Search of human proteins with 4504447

Search of human proteins with 4504447

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1
isoform A2 [Homo sapiens]
         (341 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform...   729   0.0  
gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isofor...   725   0.0  
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap...   486   e-137
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b...   471   e-133
gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ...   419   e-117
gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Hom...   412   e-115
gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Hom...   412   e-115
gi|89035135 PREDICTED: similar to heterogeneous nuclear ribonucl...   364   e-101
gi|89034333 PREDICTED: similar to heterogeneous nuclear ribonucl...   364   e-101
gi|169203146 PREDICTED: similar to heterogeneous nuclear ribonuc...   363   e-100
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi...   306   2e-83
gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform ...   203   2e-52
gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo...   196   2e-50
gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b ...   196   2e-50
gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a ...   195   4e-50
gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform ...   179   4e-45
gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d ...   172   4e-43
gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c ...   171   9e-43
gi|20373175 musashi 2 isoform a [Homo sapiens]                        165   5e-41
gi|4505255 musashi 1 [Homo sapiens]                                   162   4e-40
gi|25121993 musashi 2 isoform b [Homo sapiens]                        158   6e-39
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]         154   1e-37
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]         154   1e-37
gi|239747524 PREDICTED: similar to serum response factor-related...   126   3e-29
gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]          114   1e-25
gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]         114   1e-25
gi|6678271 TAR DNA binding protein [Homo sapiens]                     109   4e-24
gi|55956899 keratin 9 [Homo sapiens]                                  107   2e-23
gi|55956788 nucleolin [Homo sapiens]                                  101   8e-22
gi|109452587 family with sequence similarity 98, member B isofor...   100   2e-21

>gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform A2
           [Homo sapiens]
          Length = 341

 Score =  729 bits (1881), Expect = 0.0
 Identities = 341/341 (100%), Positives = 341/341 (100%)

Query: 1   MEREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSM 60
           MEREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSM
Sbjct: 1   MEREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSM 60

Query: 61  AEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF 120
           AEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF
Sbjct: 61  AEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF 120

Query: 121 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQE 180
           EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQE
Sbjct: 121 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQE 180

Query: 181 MQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPG 240
           MQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPG
Sbjct: 181 MQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPG 240

Query: 241 GGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSN 300
           GGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSN
Sbjct: 241 GGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSN 300

Query: 301 YGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRSRY 341
           YGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRSRY
Sbjct: 301 YGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRSRY 341


>gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isoform
           B1 [Homo sapiens]
          Length = 353

 Score =  725 bits (1872), Expect = 0.0
 Identities = 339/340 (99%), Positives = 340/340 (100%)

Query: 2   EREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMA 61
           +REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMA
Sbjct: 14  KREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMA 73

Query: 62  EVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFE 121
           EVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFE
Sbjct: 74  EVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFE 133

Query: 122 EYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEM 181
           EYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEM
Sbjct: 134 EYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEM 193

Query: 182 QEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGG 241
           QEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGG
Sbjct: 194 QEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGG 253

Query: 242 GNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNY 301
           GNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNY
Sbjct: 254 GNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNY 313

Query: 302 GPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRSRY 341
           GPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRSRY
Sbjct: 314 GPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRSRY 353


>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
           sapiens]
          Length = 378

 Score =  486 bits (1250), Expect = e-137
 Identities = 253/360 (70%), Positives = 282/360 (78%), Gaps = 36/360 (10%)

Query: 3   REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 62
           +E EQ RKLFIGGLSFETT++SLR ++E+WG LTDCVVMRDP +KRSRGFGFVT+S + E
Sbjct: 29  KEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEE 88

Query: 63  VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 122
           VDAAM ARPH +DGRVVEPKRAV+RE+S KPGAH+TVKK+FVGGIKEDTEE++LRDYFE+
Sbjct: 89  VDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEK 148

Query: 123 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 182
           YGKI+TIE++ DRQSGKKRGF FVTFDDHD VDKIV+QKYHTINGHN EV+KALS+QEMQ
Sbjct: 149 YGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQ 208

Query: 183 EVQSSRS---------GRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGR----GFG 229
              S R          GRGGNFG     GGGGNFG G     RGG  G G G     G G
Sbjct: 209 SAGSQRGRGGGSGNFMGRGGNFG-----GGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGG 263

Query: 230 D-GYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGY--GGGYD------NYGG 280
           D GYNG+GG   GGN+GG PGY   RGGYGGGGPGYGNQGGGY  GGGYD      N+GG
Sbjct: 264 DGGYNGFGG--DGGNYGGGPGY-SSRGGYGGGGPGYGNQGGGYGGGGGYDGYNEGGNFGG 320

Query: 281 GNY-GSGNYNDFGNYN-QQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGR 338
           GNY G GNYNDFGNY+ QQ SNYGPMK G+FGG R+ G PYGGG YG G  GGSGGYG R
Sbjct: 321 GNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGG-RSSGSPYGGG-YGSG--GGSGGYGSR 376



 Score = 70.5 bits (171), Expect = 2e-12
 Identities = 36/111 (32%), Positives = 63/111 (56%), Gaps = 4/111 (3%)

Query: 70  RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 129
           RP    GR    +R    EE   P     ++KLF+GG+  +T +  LR++FE++G +   
Sbjct: 9   RPQPDSGR----RRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDC 64

Query: 130 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQE 180
            ++ D Q+ + RGFGFVT+   + VD  +  + H ++G   E ++A+SR++
Sbjct: 65  VVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSRED 115


>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
           [Homo sapiens]
          Length = 372

 Score =  471 bits (1211), Expect = e-133
 Identities = 237/358 (66%), Positives = 266/358 (74%), Gaps = 25/358 (6%)

Query: 3   REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 62
           +E EQ RKLFIGGLSFETT+ESLR+++EQWG LTDCVVMRDP +KRSRGFGFVT++++ E
Sbjct: 8   KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67

Query: 63  VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 122
           VDAAM ARPH +DGRVVEPKRAV+RE+S +PGAH+TVKK+FVGGIKEDTEEHHLRDYFE+
Sbjct: 68  VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 127

Query: 123 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 182
           YGKI+ IEI+TDR SGKKRGF FVTFDDHD VDKIV+QKYHT+NGHN EVRKALS+QEM 
Sbjct: 128 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMA 187

Query: 183 EVQSSRSGRGGNFGFGDSRGG--GGNFGPGPGSNFR-----GGSDGYGSGRGFGDGYNGY 235
              SS+ GR G+  FG  RGG  GGN   G G NF      GGS G G   G GDGYNG+
Sbjct: 188 SASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGF 247

Query: 236 GGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGG-----GYDNYGGGNY------- 283
           G    GG  GG PGY GG  GYG GG GYGNQG GYGG      Y+N GGG +       
Sbjct: 248 GN--DGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSN 305

Query: 284 --GSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRS 339
             G G+YNDFGNYN Q SN+GPMK GNFGG     GPYGGG          GGYGG S
Sbjct: 306 FGGGGSYNDFGNYNNQSSNFGPMKGGNFGG--RSSGPYGGGGQYFAKPRNQGGYGGSS 361



 Score = 66.2 bits (160), Expect = 4e-11
 Identities = 30/94 (31%), Positives = 56/94 (59%)

Query: 89  ESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 148
           +S  P     ++KLF+GG+  +T +  LR +FE++G +    ++ D  + + RGFGFVT+
Sbjct: 3   KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62

Query: 149 DDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 182
              + VD  +  + H ++G   E ++A+SR++ Q
Sbjct: 63  ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQ 96



 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 38/88 (43%), Positives = 43/88 (48%), Gaps = 24/88 (27%)

Query: 260 GGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPY 319
           G  G GN GGG GGG+   G  N+G G     GN++ +         G FGGSR  GG Y
Sbjct: 195 GRSGSGNFGGGRGGGFG--GNDNFGRG-----GNFSGR---------GGFGGSRG-GGGY 237

Query: 320 GGGNYG------PGGSGGSG-GYGGRSR 340
           GG   G       GG GG G GY G SR
Sbjct: 238 GGSGDGYNGFGNDGGYGGGGPGYSGGSR 265


>gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
           [Homo sapiens]
          Length = 320

 Score =  419 bits (1078), Expect = e-117
 Identities = 216/347 (62%), Positives = 247/347 (71%), Gaps = 46/347 (13%)

Query: 3   REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 62
           +E EQ RKLFIGGLSFETT+ESLR+++EQWG LTDCVVMRDP +KRSRGFGFVT++++ E
Sbjct: 8   KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67

Query: 63  VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 122
           VDAAM ARPH +DGRVVEPKRAV+RE+S +PGAH+TVKK+FVGGIKEDTEEHHLRDYFE+
Sbjct: 68  VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 127

Query: 123 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 182
           YGKI+ IEI+TDR SGKKRGF FVTFDDHD VDKIV+QKYHT+NGHN EVRKALS+QEM 
Sbjct: 128 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMA 187

Query: 183 EVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGG 242
              SS+ GR G+  FG  RGGG            GG+D +G G  F           G G
Sbjct: 188 SASSSQRGRSGSGNFGGGRGGGF-----------GGNDNFGRGGNFS----------GRG 226

Query: 243 NFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYG 302
            FGGS G GGG GG G G  G+GN G  +GGG           G+YNDFGNYN Q SN+G
Sbjct: 227 GFGGSRG-GGGYGGSGDGYNGFGNDGSNFGGG-----------GSYNDFGNYNNQSSNFG 274

Query: 303 PMKSGNFGGSRNMGGPYGGGN-----------YGPGGSGGSGGYGGR 338
           PMK GNFGG  +  GPYGGG            YG   S  S G G R
Sbjct: 275 PMKGGNFGGRSS--GPYGGGGQYFAKPRNQGGYGGSSSSSSYGSGRR 319



 Score = 66.2 bits (160), Expect = 4e-11
 Identities = 30/94 (31%), Positives = 56/94 (59%)

Query: 89  ESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 148
           +S  P     ++KLF+GG+  +T +  LR +FE++G +    ++ D  + + RGFGFVT+
Sbjct: 3   KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62

Query: 149 DDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 182
              + VD  +  + H ++G   E ++A+SR++ Q
Sbjct: 63  ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQ 96


>gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Homo
           sapiens]
          Length = 320

