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Search of human proteins with 4504425
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4504425 high-mobility group box 1 [Homo sapiens]
(215 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4504425 high-mobility group box 1 [Homo sapiens] 447 e-126
gi|56806673 high-mobility group box 1-like 1 [Homo sapiens] 412 e-115
gi|194688135 high-mobility group box 2 [Homo sapiens] 362 e-100
gi|194688133 high-mobility group box 2 [Homo sapiens] 362 e-100
gi|11321591 high-mobility group box 2 [Homo sapiens] 362 e-100
gi|169202818 PREDICTED: similar to hCG1991922 [Homo sapiens] 329 1e-90
gi|239749996 PREDICTED: similar to hCG1991922 [Homo sapiens] 329 1e-90
gi|239744307 PREDICTED: similar to hCG1991922 [Homo sapiens] 322 1e-88
gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens] 321 3e-88
gi|71143137 high-mobility group box 3 [Homo sapiens] 311 3e-85
gi|113421073 PREDICTED: similar to high mobility group box 3 [Ho... 283 6e-77
gi|113420668 PREDICTED: similar to high mobility group box 3 [Ho... 283 6e-77
gi|169184027 PREDICTED: similar to high mobility group box 3 [Ho... 283 8e-77
gi|169212060 PREDICTED: high mobility group protein B3-like prot... 268 3e-72
gi|239745831 PREDICTED: high mobility group protein B3-like prot... 268 3e-72
gi|169217198 PREDICTED: similar to hCG1644442 [Homo sapiens] 259 2e-69
gi|169216377 PREDICTED: similar to hCG1644442 [Homo sapiens] 259 2e-69
gi|169216609 PREDICTED: hypothetical protein LOC203510 [Homo sap... 259 2e-69
gi|169168462 PREDICTED: similar to high mobility group box 3 [Ho... 251 3e-67
gi|169168166 PREDICTED: similar to high mobility group box 3 [Ho... 251 3e-67
gi|113416897 PREDICTED: similar to high mobility group box 3 iso... 251 3e-67
gi|239752318 PREDICTED: similar to hCG1647425 [Homo sapiens] 196 1e-50
gi|239746826 PREDICTED: similar to hCG1647425 [Homo sapiens] 196 1e-50
gi|239742753 PREDICTED: similar to high mobility group box 3 iso... 194 5e-50
gi|239757817 PREDICTED: similar to hCG1647425 [Homo sapiens] 168 4e-42
gi|57232750 HMG2 like isoform 1 [Homo sapiens] 151 5e-37
gi|4507241 structure specific recognition protein 1 [Homo sapiens] 93 1e-19
gi|115529449 upstream binding transcription factor, RNA polymera... 81 6e-16
gi|115529451 upstream binding transcription factor, RNA polymera... 81 6e-16
gi|7657671 upstream binding transcription factor, RNA polymerase... 81 6e-16
>gi|4504425 high-mobility group box 1 [Homo sapiens]
Length = 215
Score = 447 bits (1149), Expect = e-126
Identities = 215/215 (100%), Positives = 215/215 (100%)
Query: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
Sbjct: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
Query: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 180
SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK
Sbjct: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 180
Query: 181 SKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE 215
SKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE
Sbjct: 181 SKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE 215
>gi|56806673 high-mobility group box 1-like 1 [Homo sapiens]
Length = 211
Score = 412 bits (1058), Expect = e-115
Identities = 200/215 (93%), Positives = 205/215 (95%), Gaps = 4/215 (1%)
Query: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
