gi|15029506 homeobox D8 [Homo sapiens]
Length = 290
Score = 110 bits (275), Expect = 1e-24
Identities = 51/79 (64%), Positives = 61/79 (77%), Gaps = 6/79 (7%)
Query: 175 QIFPWMRKLHISHDMTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLS 234
Q+FPWMR P +R R Y+R+QTLELEKEF FN YLTR+RRIE++HAL L+
Sbjct: 184 QMFPWMRP------QAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALT 237
Query: 235 ERQIKIWFQNRRMKWKKDN 253
ERQ+KIWFQNRRMKWKK+N
Sbjct: 238 ERQVKIWFQNRRMKWKKEN 256
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 107 bits (267), Expect = 1e-23
Identities = 75/208 (36%), Positives = 102/208 (49%), Gaps = 28/208 (13%)
Query: 77 PAPAQEPRFRQAASSCSL--SSPESLPCTNG-DSHGAKPSASSPSDQATSASSSANFTEI 133
PA A S+CS+ S+P P G + +G+ + + Q S
Sbjct: 53 PAAASSLDTDYPGSACSIQSSAPLRAPAHKGAELNGSCMRPGTGNSQGGGGGSQPPGLNS 112
Query: 134 DEASASSEPEEAASQLSSPS-------LARAQPEPMATSTAAPEGQTPQIFPWMRKLHIS 186
++ P SSP+ + + P A+S++A + QIFPWM++ +
Sbjct: 113 EQQPPQPPPPPPTLPPSSPTNPGGGVPAKKPKGGPNASSSSATISK--QIFPWMKESRQN 170
Query: 187 HDMT----------------GPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHA 230
GP KR RTAYT Q +ELEKEFHFNRYL R RR+E+A+
Sbjct: 171 SKQKNSCATAGESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANL 230
Query: 231 LCLSERQIKIWFQNRRMKWKKDNKLKSM 258
L L+ERQIKIWFQNRRMK+KKD K K +
Sbjct: 231 LNLTERQIKIWFQNRRMKYKKDQKAKGI 258
>gi|182765442 homeobox A10 isoform a [Homo sapiens]
Length = 410
Score = 102 bits (255), Expect = 3e-22
Identities = 85/257 (33%), Positives = 118/257 (45%), Gaps = 40/257 (15%)
Query: 13 YPNGP--DYQLLNYGSGSSLSGSYRDPAAMHTGSYGYNYNGMDLSVNRSSASSSHFGAVG 70
+P GP D L SG + G +R A T GY G + GA
Sbjct: 191 FPRGPPPDGCALGTSSGVPVPGYFRLSQAYGTAK-GYGSGG---------GGAQQLGAG- 239
Query: 71 ESSRAFPAPAQEPRFRQAASSCSLSSPESLPCTNGDSHGAKPSASSPSDQATSASSSANF 130
P PAQ P P +L + D+ + + SP + S
Sbjct: 240 ------PFPAQPP-------GRGFDLPPALASGSADAARKERALDSPPPPTLACGSGGGS 286
Query: 131 TEIDEASASSEPEEAASQLSSPSLARAQPEPMATSTAAPEGQTPQIFPWMRKLHISHDMT 190
+EA ASS AA +LS P P +S A+PE + + + ++ +T
Sbjct: 287 QGDEEAHASSS---AAEELS--------PAPSESSKASPEKDS---LGNSKGENAANWLT 332
Query: 191 GPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWK 250
G++ R YT++QTLELEKEF FN YLTR RR+EI+ ++ L++RQ+KIWFQNRRMK K
Sbjct: 333 AKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLK 392
Query: 251 KDNKLKSMSLATAGSAF 267
K N+ + TA F
Sbjct: 393 KMNRENRIRELTANFNF 409
Score = 29.6 bits (65), Expect = 2.9
Identities = 28/118 (23%), Positives = 42/118 (35%), Gaps = 8/118 (6%)
Query: 59 SSASSSHFGAVGESSRAFPAPAQEPRFRQAASSCSLSSPESLPCTNGDSHGAKPSASSPS 118
S S G +G + + P+ + A SC + P+ P P P+
Sbjct: 93 SPGSGGGGGGLGPGAHGY-GPSPIDLWLDAPRSCRMEPPDGPPPPPQQQPPPPPQPPQPA 151
Query: 119 DQATSASSSANFTEIDE----ASASSEPEEAASQLSSPSLARAQPE---PMATSTAAP 169
QATS S + N E SA P+ +A+ R P + TS+ P
Sbjct: 152 PQATSCSFAQNIKEESSYCLYDSADKCPKVSATAAELAPFPRGPPPDGCALGTSSGVP 209
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 102 bits (254), Expect = 4e-22
Identities = 49/70 (70%), Positives = 58/70 (82%)
Query: 195 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNK 254
KRARTAYT Q +ELEKEFHFNRYL R RR+E+A+ L LSERQIKIWFQNRRMK+KKD K
Sbjct: 189 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQK 248
Query: 255 LKSMSLATAG 264
K ++ ++ G