 Score =  412 bits (1058), Expect = e-115
 Identities = 210/334 (62%), Positives = 240/334 (71%), Gaps = 35/334 (10%)

Query: 3   REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 62
           +E EQ RKLFIGGLSFETT+ESLR+++EQWG LTDCVVMRDP +KRSRGFGFVT++++ E
Sbjct: 8   KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67

Query: 63  VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 122
           VDAAM   PH +DGRVVEPKRAV+RE+S +PGAH+TVKK+FVGGIKEDTEEHHLRDYFE+
Sbjct: 68  VDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 127

Query: 123 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 182
           YGKI+ IEI+TDR SGKKRGF FVTFDDHD VDKIV+QKYHT+ GHN EVRKAL +QEM 
Sbjct: 128 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMA 187

Query: 183 EVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGG 242
              SS+ GR G+          GNFG G G  F GG+D +G G  F           G G
Sbjct: 188 SASSSQRGRRGS----------GNFGGGRGDGF-GGNDNFGRGGNFS----------GRG 226

Query: 243 NFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYG 302
            FGGS G GGG GG G G  G+GN G  +GGG           G+YNDFGNYN Q SN+G
Sbjct: 227 GFGGSCG-GGGYGGSGDGYNGFGNDGSNFGGG-----------GSYNDFGNYNNQSSNFG 274

Query: 303 PMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYG 336
           PMK GNFGG     GPYGGG          GGYG
Sbjct: 275 PMKGGNFGG--RSSGPYGGGGQYFAKPQNQGGYG 306



 Score = 65.9 bits (159), Expect = 5e-11
 Identities = 30/94 (31%), Positives = 55/94 (58%)

Query: 89  ESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 148
           +S  P     ++KLF+GG+  +T +  LR +FE++G +    ++ D  + + RGFGFVT+
Sbjct: 3   KSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62

Query: 149 DDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 182
              + VD  +    H ++G   E ++A+SR++ Q
Sbjct: 63  ATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQ 96


>gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Homo
           sapiens]
          Length = 320

 Score =  412 bits (1058), Expect = e-115
 Identities = 210/334 (62%), Positives = 240/334 (71%), Gaps = 35/334 (10%)

Query: 3   REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 62
           +E EQ RKLFIGGLSFETT+ESLR+++EQWG LTDCVVMRDP +KRSRGFGFVT++++ E
Sbjct: 8   KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67

Query: 63  VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 122
           VDAAM   PH +DGRVVEPKRAV+RE+S +PGAH+TVKK+FVGGIKEDTEEHHLRDYFE+
Sbjct: 68  VDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 127

Query: 123 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 182
           YGKI+ IEI+TDR SGKKRGF FVTFDDHD VDKIV+QKYHT+ GHN EVRKAL +QEM 
Sbjct: 128 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMA 187

Query: 183 EVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGG 242
              SS+ GR G+          GNFG G G  F GG+D +G G  F           G G
Sbjct: 188 SASSSQRGRRGS----------GNFGGGRGDGF-GGNDNFGRGGNFS----------GRG 226

Query: 243 NFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYG 302
            FGGS G GGG GG G G  G+GN G  +GGG           G+YNDFGNYN Q SN+G
Sbjct: 227 GFGGSCG-GGGYGGSGDGYNGFGNDGSNFGGG-----------GSYNDFGNYNNQSSNFG 274

Query: 303 PMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYG 336
           PMK GNFGG     GPYGGG          GGYG
Sbjct: 275 PMKGGNFGG--RSSGPYGGGGQYFAKPQNQGGYG 306



 Score = 65.9 bits (159), Expect = 5e-11
 Identities = 30/94 (31%), Positives = 55/94 (58%)

Query: 89  ESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 148
           +S  P     ++KLF+GG+  +T +  LR +FE++G +    ++ D  + + RGFGFVT+
Sbjct: 3   KSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62

Query: 149 DDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 182
              + VD  +    H ++G   E ++A+SR++ Q
Sbjct: 63  ATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQ 96


>gi|89035135 PREDICTED: similar to heterogeneous nuclear
           ribonucleoprotein A1-like [Homo sapiens]
          Length = 321

 Score =  364 bits (935), Expect = e-101
 Identities = 189/337 (56%), Positives = 226/337 (67%), Gaps = 40/337 (11%)

Query: 3   REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 62
           +E +Q RKLFIGGL FET++ESLR++ EQWG LT+CVVMRDP + RSRGFGFV + ++ E
Sbjct: 8   KEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEE 67

Query: 63  VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 122
           VDAAM ARPH + GRVVEPK AV+RE+S +PGA++TVKK+FVGGIKEDTEEH LRDY+E+
Sbjct: 68  VDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQ 127

Query: 123 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 182
           YGK + IEI+TD+ SGKKR F FVTFD+HD  DKIV+QKYH +NGHN EVRKALS+Q+M 
Sbjct: 128 YGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSKQKMA 187

Query: 183 EVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGG 242
              SS+           SR G GNFG G G  F  G+D +G G                G
Sbjct: 188 SAPSSQR----------SRSGSGNFGGGRGGGF-SGNDNFGHG----------------G 220

Query: 243 NFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYG 302
           NF G  G+GG  GG   G  G+GN G  +GGG            +YNDFGN N Q SN+G
Sbjct: 221 NFSGCGGFGGSHGGSADGYNGFGNDGKNFGGG-----------SSYNDFGNCNNQSSNFG 269

Query: 303 PMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRS 339
           PMK GNFGG R+    YGGG          GGYGG S
Sbjct: 270 PMKGGNFGGKRSC--LYGGGGQYFAKPQNQGGYGGSS 304



 Score = 60.1 bits (144), Expect = 3e-09
 Identities = 28/94 (29%), Positives = 53/94 (56%)

Query: 89  ESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 148
           +S  P     ++KLF+GG++ +T +  LR + E++G +    ++ D  + + RGFGFV +
Sbjct: 3   KSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPY 62

Query: 149 DDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 182
              + VD  +  + H + G   E + A+SR++ Q
Sbjct: 63  VTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQ 96


>gi|89034333 PREDICTED: similar to heterogeneous nuclear
           ribonucleoprotein A1-like [Homo sapiens]
          Length = 321

 Score =  364 bits (935), Expect = e-101
 Identities = 189/337 (56%), Positives = 226/337 (67%), Gaps = 40/337 (11%)

Query: 3   REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 62
           +E +Q RKLFIGGL FET++ESLR++ EQWG LT+CVVMRDP + RSRGFGFV + ++ E
Sbjct: 8   KEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEE 67

Query: 63  VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 122
           VDAAM ARPH + GRVVEPK AV+RE+S +PGA++TVKK+FVGGIKEDTEEH LRDY+E+
Sbjct: 68  VDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQ 127

Query: 123 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 182
           YGK + IEI+TD+ SGKKR F FVTFD+HD  DKIV+QKYH +NGHN EVRKALS+Q+M 
Sbjct: 128 YGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSKQKMA 187

Query: 183 EVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGG 242
              SS+           SR G GNFG G G  F  G+D +G G                G
Sbjct: 188 SAPSSQR----------SRSGSGNFGGGRGGGF-SGNDNFGHG----------------G 220

Query: 243 NFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYG 302
           NF G  G+GG  GG   G  G+GN G  +GGG            +YNDFGN N Q SN+G
Sbjct: 221 NFSGCGGFGGSHGGSADGYNGFGNDGKNFGGG-----------SSYNDFGNCNNQSSNFG 269

Query: 303 PMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRS 339
           PMK GNFGG R+    YGGG          GGYGG S
Sbjct: 270 PMKGGNFGGKRSC--LYGGGGQYFAKPQNQGGYGGSS 304



 Score = 60.1 bits (144), Expect = 3e-09
 Identities = 28/94 (29%), Positives = 53/94 (56%)

Query: 89  ESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 148
           +S  P     ++KLF+GG++ +T +  LR + E++G +    ++ D  + + RGFGFV +
Sbjct: 3   KSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPY 62

Query: 149 DDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 182
              + VD  +  + H + G   E + A+SR++ Q
Sbjct: 63  VTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQ 96


>gi|169203146 PREDICTED: similar to heterogeneous nuclear
           ribonucleoprotein A1-like [Homo sapiens]
          Length = 321

 Score =  363 bits (931), Expect = e-100
 Identities = 189/337 (56%), Positives = 225/337 (66%), Gaps = 40/337 (11%)

Query: 3   REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 62
           +E +Q RKLFIGGL FET++ESLR++ EQWG LT+CVVMRDP + RSRGFGFV + ++ E
Sbjct: 8   KEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEE 67

Query: 63  VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 122
           VDAAM ARPH + GRVVEPK AV+RE+S +PGA++TVKK+FVGGIKEDTEEH LRDY+E+
Sbjct: 68  VDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQ 127

Query: 123 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 182
           YGK + IEI+TD+ SGKKR F FVTFD+HD  DKIV+QKYH +NGHN EVRKALS+Q+M 
Sbjct: 128 YGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSKQKMA 187

Query: 183 EVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGG 242
              SS+           SR G GNFG G G  F  G+D +G G                G
Sbjct: 188 SAPSSQR----------SRSGSGNFGGGRGGGF-SGNDNFGHG----------------G 220

Query: 243 NFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYG 302
           NF G  G GG  GG   G  G+GN G  +GGG            +YNDFGN N Q SN+G
Sbjct: 221 NFSGCGGLGGSHGGSADGYNGFGNDGKNFGGG-----------SSYNDFGNCNNQSSNFG 269

Query: 303 PMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRS 339
           PMK GNFGG R+    YGGG          GGYGG S
Sbjct: 270 PMKGGNFGGKRSC--LYGGGGQYFAKPQNQGGYGGSS 304



 Score = 60.1 bits (144), Expect = 3e-09
 Identities = 28/94 (29%), Positives = 53/94 (56%)

Query: 89  ESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 148
           +S  P     ++KLF+GG++ +T +  LR + E++G +    ++ D  + + RGFGFV +
Sbjct: 3   KSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPY 62

Query: 149 DDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 182
              + VD  +  + H + G   E + A+SR++ Q
Sbjct: 63  VTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQ 96


>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
           sapiens]
          Length = 305

 Score =  306 bits (784), Expect = 2e-83
 Identities = 171/339 (50%), Positives = 214/339 (63%), Gaps = 39/339 (11%)