MGKGDPKKPRGKMSSYAFFVQTCREEHKKKH DASVNFSEFS KCSERWKTMSAKEKGKF
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHSDASVNFSEFSNKCSERWKTMSAKEKGKF 60
Query: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
EDMAKADK YER+MKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEY PKIKGEHPGL
Sbjct: 61 EDMAKADKTHYERQMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYHPKIKGEHPGL 120
Query: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 180
SIGDVAKKLGEMWNNTAADDKQP EKKAAKLKEKYEKDIAAY+AKGKP+AAKKGVVKAEK
Sbjct: 121 SIGDVAKKLGEMWNNTAADDKQPGEKKAAKLKEKYEKDIAAYQAKGKPEAAKKGVVKAEK 180
Query: 181 SKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE 215
SKKKKEEEEDEEDEEDEE EEDE++EEDDDDE
Sbjct: 181 SKKKKEEEEDEEDEEDEE----EEDEEDEEDDDDE 211
>gi|194688135 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 362 bits (929), Expect = e-100
Identities = 170/209 (81%), Positives = 189/209 (90%)
Query: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
MGKGDP KPRGKMSSYAFFVQTCREEHKKKHPD+SVNF+EFSKKCSERWKTMSAKEK KF
Sbjct: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
Query: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
EDMAK+DKARY+REMK Y+PPKG+ K K KDPNAPKRPPSAFFLFCSE+RPKIK EHPGL
Sbjct: 61 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
Query: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 180
SIGD AKKLGEMW+ +A DKQPYE+KAAKLKEKYEKDIAAYRAKGK +A KKG +
Sbjct: 121 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG 180
Query: 181 SKKKKEEEEDEEDEEDEEEEEDEEDEDEE 209
SKKK E E++EE+EE+E+E+E+EEDEDEE
Sbjct: 181 SKKKNEPEDEEEEEEEEDEDEEEEDEDEE 209
>gi|194688133 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 362 bits (929), Expect = e-100
Identities = 170/209 (81%), Positives = 189/209 (90%)
Query: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
MGKGDP KPRGKMSSYAFFVQTCREEHKKKHPD+SVNF+EFSKKCSERWKTMSAKEK KF
Sbjct: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
Query: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
EDMAK+DKARY+REMK Y+PPKG+ K K KDPNAPKRPPSAFFLFCSE+RPKIK EHPGL
Sbjct: 61 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
Query: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 180
SIGD AKKLGEMW+ +A DKQPYE+KAAKLKEKYEKDIAAYRAKGK +A KKG +
Sbjct: 121 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG 180
Query: 181 SKKKKEEEEDEEDEEDEEEEEDEEDEDEE 209
SKKK E E++EE+EE+E+E+E+EEDEDEE
Sbjct: 181 SKKKNEPEDEEEEEEEEDEDEEEEDEDEE 209
>gi|11321591 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 362 bits (929), Expect = e-100
Identities = 170/209 (81%), Positives = 189/209 (90%)
Query: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
MGKGDP KPRGKMSSYAFFVQTCREEHKKKHPD+SVNF+EFSKKCSERWKTMSAKEK KF
Sbjct: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
Query: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
EDMAK+DKARY+REMK Y+PPKG+ K K KDPNAPKRPPSAFFLFCSE+RPKIK EHPGL
Sbjct: 61 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
Query: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 180
SIGD AKKLGEMW+ +A DKQPYE+KAAKLKEKYEKDIAAYRAKGK +A KKG +
Sbjct: 121 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG 180
Query: 181 SKKKKEEEEDEEDEEDEEEEEDEEDEDEE 209
SKKK E E++EE+EE+E+E+E+EEDEDEE
Sbjct: 181 SKKKNEPEDEEEEEEEEDEDEEEEDEDEE 209
>gi|169202818 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 488