Sbjct: 249 AKGLASSSGG 258
>gi|24497515 homeobox A3 isoform b [Homo sapiens]
Length = 285
Score = 100 bits (250), Expect = 1e-21
Identities = 49/72 (68%), Positives = 58/72 (80%)
Query: 195 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNK 254
KRARTAYT Q +ELEKEFHFNRYL R RR+E+A+ L L+ERQIKIWFQNRRMK+KKD K
Sbjct: 34 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 93
Query: 255 LKSMSLATAGSA 266
K M ++ G +
Sbjct: 94 GKGMLTSSGGQS 105
>gi|10140847 homeobox A2 [Homo sapiens]
Length = 376
Score = 95.5 bits (236), Expect = 4e-20
Identities = 62/160 (38%), Positives = 80/160 (50%), Gaps = 9/160 (5%)
Query: 98 ESLPCTNGDSHGAKPSASSPSDQATSASSSANFTEIDEASASSEPEEA-ASQLSSPSLAR 156
+++P N SH + P + S A A PE + +
Sbjct: 54 QTIPSLNPGSHPRHGAGGRPKPSPAGSRGSPV-----PAGALQPPEYPWMKEKKAAKKTA 108
Query: 157 AQPEPMATSTAAPEGQTPQIFPWMRKLHISHDMTGPDGKRARTAYTRYQTLELEKEFHFN 216
P A +TAA G P L I+ D +G +R RTAYT Q LELEKEFHFN
Sbjct: 109 LLPAAAAAATAAATG--PACLSHKESLEIA-DGSGGGSRRLRTAYTNTQLLELEKEFHFN 165
Query: 217 RYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLK 256
+YL R RR+EIA L L+ERQ+K+WFQNRRMK K+ + K
Sbjct: 166 KYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCK 205
>gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]
Length = 283
Score = 94.7 bits (234), Expect = 7e-20
Identities = 53/108 (49%), Positives = 65/108 (60%), Gaps = 20/108 (18%)
Query: 169 PEGQTPQI----------FPWMR--KLHI--------SHDMTGPDGKRARTAYTRYQTLE 208
PEG P + FPWM+ K H ++ + KR RTAYTR Q LE
Sbjct: 101 PEGAEPGVLEEPNRVQLPFPWMKSTKAHAWKGQWAGGAYAAEPEENKRTRTAYTRAQLLE 160
Query: 209 LEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLK 256
LEKEF FN+Y++R RR+E+A L L+ER IKIWFQNRRMKWKK+ K
Sbjct: 161 LEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEEDKK 208
>gi|194363768 homeobox D9 [Homo sapiens]
Length = 352
Score = 94.7 bits (234), Expect = 7e-20
Identities = 74/205 (36%), Positives = 103/205 (50%), Gaps = 19/205 (9%)
Query: 61 ASSSHFGAVGESSRAFPAPAQEPRFRQAASSCSLSSPESLPCT----NGDSHGAKPSASS 116
A+ H+G E+ RA PAPA ++S+ SS + C+ + S G + S +S
Sbjct: 153 ANGRHYGIKPET-RAAPAPATAASTTSSSSTSLSSSSKRTECSVARESQGSSGPEFSCNS 211
Query: 117 PSDQATSASSS-----ANFTEIDEASASSEPEEAASQLSSPSLARAQPEPMATSTAAPEG 171
+ +A++ A SSEP A S P + + E + +
Sbjct: 212 FLQEKAAAATGGTGPGAGIGAATGTGGSSEPS-ACSDHPIPGCSLKEEEKQHS-----QP 265
Query: 172 QTPQIFPWMRKLHISHDMTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHAL 231
Q Q+ P + H + ++ R YT+YQTLELEKEF FN YLTR RR E+A L
Sbjct: 266 QQQQLDPNNPAANWIHARST---RKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARIL 322
Query: 232 CLSERQIKIWFQNRRMKWKKDNKLK 256
L+ERQ+KIWFQNRRMK KK +K K
Sbjct: 323 NLTERQVKIWFQNRRMKMKKMSKEK 347
>gi|23510366 homeobox D10 [Homo sapiens]
Length = 340
Score = 94.4 bits (233), Expect = 1e-19
Identities = 56/141 (39%), Positives = 84/141 (59%), Gaps = 6/141 (4%)
Query: 132 EIDEASASSEPEEAASQLSSPSLARAQPEPMA----TSTAAPEGQTPQIFPWMRK-LHIS 186
+++E + EP + SQ+ SP PE + S ++PE Q + ++ S
Sbjct: 200 KMNEPVSGQEPTKV-SQVESPEAKGGLPEERSCLAEVSVSSPEVQEKESKEEIKSDTPTS 258
Query: 187 HDMTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRR 246
+ +T G++ R YT++QTLELEKEF FN YLTR RR+EI+ ++ L++RQ+KIWFQNRR
Sbjct: 259 NWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRR 318
Query: 247 MKWKKDNKLKSMSLATAGSAF 267