Query: 4   EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 63
           E  Q  KLFIGGL+ +T+E  LR ++E +G LTDCVV+ +P +KRSR FGFVT+S++ E 
Sbjct: 2   ENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA 61

Query: 64  DAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEY 123
           DAAMAA PH++DG  VE KRAV+RE+S +PGAH  VKKLFVGG+K D  E  L ++F ++
Sbjct: 62  DAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQF 121

Query: 124 GKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQE 183
           G ++  EII D+QSGKKRGFGFV F +HD  DK  + K+H I GH  EV+KA+ ++++  
Sbjct: 122 GTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIY- 180

Query: 184 VQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGN 243
                SG GG  G   SRGG G  G G      GG D  G  +G G GYN YGG  GGG 
Sbjct: 181 -----SGGGGG-GSRSSRGGRGGRGRG------GGRDQNGLSKGGGGGYNSYGGYGGGG- 227

Query: 244 FGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGP 303
                  GGG   YGGGG G             +YGG +YG+G +  FG+Y+Q  S+YGP
Sbjct: 228 -------GGGYNAYGGGGGG------------SSYGGSDYGNG-FGGFGSYSQHQSSYGP 267

Query: 304 MKSGNFGGSRNMGGPYGG-GNYGP--GGSGGSGGYGGRS 339
           MKSG  GG    G  +GG  N GP  GG GG GGYGG S
Sbjct: 268 MKSG--GGGGGGGSSWGGRSNSGPYRGGYGGGGGYGGSS 304



 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 65/250 (26%), Positives = 94/250 (37%), Gaps = 32/250 (12%)

Query: 101 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 160
           KLF+GG+   T E  LR +FE +G +    ++ + Q+ + R FGFVT+ + +  D  +  
Sbjct: 8   KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67

Query: 161 KYHTINGHNAEVRKALSRQEMQEVQSSRS-------GRGGNFGFGDSRGGGGNFGPGPGS 213
             H ++G+  E+++A+SR++     +          G  G+   GD       FG    +
Sbjct: 68  SPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKA 127

Query: 214 NFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGG 273
                    G  RGFG  Y                   G R       P      GG GG
Sbjct: 128 EIIADKQS-GKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYSGGGGG 186

Query: 274 GYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGG--PYGGGNYGPGGSGG 331
           G  +  GG  G G                       GG R+  G    GGG Y   G  G
Sbjct: 187 GSRSSRGGRGGRGR----------------------GGGRDQNGLSKGGGGGYNSYGGYG 224

Query: 332 SGGYGGRSRY 341
            GG GG + Y
Sbjct: 225 GGGGGGYNAY 234


>gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform a
           [Homo sapiens]
          Length = 332

 Score =  203 bits (517), Expect = 2e-52
 Identities = 107/299 (35%), Positives = 171/299 (57%), Gaps = 37/299 (12%)

Query: 3   REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 62
           + +E   K+F+GGLS++T+++ L++Y+ ++G++ DC +  DP + RSRGFGF+ F   A 
Sbjct: 64  KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAAS 123

Query: 63  VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 122
           V+  +  + H +DGRV++PK+A+A ++         VKK+FVGG+  +  E  +R+YF E
Sbjct: 124 VEKVLDQKEHRLDGRVIDPKKAMAMKKD-------PVKKIFVGGLNPEATEEKIREYFGE 176

Query: 123 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 182
           +G+I+ IE+  D +  K+RGF F+TF + +PV K++ +K+HT++G   E++ A  ++  Q
Sbjct: 177 FGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQ 236

Query: 183 EVQSSRSGRG----GNFGFGDSRGGGG---NFGPGPGSNFRGGSDGYGSGRGFGDGYNGY 235
           + Q    GRG    GN G G   GGGG   ++  G G+ +   + GYG  +G+G GY GY
Sbjct: 237 QQQYGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYW---NQGYGYQQGYGPGYGGY 293

Query: 236 GGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNY 294
              P G               Y G GPGY      Y  G  NYG      G+ N++  Y
Sbjct: 294 DYSPYG---------------YYGYGPGY-----DYSQGSTNYGKSQRRGGHQNNYKPY 332



 Score = 63.5 bits (153), Expect = 3e-10
 Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 5/99 (5%)

Query: 1   MEREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSM 60
           M  +K+  +K+F+GGL+ E TEE +R Y+ ++G++    +  DP   + RGF F+TF   
Sbjct: 146 MAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEE 205

Query: 61  AEVDAAMAARPHSIDG-----RVVEPKRAVAREESGKPG 94
             V   +  + H++ G     +V +PK    +++ G  G
Sbjct: 206 EPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYGSGG 244



 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 37/89 (41%), Positives = 40/89 (44%), Gaps = 12/89 (13%)

Query: 257 YGGGGPGY---GNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSR 313
           YG GG G    GN+G G GGG    GGG   S N   +GNY  Q   Y       +GG  
Sbjct: 240 YGSGGRGNRNRGNRGSGGGGG----GGGQSQSWNQG-YGNYWNQGYGYQQGYGPGYGGYD 294

Query: 314 NMGGPYGGGNYGPG--GSGGSGGYGGRSR 340
               PYG   YGPG   S GS  YG   R
Sbjct: 295 Y--SPYGYYGYGPGYDYSQGSTNYGKSQR 321


>gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo
           sapiens]
          Length = 420

 Score =  196 bits (499), Expect = 2e-50
 Identities = 104/277 (37%), Positives = 155/277 (55%), Gaps = 16/277 (5%)

Query: 10  KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69
           K+FIGGLS++T+++ L  Y  ++G++ DC +  DP + RSRGFGFV F   A VD  +  
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208

Query: 70  RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 129
           + H +DG++++PKRA A +    P      KK+FVGG+  DT E  +++YF  +G+I+ I
Sbjct: 209 KEHKLDGKLIDPKRAKALKGKEPP------KKVFVGGLSPDTSEEQIKEYFGAFGEIENI 262

Query: 130 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVR----KALSRQEMQEVQ 185
           E+  D ++ ++RGF F+T+ D +PV K++  +YH I     E++    K + RQ+ Q+ +
Sbjct: 263 ELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQK 322

Query: 186 SSR----SGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGG 241
             R     GRGG  G G  RG G N+  G  + +  G   Y S  G    Y+GYGG    
Sbjct: 323 GGRGAAAGGRGGTRGRG--RGQGQNWNQGFNNYYDQGYGNYNSAYGGDQNYSGYGGYDYT 380

Query: 242 GNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNY 278
           G   G+ GYG G   Y G    YG    G G   +NY
Sbjct: 381 GYNYGNYGYGQGYADYSGQQSTYGKASRGGGNHQNNY 417



 Score = 55.1 bits (131), Expect = 9e-08
 Identities = 27/95 (28%), Positives = 52/95 (54%), Gaps = 5/95 (5%)

Query: 5   KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVD 64
           KE  +K+F+GGLS +T+EE ++ Y+  +G++ +  +  D  +   RGF F+T++    V 
Sbjct: 229 KEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVK 288

Query: 65  AAMAARPHSIDG-----RVVEPKRAVAREESGKPG 94
             + +R H I       +V +PK    +++  + G
Sbjct: 289 KLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKG 323



 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 34/91 (37%), Positives = 42/91 (46%), Gaps = 11/91 (12%)

Query: 245 GGSPGYGGGRGGYGGGGPGYG---NQG--GGYGGGYDNYGGGNYGSGNYNDFGNYNQQPS 299
           GG     GGRGG  G G G G   NQG    Y  GY NY     G  NY+ +G Y+    
Sbjct: 323 GGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQNYSGYGGYDYTGY 382

Query: 300 NYGPMKSG----NFGGSRNMGG--PYGGGNY 324
           NYG    G    ++ G ++  G    GGGN+
Sbjct: 383 NYGNYGYGQGYADYSGQQSTYGKASRGGGNH 413



 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 32/92 (34%), Positives = 36/92 (39%), Gaps = 9/92 (9%)

Query: 252 GGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGG 311
           GGRG   GG  G   +G G G  +      N G  NY D G  N   +  G      +GG
Sbjct: 323 GGRGAAAGGRGGTRGRGRGQGQNW------NQGFNNYYDQGYGNYNSAYGGDQNYSGYGG 376

Query: 312 SRNMGGPYGGGNYGPG---GSGGSGGYGGRSR 340
               G  YG   YG G    SG    YG  SR
Sbjct: 377 YDYTGYNYGNYGYGQGYADYSGQQSTYGKASR 408


>gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b
           [Homo sapiens]
          Length = 336

 Score =  196 bits (499), Expect = 2e-50
 Identities = 113/317 (35%), Positives = 170/317 (53%), Gaps = 52/317 (16%)

Query: 3   REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 62
           + +E   K+FIGGLS++TT++ L++Y+ ++G++ DC +  DP + RSRGFGFV F     
Sbjct: 72  KNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESES 131

Query: 63  VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 122
           VD  M  + H ++G+V++PKRA A +          VKK+FVGG+  DT E  +R+YF  
Sbjct: 132 VDKVMDQKEHKLNGKVIDPKRAKAMKTKEP------VKKIFVGGLSPDTPEEKIREYFGG 185

Query: 123 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 182
           +G++++IE+  D ++ K+RGF F+TF + +PV KI+ +KYH +     E++ A+S+++ Q
Sbjct: 186 FGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQ 245

Query: 183 EVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGG 242
           + Q   S RGG  G    RGG      GP  N+               GY+ Y       
Sbjct: 246 QQQQWGS-RGGFAGRARGRGG------GPSQNWN-------------QGYSNY------- 278

Query: 243 NFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYG 302
                  +  G G YG    GYG  GG    GY+NY G          +G+Y+ Q S YG
Sbjct: 279 -------WNQGYGNYGYNSQGYGGYGGYDYTGYNNYYG----------YGDYSNQQSGYG 321

Query: 303 PMKSGNFGGSRNMGGPY 319
             K    GG +N   PY
Sbjct: 322 --KVSRRGGHQNSYKPY 336



 Score = 33.1 bits (74), Expect = 0.37
 Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 10/71 (14%)

Query: 269 GGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGG 328
           GG+ G     GGG           N+NQ  SNY     GN+G +    G YGG +Y   G
Sbjct: 254 GGFAGRARGRGGG--------PSQNWNQGYSNYWNQGYGNYGYNSQGYGGYGGYDY--TG 303