Score = 329 bits (843), Expect = 1e-90
Identities = 162/188 (86%), Positives = 171/188 (90%), Gaps = 7/188 (3%)
Query: 35 SVNFSEFSKKCSERWKTMSAKEKGKF-------EDMAKADKARYEREMKTYIPPKGETKK 87
SVNFSEFSKKCSERWK MSAKEKGKF EDMAKADKA Y+REMKTYIPPKGETKK
Sbjct: 164 SVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKK 223
Query: 88 KFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKK 147
KFKDPNAPKRPPSAFFL+ SEY PKIKGE PGLS GDVAKKLGEMWNNTAADDKQPYEK+
Sbjct: 224 KFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKR 283
Query: 148 AAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEEDED 207
+AKLKEKYEKDIAAYRAKGK DAA GVVKA KSKKKKEEEE+EEDEEDEEEE+DEEDED
Sbjct: 284 SAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEEDED 343
Query: 208 EEEDDDDE 215
EE+D+D+E
Sbjct: 344 EEDDEDEE 351
Score = 67.4 bits (163), Expect = 9e-12
Identities = 55/211 (26%), Positives = 84/211 (39%), Gaps = 80/211 (37%)
Query: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
DP P+ S AFF+ K K ++F + +KK E W +A +K +E +
Sbjct: 227 DPNAPKRPPS--AFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRS 284
Query: 65 KADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGD 124
K +YE+++ Y + KG+H + G
Sbjct: 285 AKLKEKYEKDIAAY---------------------------------RAKGKHDAANNGV 311
Query: 125 VAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKK 184
V KAAK K+K E++ +
Sbjct: 312 V---------------------KAAKSKKKKEEE------------------------EN 326
Query: 185 KEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE 215
+E+EEDEE+E+DEE+E++E+DEDEEED DDE
Sbjct: 327 EEDEEDEEEEKDEEDEDEEDDEDEEEDGDDE 357
>gi|239749996 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 487
Score = 329 bits (843), Expect = 1e-90
Identities = 162/188 (86%), Positives = 171/188 (90%), Gaps = 7/188 (3%)
Query: 35 SVNFSEFSKKCSERWKTMSAKEKGKF-------EDMAKADKARYEREMKTYIPPKGETKK 87
SVNFSEFSKKCSERWK MSAKEKGKF EDMAKADKA Y+REMKTYIPPKGETKK
Sbjct: 164 SVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKK 223
Query: 88 KFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKK 147
KFKDPNAPKRPPSAFFL+ SEY PKIKGE PGLS GDVAKKLGEMWNNTAADDKQPYEK+
Sbjct: 224 KFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKR 283
Query: 148 AAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEEDED 207
+AKLKEKYEKDIAAYRAKGK DAA GVVKA KSKKKKEEEE+EEDEEDEEEE+DEEDED
Sbjct: 284 SAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEEDED 343
Query: 208 EEEDDDDE 215
EE+D+D+E
Sbjct: 344 EEDDEDEE 351
>gi|239744307 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 486
Score = 322 bits (826), Expect = 1e-88
Identities = 161/188 (85%), Positives = 170/188 (90%), Gaps = 8/188 (4%)
Query: 35 SVNFSEFSKKCSERWKTMSAKEKGKF-------EDMAKADKARYEREMKTYIPPKGETKK 87
SVNFSEFSKKCSERWK MSAKEKGKF EDMAKADKA Y+REMKTYIPPKGETKK
Sbjct: 164 SVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKK 223
Query: 88 KFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKK 147
KFKDPNAPKRPPSAFFL+ SEY PKIKGE PGLS GDVAKKLGEMWNNTAADDKQPYEK+
Sbjct: 224 KFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKR 283
Query: 148 AAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEEDED 207
+AKLKEKYEKDIAAYRAKGK DAA GVVKA KSKKKKEEEE+EEDEEDEEEE+D EDED
Sbjct: 284 SAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKD-EDED 342
Query: 208 EEEDDDDE 215
EE+D+D+E