MK KK ++ + TA F
Sbjct: 319 MKLKKMSRENRIRELTANLTF 339
>gi|169636435 caudal type homeobox 2 [Homo sapiens]
Length = 313
Score = 94.0 bits (232), Expect = 1e-19
Identities = 77/242 (31%), Positives = 112/242 (46%), Gaps = 37/242 (15%)
Query: 52 MDLSVNRSSASSSHFGAVGESSRAFPAPAQEPRF------RQAASSCSLSSPES----LP 101
+D V+ +S H G + + + F +P Q P + AA++ +L S +S P
Sbjct: 7 LDKDVSMYPSSVRHSGGLNLAPQNFVSPPQYPDYGGYHVAAAAAAAANLDSAQSPGPSWP 66
Query: 102 CTNG-----DSHGAKPSASSPSDQATSA-------------SSSANFTEIDEASASSEPE 143
G D +G P ++ + A + SS A++
Sbjct: 67 AAYGAPLREDWNGYAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADYHPHHHPHHHPHHP 126
Query: 144 EAASQLSS---PSLARAQPEPMATSTA---APEGQTPQIFPWMRK---LHISHDMTGPDG 194
AA +S +L P P AT+ A +P GQ + WMRK + +
Sbjct: 127 AAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPAQQSLGSQVKTRTK 186
Query: 195 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNK 254
+ R YT +Q LELEKEFH++RY+T RR+ E+A L LSERQ+KIWFQNRR K +K NK
Sbjct: 187 DKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERKINK 246
Query: 255 LK 256
K
Sbjct: 247 KK 248
>gi|4504465 homeobox B2 [Homo sapiens]
Length = 356
Score = 92.0 bits (227), Expect = 5e-19
Identities = 59/150 (39%), Positives = 72/150 (48%), Gaps = 37/150 (24%)
Query: 136 ASASSEPEEAASQLSSPSLARAQPEPMATSTAAPEGQTPQIFPWMRKLHI----SHDMTG 191
AS P P+L P P+ + APE FPWM++ S T
Sbjct: 60 ASTLQRPRSQKRAEDGPALPPPPPPPLPAAPPAPE------FPWMKEKKSAKKPSQSATS 113
Query: 192 P----------------DG-----------KRARTAYTRYQTLELEKEFHFNRYLTRRRR 224
P DG +R RTAYT Q LELEKEFHFN+YL R RR
Sbjct: 114 PSPAASAVPASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRR 173
Query: 225 IEIAHALCLSERQIKIWFQNRRMKWKKDNK 254
+EIA L L+ERQ+K+WFQNRRMK K+ +
Sbjct: 174 VEIAALLDLTERQVKVWFQNRRMKHKRQTQ 203
>gi|121114296 caudal type homeobox 1 [Homo sapiens]
Length = 265
Score = 91.7 bits (226), Expect = 6e-19
Identities = 71/189 (37%), Positives = 94/189 (49%), Gaps = 18/189 (9%)
Query: 77 PAPAQEPRFRQAASSCSLSSPESLPCTNGDSHGAKPSASSPSDQATSASSSANFTEIDEA 136
PAP Q P F SS S P P T + GA P + D A + A
Sbjct: 37 PAPPQYPDF----SSYSHVEPAPAPPT---AWGA-PFPAPKDDWAAAYGPGPAAPAASPA 88
Query: 137 SASSEPEEAASQLSSPSLAR----AQPEPMATSTAAPEGQTPQIFPWMRKLHISHDMTGP 192
S + P S + +P AQP + ++P Q P + WMR+ ++ G
Sbjct: 89 SLAFGPPPDFSPVPAPPGPGPGLLAQPLGGPGTPSSPGAQRPTPYEWMRR-SVAAGGGGG 147
Query: 193 DGK-----RARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRM 247
GK + R YT +Q LELEKEFH++RY+T RR+ E+A L L+ERQ+KIWFQNRR
Sbjct: 148 SGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRA 207
Query: 248 KWKKDNKLK 256
K +K NK K
Sbjct: 208 KERKVNKKK 216
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.123 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,142,213
Number of Sequences: 37866
Number of extensions: 531512
Number of successful extensions: 4906
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 359
Number of HSP's that attempted gapping in prelim test: 3573
Number of HSP's gapped (non-prelim): 1450
length of query: 269
length of database: 18,247,518
effective HSP length: 101
effective length of query: 168
effective length of database: 14,423,052
effective search space: 2423072736
effective search space used: 2423072736
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.