Query: 329 SGGSGGYGGRS 339
                GYG  S
Sbjct: 304 YNNYYGYGDYS 314


>gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a
           [Homo sapiens]
          Length = 355

 Score =  195 bits (496), Expect = 4e-50
 Identities = 112/310 (36%), Positives = 167/310 (53%), Gaps = 52/310 (16%)

Query: 10  KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69
           K+FIGGLS++TT++ L++Y+ ++G++ DC +  DP + RSRGFGFV F     VD  M  
Sbjct: 98  KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157

Query: 70  RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 129
           + H ++G+V++PKRA A +          VKK+FVGG+  DT E  +R+YF  +G++++I
Sbjct: 158 KEHKLNGKVIDPKRAKAMKTKEP------VKKIFVGGLSPDTPEEKIREYFGGFGEVESI 211

Query: 130 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRS 189
           E+  D ++ K+RGF F+TF + +PV KI+ +KYH +     E++ A+S+++ Q+ Q   S
Sbjct: 212 ELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGS 271

Query: 190 GRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPG 249
            RGG  G    RGG      GP  N+               GY+ Y              
Sbjct: 272 -RGGFAGRARGRGG------GPSQNWN-------------QGYSNY-------------- 297

Query: 250 YGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNF 309
           +  G G YG    GYG  GG    GY+NY G          +G+Y+ Q S YG  K    
Sbjct: 298 WNQGYGNYGYNSQGYGGYGGYDYTGYNNYYG----------YGDYSNQQSGYG--KVSRR 345

Query: 310 GGSRNMGGPY 319
           GG +N   PY
Sbjct: 346 GGHQNSYKPY 355



 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 28/87 (32%), Positives = 49/87 (56%)

Query: 3   REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 62
           + KE  +K+F+GGLS +T EE +R Y+  +G++    +  D  + + RGF F+TF     
Sbjct: 176 KTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEP 235

Query: 63  VDAAMAARPHSIDGRVVEPKRAVAREE 89
           V   M  + H++     E K A+++E+
Sbjct: 236 VKKIMEKKYHNVGLSKCEIKVAMSKEQ 262



 Score = 33.1 bits (74), Expect = 0.37
 Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 10/71 (14%)

Query: 269 GGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGG 328
           GG+ G     GGG           N+NQ  SNY     GN+G +    G YGG +Y   G
Sbjct: 273 GGFAGRARGRGGG--------PSQNWNQGYSNYWNQGYGNYGYNSQGYGGYGGYDY--TG 322

Query: 329 SGGSGGYGGRS 339
                GYG  S
Sbjct: 323 YNNYYGYGDYS 333



 Score = 28.9 bits (63), Expect = 6.9
 Identities = 20/65 (30%), Positives = 23/65 (35%), Gaps = 3/65 (4%)

Query: 237 GGPGGGNFGGSPGYGGGRGGYGGGGPGYGN---QGGGYGGGYDNYGGGNYGSGNYNDFGN 293
           GG  G   G       G     G G G G     GG  GG  ++ G     S N  D G+
Sbjct: 20  GGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGSAESEGAKIDASKNEEDEGH 79

Query: 294 YNQQP 298
            N  P
Sbjct: 80  SNSSP 84


>gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform b
           [Homo sapiens]
          Length = 285

 Score =  179 bits (453), Expect = 4e-45
 Identities = 87/237 (36%), Positives = 142/237 (59%), Gaps = 22/237 (9%)

Query: 3   REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 62
           + +E   K+F+GGLS++T+++ L++Y+ ++G++ DC +  DP + RSRGFGF+ F   A 
Sbjct: 64  KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAAS 123

Query: 63  VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 122
           V+  +  + H +DGRV++PK+A+A ++         VKK+FVGG+  +  E  +R+YF E
Sbjct: 124 VEKVLDQKEHRLDGRVIDPKKAMAMKKD-------PVKKIFVGGLNPEATEEKIREYFGE 176

Query: 123 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 182
           +G+I+ IE+  D +  K+RGF F+TF + +PV K++ +K+HT++G   E++ A  ++  Q
Sbjct: 177 FGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQ 236

Query: 183 EVQSSRSGRG----GNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGY 235
           + Q    GRG    GN G G   GGGG            GS  YG  +  G   N Y
Sbjct: 237 QQQYGSGGRGNRNRGNRGSGGGGGGGGQ-----------GSTNYGKSQRRGGHQNNY 282



 Score = 63.5 bits (153), Expect = 3e-10
 Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 5/99 (5%)

Query: 1   MEREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSM 60
           M  +K+  +K+F+GGL+ E TEE +R Y+ ++G++    +  DP   + RGF F+TF   
Sbjct: 146 MAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEE 205

Query: 61  AEVDAAMAARPHSIDG-----RVVEPKRAVAREESGKPG 94
             V   +  + H++ G     +V +PK    +++ G  G
Sbjct: 206 EPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYGSGG 244



 Score = 37.7 bits (86), Expect = 0.015
 Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 250 YG-GGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNY 294
           YG GGRG    G  G G  GGG G G  NYG      G+ N++  Y
Sbjct: 240 YGSGGRGNRNRGNRGSGGGGGGGGQGSTNYGKSQRRGGHQNNYKPY 285



 Score = 34.7 bits (78), Expect = 0.13
 Identities = 21/50 (42%), Positives = 23/50 (46%), Gaps = 8/50 (16%)

Query: 257 YGGGGPGY---GNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGP 303
           YG GG G    GN+G G GG     GGG  GS NY          +NY P
Sbjct: 240 YGSGGRGNRNRGNRGSGGGG-----GGGGQGSTNYGKSQRRGGHQNNYKP 284


>gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d
           [Homo sapiens]
          Length = 287

 Score =  172 bits (436), Expect = 4e-43
 Identities = 85/220 (38%), Positives = 135/220 (61%), Gaps = 7/220 (3%)

Query: 3   REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 62
           + +E   K+FIGGLS++TT++ L++Y+ ++G++ DC +  DP + RSRGFGFV F     
Sbjct: 72  KNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESES 131

Query: 63  VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 122
           VD  M  + H ++G+V++PKRA A +          VKK+FVGG+  DT E  +R+YF  
Sbjct: 132 VDKVMDQKEHKLNGKVIDPKRAKAMKTKEP------VKKIFVGGLSPDTPEEKIREYFGG 185

Query: 123 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 182
           +G++++IE+  D ++ K+RGF F+TF + +PV KI+ +KYH +     E++ A+S+++ Q
Sbjct: 186 FGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQ 245

Query: 183 EVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGY 222
           + Q     RGG  G    RGG    G G  S   G  + Y
Sbjct: 246 Q-QQQWGSRGGFAGRARGRGGDQQSGYGKVSRRGGHQNSY 284


>gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c
           [Homo sapiens]
          Length = 306

 Score =  171 bits (433), Expect = 9e-43
 Identities = 84/213 (39%), Positives = 132/213 (61%), Gaps = 7/213 (3%)

Query: 10  KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69
           K+FIGGLS++TT++ L++Y+ ++G++ DC +  DP + RSRGFGFV F     VD  M  
Sbjct: 98  KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157

Query: 70  RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 129
           + H ++G+V++PKRA A +          VKK+FVGG+  DT E  +R+YF  +G++++I
Sbjct: 158 KEHKLNGKVIDPKRAKAMKTKEP------VKKIFVGGLSPDTPEEKIREYFGGFGEVESI 211

Query: 130 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRS 189
           E+  D ++ K+RGF F+TF + +PV KI+ +KYH +     E++ A+S+++ Q+ Q    
Sbjct: 212 ELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ-QQQWG 270

Query: 190 GRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGY 222
            RGG  G    RGG    G G  S   G  + Y
Sbjct: 271 SRGGFAGRARGRGGDQQSGYGKVSRRGGHQNSY 303



 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 28/87 (32%), Positives = 49/87 (56%)

Query: 3   REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 62
           + KE  +K+F+GGLS +T EE +R Y+  +G++    +  D  + + RGF F+TF     
Sbjct: 176 KTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEP 235

Query: 63  VDAAMAARPHSIDGRVVEPKRAVAREE 89
           V   M  + H++     E K A+++E+
Sbjct: 236 VKKIMEKKYHNVGLSKCEIKVAMSKEQ 262



 Score = 28.9 bits (63), Expect = 6.9
 Identities = 20/65 (30%), Positives = 23/65 (35%), Gaps = 3/65 (4%)

Query: 237 GGPGGGNFGGSPGYGGGRGGYGGGGPGYGN---QGGGYGGGYDNYGGGNYGSGNYNDFGN 293
           GG  G   G       G     G G G G     GG  GG  ++ G     S N  D G+
Sbjct: 20  GGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGSAESEGAKIDASKNEEDEGH 79

Query: 294 YNQQP 298
            N  P
Sbjct: 80  SNSSP 84


>gi|20373175 musashi 2 isoform a [Homo sapiens]
          Length = 328

 Score =  165 bits (418), Expect = 5e-41
 Identities = 95/279 (34%), Positives = 148/279 (53%), Gaps = 7/279 (2%)

Query: 10  KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69
           K+FIGGLS++T+ +SLR+Y+ ++G++ +C+VMRDP +KRSRGFGFVTF+  A VD  +  
Sbjct: 22  KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81

Query: 70  RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 129
             H +D + ++PK A  R    +P      KK+FVGG+  +T    ++ YFE++GK++  
Sbjct: 82  PHHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDA 139

Query: 130 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRS 189
            ++ D+ + + RGFGFVTF++ D V+K+    +H IN    E +KA  ++ M    +   
Sbjct: 140 MLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGR 199

Query: 190 GRGGNFGFGDSRGGGGNFG-PGPGSNFRGGSDGYGSGRGFG-DGYNGYGGGPGGGNFGGS 247
            RG  +       G G  G P   + +  G  G+    G+   G+     GP       +
Sbjct: 200 ARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQFPGFPAAAYGPVAAAAVAA 259

Query: 248 PGYGGGRGGYGGGGPGYGNQG---GGYGGGYDNYGGGNY 283
               G      GG PG  + G     YG    + G GNY
Sbjct: 260 ARGSGSNPARPGGFPGANSPGPVADLYGPASQDSGVGNY 298



 Score = 73.6 bits (179), Expect = 2e-13
 Identities = 35/86 (40%), Positives = 53/86 (61%)

Query: 9   RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
           +K+F+GGLS  T  E ++ Y+EQ+GK+ D ++M D  + R RGFGFVTF +   V+    
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169

Query: 69  ARPHSIDGRVVEPKRAVAREESGKPG 94
              H I+ ++VE K+A  +E    PG
Sbjct: 170 IHFHEINNKMVECKKAQPKEVMFPPG 195


>gi|4505255 musashi 1 [Homo sapiens]
          Length = 362

 Score =  162 bits (410), Expect = 4e-40
 Identities = 80/189 (42%), Positives = 119/189 (62%), Gaps = 3/189 (1%)

Query: 10  KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69
           K+FIGGLS++TT+E LR Y+ Q+G++ +C+VMRDP +KRSRGFGFVTF   A VD  +A 
Sbjct: 21  KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80

Query: 70  RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 129
             H +D + ++PK A  R    +P      KK+FVGG+  +T    ++ YFE++GK+D  
Sbjct: 81  SRHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDA 138

Query: 130 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRS 189
            ++ D+ + + RGFGFVTF+  D V+K+    +H IN    E +KA  ++ M    S+R 
Sbjct: 139 MLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSPTGSAR- 197

Query: 190 GRGGNFGFG 198
           GR     +G
Sbjct: 198 GRSRVMPYG 206



 Score = 75.1 bits (183), Expect = 8e-14
 Identities = 36/87 (41%), Positives = 54/87 (62%)

Query: 9   RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
           +K+F+GGLS  TT E ++ Y+EQ+GK+ D ++M D  + R RGFGFVTF S   V+    
Sbjct: 109 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168

Query: 69  ARPHSIDGRVVEPKRAVAREESGKPGA 95
              H I+ ++VE K+A  +E     G+
Sbjct: 169 IHFHEINNKMVECKKAQPKEVMSPTGS 195


>gi|25121993 musashi 2 isoform b [Homo sapiens]
          Length = 251

 Score =  158 bits (400), Expect = 6e-39
 Identities = 82/219 (37%), Positives = 128/219 (58%), Gaps = 7/219 (3%)

Query: 10  KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69
           K+FIGGLS++T+ +SLR+Y+ ++G++ +C+VMRDP +KRSRGFGFVTF+  A VD  +  
Sbjct: 18  KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77

Query: 70  RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 129
             H +D + ++PK A  R    +P      KK+FVGG+  +T    ++ YFE++GK++  
Sbjct: 78  PHHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDA 135

Query: 130 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRS 189
            ++ D+ + + RGFGFVTF++ D V+K+    +H IN    E +KA  ++ M    +   
Sbjct: 136 MLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGR 195

Query: 190 GRG-----GNFGFGDSRGGGGNFGPGPGSNFRGGSDGYG 223
            RG       F  G    G  NF    G  + G +  YG
Sbjct: 196 ARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYG 234



 Score = 73.6 bits (179), Expect = 2e-13
 Identities = 35/86 (40%), Positives = 53/86 (61%)

Query: 9   RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
           +K+F+GGLS  T  E ++ Y+EQ+GK+ D ++M D  + R RGFGFVTF +   V+    
Sbjct: 106 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 165

Query: 69  ARPHSIDGRVVEPKRAVAREESGKPG 94
              H I+ ++VE K+A  +E    PG
Sbjct: 166 IHFHEINNKMVECKKAQPKEVMFPPG 191


>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
          Length = 378

 Score =  154 bits (389), Expect = 1e-37
 Identities = 84/250 (33%), Positives = 132/250 (52%), Gaps = 18/250 (7%)

Query: 6   EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDA 65
           ++  KLF+GGL + TT+E+LR+Y+ Q+G++ DCV+M+D  + +SRGFGFV F     V  
Sbjct: 7   DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66

Query: 66  AMAARPHSIDGRVVEPKRAVARE------------ESGKPGAHVTVKKLFVGGIKEDTEE 113
            +A+RPH++DGR ++PK    R             + G    +    K+FVGGI  +  E
Sbjct: 67  VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGE 126

Query: 114 HHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVR 173
             LR+YF+++G +  + +I D +  + RGFGF+TF+D   VD+ V   +H I G   EV+
Sbjct: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186

Query: 174 KALSRQEMQEVQSSRSGRGGNFGFGDS--RGGGGNFGPGPGSNFRGGSDGYGSGRGFGDG 231
           +A    E ++ +S   G+ G   +G          +   P   ++ G    G     G  
Sbjct: 187 RA----EPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQA 242

Query: 232 YNGYGGGPGG 241
             GYG  P G
Sbjct: 243 IGGYGPPPAG 252



 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 36/96 (37%), Positives = 55/96 (57%), Gaps = 4/96 (4%)

Query: 4   EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 63
           +  +  K+F+GG+     E  LR Y++++G +T+ V++ D   +R RGFGF+TF     V
Sbjct: 108 DNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSV 167

Query: 64  DAAMAARPHSIDGRVVEPKRAVAREES----GKPGA 95
           D A+    H I G+ VE KRA  R+      G+PGA
Sbjct: 168 DQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGA 203


>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
          Length = 407

 Score =  154 bits (389), Expect = 1e-37
 Identities = 84/250 (33%), Positives = 132/250 (52%), Gaps = 18/250 (7%)

Query: 6   EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDA 65
           ++  KLF+GGL + TT+E+LR+Y+ Q+G++ DCV+M+D  + +SRGFGFV F     V  
Sbjct: 7   DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66

Query: 66  AMAARPHSIDGRVVEPKRAVARE------------ESGKPGAHVTVKKLFVGGIKEDTEE 113
            +A+RPH++DGR ++PK    R             + G    +    K+FVGGI  +  E
Sbjct: 67  VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGE 126

Query: 114 HHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVR 173
             LR+YF+++G +  + +I D +  + RGFGF+TF+D   VD+ V   +H I G   EV+
Sbjct: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186

Query: 174 KALSRQEMQEVQSSRSGRGGNFGFGDS--RGGGGNFGPGPGSNFRGGSDGYGSGRGFGDG 231
           +A    E ++ +S   G+ G   +G          +   P   ++ G    G     G  
Sbjct: 187 RA----EPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQA 242

Query: 232 YNGYGGGPGG 241
             GYG  P G
Sbjct: 243 IGGYGPPPAG 252



 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 36/96 (37%), Positives = 55/96 (57%), Gaps = 4/96 (4%)

Query: 4   EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 63
           +  +  K+F+GG+     E  LR Y++++G +T+ V++ D   +R RGFGF+TF     V
Sbjct: 108 DNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSV 167

Query: 64  DAAMAARPHSIDGRVVEPKRAVAREES----GKPGA 95
           D A+    H I G+ VE KRA  R+      G+PGA
Sbjct: 168 DQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGA 203



 Score = 31.2 bits (69), Expect = 1.4
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 222 YGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYG 279
           YG   G+G   +G+G   G  +    P   GG    G GGP  G  G G G  ++  G
Sbjct: 346 YGQYAGYGQDLSGFG--QGFSDPSQQPPSYGGPSVPGSGGPPAGGSGFGRGQNHNVQG 401


>gi|239747524 PREDICTED: similar to serum response factor-related
           protein C4 [Homo sapiens]
          Length = 434

 Score =  126 bits (316), Expect = 3e-29
 Identities = 67/127 (52%), Positives = 76/127 (59%), Gaps = 18/127 (14%)

Query: 227 GFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGG-----YDNYGGG 281
           G GDGYNG+G   G G  GG PGY GG  GYG  G GYG+QG GYGG      Y+N GGG
Sbjct: 46  GRGDGYNGFGNDGGYG--GGGPGYSGGSRGYGSVGQGYGSQGSGYGGSGSYNSYNNGGGG 103

Query: 282 NYG---------SGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGS 332
           ++G         SG+YNDFGNYN Q SN+GP K GNFGG  ++  P GGG          
Sbjct: 104 SFGGGSGSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSV--PCGGGGQYFVKPQNQ 161

Query: 333 GGYGGRS 339
           GGYGG S
Sbjct: 162 GGYGGSS 168



 Score = 32.0 bits (71), Expect = 0.82
 Identities = 23/54 (42%), Positives = 23/54 (42%), Gaps = 10/54 (18%)

Query: 288 YNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRSRY 341
           YN FGN       YG    G  GGSR  G    G  YG  GSG    YGG   Y
Sbjct: 51  YNGFGN----DGGYGGGGPGYSGGSRGYGSV--GQGYGSQGSG----YGGSGSY 94


>gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]
          Length = 589

 Score =  114 bits (286), Expect = 1e-25
 Identities = 107/328 (32%), Positives = 132/328 (40%), Gaps = 95/328 (28%)

Query: 102 LFVGGIKEDTEEHHLRDYFEEYGKIDT--------IEIITDRQSGKKRGFGFVTFDDHDP 153
           +FV G+ E      + ++F++ G I T        I + TD+ +GK +G   V+FDD  P
Sbjct: 233 IFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTGKPKGEATVSFDD-PP 291

Query: 154 VDKIVLQKYH--TINGHNAEVRKALSRQEMQEVQSS---RSGRGGNFGFGDSRGGGG--- 205
             K  +  +     +G+  +V  A  R E      S   R GRGG  G G  +G GG   
Sbjct: 292 SAKAAIDWFDGKEFHGNIIKVSFATRRPEFMRGGGSGGGRRGRGGYRGRGGFQGRGGDPK 351

Query: 206 --------------NFG----------PGP------GSNFRG------------------ 217
                         NF           P P      G +FRG                  
Sbjct: 352 SGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPSGGDFRGRGYGGERGYRGRGGRGGD 411

Query: 218 ----GSD----GYGSGRGFGDGYNG------YGGGPGGGNFGGSPG----------YGGG 253
               G D    GYG  R  G GY+G      YGG   GG +GG  G          YGG 
Sbjct: 412 RGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDRGGGYGGDRGGGYGGD 471

Query: 254 RGG-YGGGGPGYG-NQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKS-GNFG 310
           RGG YGG   GYG ++GGGYGG    YGG   G G   D G Y      YG  +S G +G
Sbjct: 472 RGGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGGYG--GDRGGYGGDRGGYGGDRSRGGYG 529

Query: 311 GSRNMGGPYGGGNYGP-GGSGGSGGYGG 337
           G R  G  YGG   G  GG    GGYGG
Sbjct: 530 GDRGGGSGYGGDRSGGYGGDRSGGGYGG 557



 Score =  114 bits (286), Expect = 1e-25
 Identities = 70/156 (44%), Positives = 77/156 (49%), Gaps = 12/156 (7%)

Query: 192 GGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNG-----YGGGPGGGNFGG 246
           GG +G GD   GGG  G   G  + G   G G G   G GY G     YGG  GGG  G 
Sbjct: 421 GGGYG-GDRSSGGGYSGDRSGGGYGGDRSGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGD 479

Query: 247 SPGYGGGR-GGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQ---PSNYG 302
             GYGG R GGYGG   GYG   GGYGG    YGG   G G     G Y       S YG
Sbjct: 480 RGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYG 539

Query: 303 PMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGR 338
             +SG +GG R+ GG   GG+ G G  G  GGYGG+
Sbjct: 540 GDRSGGYGGDRSGGG--YGGDRGGGYGGDRGGYGGK 573



 Score = 79.0 bits (193), Expect = 6e-15
 Identities = 52/114 (45%), Positives = 62/114 (54%), Gaps = 17/114 (14%)

Query: 191 RGGNFG-----FGDSRGGGGNFGPGPGSNFRGGSDGYGSGR-GFGDGYNGYGG----GPG 240
           RGG +G     +G  RGGG  +G G    + G   GYG  R G+G    GYGG    G  
Sbjct: 472 RGGGYGGDRGGYGGDRGGG--YG-GDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGY 528

Query: 241 GGNFGGSPGYGGGR-GGYGG--GGPGY-GNQGGGYGGGYDNYGGGNYGSGNYND 290
           GG+ GG  GYGG R GGYGG   G GY G++GGGYGG    YGG   G  +Y +
Sbjct: 529 GGDRGGGSGYGGDRSGGYGGDRSGGGYGGDRGGGYGGDRGGYGGKMGGRNDYRN 582



 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 45/169 (26%), Positives = 60/169 (35%), Gaps = 18/169 (10%)

Query: 187 SRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGS-GRGFGDGYNGYGGGPGGG--- 242
           S  G  G+ G+G +      +G    S++     GY S G+ +   Y GY          
Sbjct: 18  STYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQSYSQSYGGYENQKQSSYSQ 77

Query: 243 ---NFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPS 299
              N  G        G  GG  P Y     G    YD   G +   G+Y++  NY+QQ  
Sbjct: 78  QPYNNQGQQQNMESSGSQGGRAPSYDQPDYGQQDSYDQQSGYDQHQGSYDEQSNYDQQHD 137

Query: 300 NYGPMKSGNFGGSRNMG----------GPYGGGNYGPGGS-GGSGGYGG 337
           +Y   +        N              YG  N G GGS GG  G GG
Sbjct: 138 SYSQNQQSYHSQRENYSHHTQDDRRDVSRYGEDNRGYGGSQGGGRGRGG 186



 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 39/128 (30%), Positives = 47/128 (36%), Gaps = 17/128 (13%)

Query: 219 SDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNY 278
           S  YG   G    Y+ YG         GS GYG     Y G G         YG  Y  Y
Sbjct: 4   SGSYGQSGGEQQSYSTYGN-------PGSQGYGQASQSYSGYGQ---TTDSSYGQNYSGY 53

Query: 279 GGGNYGSGNYNDFGNY-NQQPSNYGPMKSGNFGGSRNM--GGPYGG--GNYGPGGSGGSG 333
              +YG      +G Y NQ+ S+Y      N G  +NM   G  GG   +Y     G   
Sbjct: 54  --SSYGQSYSQSYGGYENQKQSSYSQQPYNNQGQQQNMESSGSQGGRAPSYDQPDYGQQD 111

Query: 334 GYGGRSRY 341
            Y  +S Y
Sbjct: 112 SYDQQSGY 119



 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 24/55 (43%), Positives = 29/55 (52%), Gaps = 12/55 (21%)

Query: 228 FGDGYNGYGGGPGGGNFGGSPGYGGGRGGY--GGGGPGYGNQGGGYGGGYDNYGG 280
           +G+   GYGG  GGG          GRGGY   G GP  G+ GG   GG+ N+GG
Sbjct: 167 YGEDNRGYGGSQGGGR---------GRGGYDKDGRGPMTGSSGGD-RGGFKNFGG 211



 Score = 33.9 bits (76), Expect = 0.22
 Identities = 65/266 (24%), Positives = 88/266 (33%), Gaps = 74/266 (27%)

Query: 122 EYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV------LQKYHTINGHNAEVRKA 175
           +YG+ D+     D+QSG  +  G  ++D+    D+         Q YH+    N      
Sbjct: 106 DYGQQDSY----DQQSGYDQHQG--SYDEQSNYDQQHDSYSQNQQSYHS-QRENYSHHTQ 158

Query: 176 LSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGY 235
             R+++        G GG+ G G  RGG    G GP +   GG  G              
Sbjct: 159 DDRRDVSRYGEDNRGYGGSQGGGRGRGGYDKDGRGPMTGSSGGDRG-------------- 204

Query: 236 GGGPGGGNFGGSPGYGGGRGGYGGGGPGYGN----QGGGYGGGYDNYG---------GGN 282
               G  NFGG   YG              N    QG G G   D  G           N
Sbjct: 205 ----GFKNFGGHRDYGPRTDADSESDNSDNNTIFVQGLGEGVSTDQVGEFFKQIGIIKTN 260

Query: 283 YGSGN-----YNDFG----------NYNQQPSN------------YGPMKSGNFGGSR-- 313
             +G      Y D            +++  PS             +G +   +F   R  
Sbjct: 261 KKTGKPMINLYTDKDTGKPKGEATVSFDDPPSAKAAIDWFDGKEFHGNIIKVSFATRRPE 320

Query: 314 -NMGGPYGGGNYGPGGSGGSGGYGGR 338
              GG  GGG  G GG  G GG+ GR
Sbjct: 321 FMRGGGSGGGRRGRGGYRGRGGFQGR 346


>gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]
          Length = 592

 Score =  114 bits (286), Expect = 1e-25
 Identities = 107/328 (32%), Positives = 132/328 (40%), Gaps = 95/328 (28%)

Query: 102 LFVGGIKEDTEEHHLRDYFEEYGKIDT--------IEIITDRQSGKKRGFGFVTFDDHDP 153
           +FV G+ E      + ++F++ G I T        I + TD+ +GK +G   V+FDD  P
Sbjct: 236 IFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTGKPKGEATVSFDD-PP 294

Query: 154 VDKIVLQKYH--TINGHNAEVRKALSRQEMQEVQSS---RSGRGGNFGFGDSRGGGG--- 205
             K  +  +     +G+  +V  A  R E      S   R GRGG  G G  +G GG   
Sbjct: 295 SAKAAIDWFDGKEFHGNIIKVSFATRRPEFMRGGGSGGGRRGRGGYRGRGGFQGRGGDPK 354

Query: 206 --------------NFG----------PGP------GSNFRG------------------ 217
                         NF           P P      G +FRG                  
Sbjct: 355 SGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPSGGDFRGRGYGGERGYRGRGGRGGD 414

Query: 218 ----GSD----GYGSGRGFGDGYNG------YGGGPGGGNFGGSPG----------YGGG 253
               G D    GYG  R  G GY+G      YGG   GG +GG  G          YGG 
Sbjct: 415 RGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDRGGGYGGDRGGGYGGD 474

Query: 254 RGG-YGGGGPGY-GNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKS-GNFG 310
           RGG YGG   GY G++GGGYGG    YGG   G G   D G Y      YG  +S G +G
Sbjct: 475 RGGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGGYG--GDRGGYGGDRGGYGGDRSRGGYG 532

Query: 311 GSRNMGGPYGGGNYGP-GGSGGSGGYGG 337
           G R  G  YGG   G  GG    GGYGG
Sbjct: 533 GDRGGGSGYGGDRSGGYGGDRSGGGYGG 560



 Score =  114 bits (286), Expect = 1e-25
 Identities = 70/156 (44%), Positives = 77/156 (49%), Gaps = 12/156 (7%)

Query: 192 GGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNG-----YGGGPGGGNFGG 246
           GG +G GD   GGG  G   G  + G   G G G   G GY G     YGG  GGG  G 
Sbjct: 424 GGGYG-GDRSSGGGYSGDRSGGGYGGDRSGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGD 482

Query: 247 SPGYGGGR-GGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQ---PSNYG 302
             GYGG R GGYGG   GYG   GGYGG    YGG   G G     G Y       S YG
Sbjct: 483 RGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYG 542

Query: 303 PMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGR 338
             +SG +GG R+ GG   GG+ G G  G  GGYGG+
Sbjct: 543 GDRSGGYGGDRSGGG--YGGDRGGGYGGDRGGYGGK 576



 Score = 79.0 bits (193), Expect = 6e-15
 Identities = 52/114 (45%), Positives = 62/114 (54%), Gaps = 17/114 (14%)

Query: 191 RGGNFG-----FGDSRGGGGNFGPGPGSNFRGGSDGYGSGR-GFGDGYNGYGG----GPG 240
           RGG +G     +G  RGGG  +G G    + G   GYG  R G+G    GYGG    G  
Sbjct: 475 RGGGYGGDRGGYGGDRGGG--YG-GDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGY 531

Query: 241 GGNFGGSPGYGGGR-GGYGG--GGPGY-GNQGGGYGGGYDNYGGGNYGSGNYND 290
           GG+ GG  GYGG R GGYGG   G GY G++GGGYGG    YGG   G  +Y +
Sbjct: 532 GGDRGGGSGYGGDRSGGYGGDRSGGGYGGDRGGGYGGDRGGYGGKMGGRNDYRN 585



 Score = 56.2 bits (134), Expect = 4e-08
 Identities = 46/175 (26%), Positives = 64/175 (36%), Gaps = 27/175 (15%)

Query: 187 SRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGG----- 241
           S  G  G+ G+G +      +G    S++     GY S   +G   +GY    GG     
Sbjct: 18  STYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSS---YGQSQSGYSQSYGGYENQK 74

Query: 242 -GNFGGSPGYGGGR-------GGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGN 293
             ++   P    G+       G  GG  P Y     G    YD   G +   G+Y++  N
Sbjct: 75  QSSYSQQPYNNQGQQQNMESSGSQGGRAPSYDQPDYGQQDSYDQQSGYDQHQGSYDEQSN 134

Query: 294 YNQQPSNYGPMKSGNFGGSRNMG----------GPYGGGNYGPGGS-GGSGGYGG 337
           Y+QQ  +Y   +        N              YG  N G GGS GG  G GG
Sbjct: 135 YDQQHDSYSQNQQSYHSQRENYSHHTQDDRRDVSRYGEDNRGYGGSQGGGRGRGG 189



 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 40/128 (31%), Positives = 49/128 (38%), Gaps = 14/128 (10%)

Query: 219 SDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNY 278
           S  YG   G    Y+ YG         GS GYG     Y G G    +  G    GY +Y
Sbjct: 4   SGSYGQSGGEQQSYSTYGN-------PGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSY 56

Query: 279 GGGNYGSGNYNDFGNY-NQQPSNYGPMKSGNFGGSRNM--GGPYGG--GNYGPGGSGGSG 333
           G     SG    +G Y NQ+ S+Y      N G  +NM   G  GG   +Y     G   
Sbjct: 57  GQSQ--SGYSQSYGGYENQKQSSYSQQPYNNQGQQQNMESSGSQGGRAPSYDQPDYGQQD 114

Query: 334 GYGGRSRY 341
            Y  +S Y
Sbjct: 115 SYDQQSGY 122



 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 24/55 (43%), Positives = 29/55 (52%), Gaps = 12/55 (21%)

Query: 228 FGDGYNGYGGGPGGGNFGGSPGYGGGRGGY--GGGGPGYGNQGGGYGGGYDNYGG 280
           +G+   GYGG  GGG          GRGGY   G GP  G+ GG   GG+ N+GG
Sbjct: 170 YGEDNRGYGGSQGGGR---------GRGGYDKDGRGPMTGSSGGD-RGGFKNFGG 214



 Score = 33.9 bits (76), Expect = 0.22
 Identities = 65/266 (24%), Positives = 88/266 (33%), Gaps = 74/266 (27%)

Query: 122 EYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV------LQKYHTINGHNAEVRKA 175
           +YG+ D+     D+QSG  +  G  ++D+    D+         Q YH+    N      
Sbjct: 109 DYGQQDSY----DQQSGYDQHQG--SYDEQSNYDQQHDSYSQNQQSYHS-QRENYSHHTQ 161

Query: 176 LSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGY 235
             R+++        G GG+ G G  RGG    G GP +   GG  G              
Sbjct: 162 DDRRDVSRYGEDNRGYGGSQGGGRGRGGYDKDGRGPMTGSSGGDRG-------------- 207

Query: 236 GGGPGGGNFGGSPGYGGGRGGYGGGGPGYGN----QGGGYGGGYDNYG---------GGN 282
               G  NFGG   YG              N    QG G G   D  G           N
Sbjct: 208 ----GFKNFGGHRDYGPRTDADSESDNSDNNTIFVQGLGEGVSTDQVGEFFKQIGIIKTN 263

Query: 283 YGSGN-----YNDFG----------NYNQQPSN------------YGPMKSGNFGGSR-- 313
             +G      Y D            +++  PS             +G +   +F   R  
Sbjct: 264 KKTGKPMINLYTDKDTGKPKGEATVSFDDPPSAKAAIDWFDGKEFHGNIIKVSFATRRPE 323

Query: 314 -NMGGPYGGGNYGPGGSGGSGGYGGR 338
              GG  GGG  G GG  G GG+ GR
Sbjct: 324 FMRGGGSGGGRRGRGGYRGRGGFQGR 349


>gi|6678271 TAR DNA binding protein [Homo sapiens]
          Length = 414

 Score =  109 bits (272), Expect = 4e-24
 Identities = 91/329 (27%), Positives = 141/329 (42%), Gaps = 68/329 (20%)

Query: 1   MEREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSM 60
           ++R  ++   L + GL ++TTE+ L+ Y+  +G++    V +D  +  S+GFGFV F+  
Sbjct: 96  VKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEY 155

Query: 61  AEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF 120
            E    + ++ H IDGR  + K   +++   +P   +  +K+FVG   ED  E  LR++F
Sbjct: 156 -ETQVKVMSQRHMIDGRWCDCKLPNSKQSQDEP---LRSRKVFVGRCTEDMTEDELREFF 211

Query: 121 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQE 180
            +YG  D +++   +     R F FVTF D D + + +  +   I G +  +  A  +  
Sbjct: 212 SQYG--DVMDVFIPKPF---RAFAFVTFAD-DQIAQSLCGEDLIIKGISVHISNAEPKHN 265

Query: 181 MQEVQSSRSGR-GGN-------FGFGDSRGGGGNFGPGPGSNFRGGSD------------ 220
               Q  RSGR GGN        GFG+SRGGG   G   GSN  GG +            
Sbjct: 266 SNR-QLERSGRFGGNPGGFGNQGGFGNSRGGGAGLGNNQGSNMGGGMNFGAFSINPAMMA 324

Query: 221 --------------------------GYGSGRG---------FGDGYNGYGGGPGGG--N 243
                                     G    +G         FG G N Y G   G    
Sbjct: 325 AAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQREPNQAFGSGNNSYSGSNSGAAIG 384

Query: 244 FGGSPGYGGGRGGYGGGGPGYGNQGGGYG 272
           +G +   G G G  GG G    ++  G+G
Sbjct: 385 WGSASNAGSGSGFNGGFGSSMDSKSSGWG 413


>gi|55956899 keratin 9 [Homo sapiens]
          Length = 623

 Score =  107 bits (266), Expect = 2e-23
 Identities = 64/156 (41%), Positives = 75/156 (48%), Gaps = 13/156 (8%)

Query: 188 RSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNG-YGGGPGGGNFGG 246
           R G GG++G G   G GG++G G      G   GYG G G   G  G YGGG G G  G 
Sbjct: 478 RGGSGGSYGRGSRGGSGGSYGGG------GSGGGYGGGSGSRGGSGGSYGGGSGSGG-GS 530

Query: 247 SPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGN-YGSGNYNDFGNYNQQPSNYGPMK 305
             GYGGG GG   GG G G+ GG  G    NYGGG+  G G+   +G  +      G   
Sbjct: 531 GGGYGGGSGGGHSGGSGGGHSGGSGG----NYGGGSGSGGGSGGGYGGGSGSRGGSGGSH 586

Query: 306 SGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRSRY 341
            G  G     GG YGGG    G  GG GG  G+S +
Sbjct: 587 GGGSGFGGESGGSYGGGEEASGSGGGYGGGSGKSSH 622



 Score = 87.8 bits (216), Expect = 1e-17
 Identities = 61/146 (41%), Positives = 67/146 (45%), Gaps = 21/146 (14%)

Query: 192 GGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYG 251
           GG   F  S  G G  G G     RGGS G             YG G  GG+ GGS G G
Sbjct: 460 GGQEDFESS--GAGKIGLGG----RGGSGG------------SYGRGSRGGS-GGSYGGG 500

Query: 252 GGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGG 311
           G  GGYGGG    G  GG YGGG  + GG   G G  +  G+       +     GN+GG
Sbjct: 501 GSGGGYGGGSGSRGGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGG 560

Query: 312 SRNMGGPYGGGNYGPGGSGGSGGYGG 337
               GG  GGG YG GGSG  GG GG
Sbjct: 561 GSGSGGGSGGG-YG-GGSGSRGGSGG 584



 Score = 85.1 bits (209), Expect = 8e-17
 Identities = 47/101 (46%), Positives = 54/101 (53%), Gaps = 6/101 (5%)

Query: 186 SSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFG 245
           SS SG GG       RGGGG+FG   G    GG      G GFG G  G+GG  GGG + 
Sbjct: 48  SSSSGYGGGSSRVCGRGGGGSFGYSYGGGSGGGFSASSLGGGFGGGSRGFGGASGGG-YS 106

Query: 246 GSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSG 286
            S G+GGG GG  GGG      GGGYG G+  +GG   G+G
Sbjct: 107 SSGGFGGGFGGGSGGG-----FGGGYGSGFGGFGGFGGGAG 142



 Score = 82.8 bits (203), Expect = 4e-16
 Identities = 49/128 (38%), Positives = 60/128 (46%), Gaps = 18/128 (14%)

Query: 217 GGSDGYGSGRGFGDGYNGY---GGGPGGGNFGGSPGYGGGRG---GYGGGGPGYGNQGGG 270
           GG  G GSG      Y+ +   GGG GGG F  S GYGGG     G GGGG    + GGG
Sbjct: 17  GGGGGLGSGGSIRSSYSRFSSSGGGGGGGRFSSSSGYGGGSSRVCGRGGGGSFGYSYGGG 76

Query: 271 YGGGYDNYG-GGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGS 329
            GGG+     GG +G G+             +G    G +  S   GG +GGG+ G  G 
Sbjct: 77  SGGGFSASSLGGGFGGGS-----------RGFGGASGGGYSSSGGFGGGFGGGSGGGFGG 125

Query: 330 GGSGGYGG 337
           G   G+GG
Sbjct: 126 GYGSGFGG 133



 Score = 80.9 bits (198), Expect = 2e-15
 Identities = 61/165 (36%), Positives = 72/165 (43%), Gaps = 33/165 (20%)

Query: 176 LSRQEMQEVQSSRSGRGGNFGFGD------------SRGGGGNFGPGPGSNFRGGSDGYG 223
           +S ++      SRSG GG  G G             S GGGG  G    S+  GG     
Sbjct: 1   MSCRQFSSSYLSRSGGGGGGGLGSGGSIRSSYSRFSSSGGGGGGGRFSSSSGYGGGSSRV 60

Query: 224 SGRGFGDGYN-GYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYG--G 280
            GRG G  +   YGGG GGG    S G     GG+GGG  G+   GG  GGGY + G  G
Sbjct: 61  CGRGGGGSFGYSYGGGSGGGFSASSLG-----GGFGGGSRGF---GGASGGGYSSSGGFG 112

Query: 281 GNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYG 325
           G +G G+   FG        YG      FGG    GG  GGG+ G
Sbjct: 113 GGFGGGSGGGFG------GGYG----SGFGGFGGFGGGAGGGDGG 147



 Score = 80.1 bits (196), Expect = 3e-15
 Identities = 52/112 (46%), Positives = 60/112 (53%), Gaps = 17/112 (15%)

Query: 187 SRSGRGGNFGFGDSRGGG--GNFGPGPGSNFRGGSDGYGSGR-------GFGDGYNGYGG 237
           SR G GG++G G   GGG  G +G G G    GGS G  SG        G G G  G GG
Sbjct: 512 SRGGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGG-GSGG 570

Query: 238 GPGGGNFGGSPGYGGGRGGYGGGGPGYGNQ-GGGYGGGYDNYG-GGNYGSGN 287
           G GGG+     G  GG GG  GGG G+G + GG YGGG +  G GG YG G+
Sbjct: 571 GYGGGS-----GSRGGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGS 617



 Score = 63.2 bits (152), Expect = 3e-10
 Identities = 45/104 (43%), Positives = 53/104 (50%), Gaps = 19/104 (18%)

Query: 252 GGRGGYGGGGPGYGNQ------------GGGYGGGYDNYG--GGNYGSGNYNDFGNYNQQ 297
           GGRGG  GG  G G++            GGGYGGG  + G  GG+YG G+ +  G+    
Sbjct: 476 GGRGG-SGGSYGRGSRGGSGGSYGGGGSGGGYGGGSGSRGGSGGSYGGGSGSGGGSGGGY 534

Query: 298 PSNYGPMKSGNFGG--SRNMGGPYGGGNYGPGGSGGSGGYGGRS 339
               G   SG  GG  S   GG YGGG+   GGSG  GGYGG S
Sbjct: 535 GGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSG--GGYGGGS 576



 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 41/119 (34%), Positives = 48/119 (40%), Gaps = 27/119 (22%)

Query: 224 SGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNY 283
           S R F   Y    GG GGG  G     G  R  Y      + + GGG GGG  +   G Y
Sbjct: 2   SCRQFSSSYLSRSGGGGGGGLGSG---GSIRSSYSR----FSSSGGGGGGGRFSSSSG-Y 53

Query: 284 GSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGS--GGYGGRSR 340
           G G+    G                 GG  + G  YGGG+ G G S  S  GG+GG SR
Sbjct: 54  GGGSSRVCGR----------------GGGGSFGYSYGGGS-GGGFSASSLGGGFGGGSR 95



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 34/101 (33%), Positives = 37/101 (36%), Gaps = 43/101 (42%)

Query: 251 GGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFG 310
           G G+ G GG G      GG YG G     GG+YG G                        
Sbjct: 469 GAGKIGLGGRG----GSGGSYGRGSRGGSGGSYGGGG----------------------- 501

Query: 311 GSRNMGGPYGGGNYGPGGSGGS------------GGYGGRS 339
                GG YGGG+   GGSGGS            GGYGG S
Sbjct: 502 ----SGGGYGGGSGSRGGSGGSYGGGSGSGGGSGGGYGGGS 538



 Score = 33.1 bits (74), Expect = 0.37
 Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 11/59 (18%)

Query: 287 NYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYG-------GGNYGPGGSGGS-GGYGG 337
           N  + G  + + S  G +  G  GGS   GG YG       GG+YG GGSGG  GG  G
Sbjct: 456 NLLEGGQEDFESSGAGKIGLGGRGGS---GGSYGRGSRGGSGGSYGGGGSGGGYGGGSG 511


>gi|55956788 nucleolin [Homo sapiens]
          Length = 710

 Score =  101 bits (252), Expect = 8e-22
 Identities = 81/256 (31%), Positives = 119/256 (46%), Gaps = 41/256 (16%)

Query: 9   RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM- 67
           + L +  LS+  TEE+L+  +E   K T   V ++   K S+G+ F+ F+S  +   A+ 
Sbjct: 486 KTLVLSNLSYSATEETLQEVFE---KATFIKVPQNQNGK-SKGYAFIEFASFEDAKEALN 541

Query: 68  AARPHSIDGRVVEPKRAVAREESGKPGAHVTVKK-LFVGGIKEDTEEHHLRDYFEEYGKI 126
           +     I+GR +   R   +   G P A     K LFV G+ EDT E  L++ F+  G +
Sbjct: 542 SCNKREIEGRAI---RLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSV 596

Query: 127 DTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQS 186
               I+TDR++G  +GFGFV F+  +                  + + A    E  E+  
Sbjct: 597 RA-RIVTDRETGSSKGFGFVDFNSEE------------------DAKAAKEAMEDGEIDG 637

Query: 187 SRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGG 246
           ++        +   +G GG  G G G   RGG  G G GRG   G+    GG G G FGG
Sbjct: 638 NKV----TLDWAKPKGEGGFGGRGGG---RGGFGGRGGGRGGRGGF----GGRGRGGFGG 686

Query: 247 SPGYGGGRGGYGGGGP 262
             G+ GGRGG G   P
Sbjct: 687 RGGFRGGRGGGGDHKP 702



 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 74/330 (22%), Positives = 124/330 (37%), Gaps = 48/330 (14%)

Query: 3   REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 62
           +++   R L    L ++ T++ L+  +E   ++   +V +D  SK   G  ++ F + A+
Sbjct: 387 KKERDARTLLAKNLPYKVTQDELKEVFEDAAEIR--LVSKDGKSK---GIAYIEFKTEAD 441

Query: 63  VDAAMAARPHS-IDGRVVEPKRA--VAREESGKPGAHVT----VKKLFVGGIKEDTEEHH 115
            +     +  + IDGR +         + +  + G + T     K L +  +     E  
Sbjct: 442 AEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEET 501

Query: 116 LRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK--------------IVLQK 161
           L++ FE+     T   +   Q+GK +G+ F+ F   +   +              I L+ 
Sbjct: 502 LQEVFEKA----TFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 557

Query: 162 YHTINGHNAEVR-------KALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSN 214
                  NA  +       K LS    +E                 R  G + G G   +
Sbjct: 558 QGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFG-FVD 616

Query: 215 FRGGSDGYGSGRGFGDG-YNG------YGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQ 267
           F    D   +     DG  +G      +    G G FGG    GGGRGG+GG G G G +
Sbjct: 617 FNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGR---GGGRGGFGGRGGGRGGR 673

Query: 268 GGGYGGGYDNYGGGNYGSGNYNDFGNYNQQ 297
           GG  G G   +GG     G     G++  Q
Sbjct: 674 GGFGGRGRGGFGGRGGFRGGRGGGGDHKPQ 703



 Score = 36.2 bits (82), Expect = 0.043
 Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 3/38 (7%)

Query: 303 PMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRSR 340
           P   G FGG     G +GG     GG GG GG+GGR R
Sbjct: 647 PKGEGGFGGRGGGRGGFGGRG---GGRGGRGGFGGRGR 681



 Score = 33.9 bits (76), Expect = 0.22
 Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 307 GNFGGSRNMGGPYGGGNYGPGGSG--GSGGYGGRSRY 341
           G  GG R   G  GGG  G GG G  G GG+GGR  +
Sbjct: 654 GGRGGGRGGFGGRGGGRGGRGGFGGRGRGGFGGRGGF 690


>gi|109452587 family with sequence similarity 98, member B isoform 1
           [Homo sapiens]
          Length = 433

 Score =  100 bits (248), Expect = 2e-21
 Identities = 59/113 (52%), Positives = 67/113 (59%), Gaps = 11/113 (9%)

Query: 229 GDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNY 288
           G G  G+GGG GGG  GG  G GGGRGG+GGGG G+G  GGG GGG+   GGG  G G +
Sbjct: 332 GGGRGGWGGGGGGGGRGGGGG-GGGRGGWGGGGGGWGGGGGG-GGGWGGGGGG--GRGGF 387

Query: 289 NDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRSRY 341
              G+Y  +   YG    G +GG R  G PYGGG    GG GG GG GG  RY
Sbjct: 388 QGRGDYGGR-GGYGGR--GGYGG-RGYGDPYGGGG---GGGGGGGGGGGYRRY 433



 Score = 99.8 bits (247), Expect = 3e-21
 Identities = 56/113 (49%), Positives = 61/113 (53%), Gaps = 14/113 (12%)

Query: 223 GSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGN 282
           G GRG   G  G GG  GGG  GG  G+GGG GG+GGGG G G  GGG GGG     GG 
Sbjct: 332 GGGRGGWGGGGGGGGRGGGGGGGGRGGWGGGGGGWGGGGGGGGGWGGGGGGG----RGGF 387

Query: 283 YGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGY 335
            G G+Y   G Y  +         G +GG R  G PYGGG  G GG GG GGY
Sbjct: 388 QGRGDYGGRGGYGGR---------GGYGG-RGYGDPYGGGGGGGGGGGGGGGY 430



 Score = 91.3 bits (225), Expect = 1e-18
 Identities = 56/119 (47%), Positives = 63/119 (52%), Gaps = 13/119 (10%)

Query: 180 EMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSN---FRGGSDGYGSGRGFGDGYNGYG 236
           EM   Q  + G GG  G+G   GGGG  G G G     + GG  G+G G G G G+ G G
Sbjct: 321 EMPPWQKRQEGGGGRGGWGGGGGGGGRGGGGGGGGRGGWGGGGGGWGGGGGGGGGWGG-G 379

Query: 237 GGPGGGNFGGSPGYGGGRGGYGG----GGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDF 291
           GG G G F G   Y GGRGGYGG    GG GYG+  GG GGG    GGG  G G Y  +
Sbjct: 380 GGGGRGGFQGRGDY-GGRGGYGGRGGYGGRGYGDPYGGGGGG----GGGGGGGGGYRRY 433



 Score = 33.9 bits (76), Expect = 0.22
 Identities = 17/40 (42%), Positives = 18/40 (45%)

Query: 298 PSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGG 337
           P    P +    GG    G   GGG  G GG GG GG GG
Sbjct: 319 PPEMPPWQKRQEGGGGRGGWGGGGGGGGRGGGGGGGGRGG 358


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.142    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,477,134
Number of Sequences: 37866
Number of extensions: 1212303
Number of successful extensions: 36132
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 330
Number of HSP's that attempted gapping in prelim test: 6597
Number of HSP's gapped (non-prelim): 9784
length of query: 341
length of database: 18,247,518
effective HSP length: 103
effective length of query: 238
effective length of database: 14,347,320
effective search space: 3414662160
effective search space used: 3414662160
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.