Sbjct: 343 EEDDEDEE 350
Score = 61.2 bits (147), Expect = 6e-10
Identities = 55/212 (25%), Positives = 82/212 (38%), Gaps = 84/212 (39%)
Query: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
DP P+ S AFF+ K K ++F + +KK E W +A +K +E +
Sbjct: 227 DPNAPKRPPS--AFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRS 284
Query: 65 KADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGD 124
K +YE+++ Y + KG+H + G
Sbjct: 285 AKLKEKYEKDIAAY---------------------------------RAKGKHDAANNGV 311
Query: 125 VAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKK 184
V KAAK K+K K++
Sbjct: 312 V---------------------KAAKSKKK---------------------------KEE 323
Query: 185 KEEEEDEEDEEDE-EEEEDEEDEDEEEDDDDE 215
+E EEDEEDEE+E +E+EDEED+++EED DDE
Sbjct: 324 EENEEDEEDEEEEKDEDEDEEDDEDEEDGDDE 355
>gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens]
Length = 879
Score = 321 bits (823), Expect = 3e-88
Identities = 156/180 (86%), Positives = 165/180 (91%)
Query: 25 EEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE 84
EEHKKK+PDASV FSEF KKCSE WKT+ AKEKGKFEDMAKADKA YEREMKTYIPPKGE
Sbjct: 699 EEHKKKNPDASVKFSEFLKKCSETWKTIFAKEKGKFEDMAKADKAHYEREMKTYIPPKGE 758
Query: 85 TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPY 144
KKKFKDPNAPKRPP AFFLFCSEYRPKIKGEHPGLSI DV KKL MWNNTAA DKQ Y
Sbjct: 759 KKKKFKDPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAGMWNNTAAADKQFY 818
Query: 145 EKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEE 204
EKKAAKLKEKY+KDIAAYRAKGKP++AKK VVKAEKSKKKKEEEEDEEDE++EE EED++
Sbjct: 819 EKKAAKLKEKYKKDIAAYRAKGKPNSAKKRVVKAEKSKKKKEEEEDEEDEQEEENEEDDD 878
Score = 37.0 bits (84), Expect = 0.013
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
DP P+ ++ F R + K +HP S++ + KK + W +A +K +E A
Sbjct: 765 DPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSID--DVVKKLAGMWNNTAAADKQFYEKKA 822
Query: 65 KADKARYEREMKTYIPPKGETKKKFKDPNAPKR 97
K +Y++++ Y + K K +A KR
Sbjct: 823 AKLKEKYKKDIAAY-------RAKGKPNSAKKR 848
>gi|71143137 high-mobility group box 3 [Homo sapiens]
Length = 200
Score = 311 bits (796), Expect = 3e-85
Identities = 152/206 (73%), Positives = 171/206 (83%), Gaps = 6/206 (2%)
Query: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
M KGDPKKP+GKMS+YAFFVQTCREEHKKK+P+ VNF+EFSKKCSERWKTMS KEK KF
Sbjct: 1 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKF 60
Query: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
++MAKADK RY+REMK Y P KG KKK DPNAPKRPPS FFLFCSE+RPKIK +PG+
Sbjct: 61 DEMAKADKVRYDREMKDYGPAKGGKKKK--DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
Query: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 180
SIGDVAKKLGEMWNN +KQPY KAAKLKEKYEKD+A Y++KGK D AK K
Sbjct: 119 SIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADYKSKGKFDGAK----GPAK 174
Query: 181 SKKKKEEEEDEEDEEDEEEEEDEEDE 206
+KK EEEDEE+EE+EEEEE+EEDE
Sbjct: 175 VARKKVEEEDEEEEEEEEEEEEEEDE 200
>gi|113421073 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 208
Score = 283 bits (725), Expect = 6e-77
Identities = 142/206 (68%), Positives = 163/206 (79%), Gaps = 7/206 (3%)
Query: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
M KGDPKKP+GKMS+YAF VQTC +EHKKK+P+ VNF+EFSKKCS RWKTMS+KEK KF
Sbjct: 1 MAKGDPKKPQGKMSAYAFSVQTCCKEHKKKNPEVPVNFAEFSKKCSGRWKTMSSKEKFKF 60
Query: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
+MAKAD+ Y+REMK Y P KG KK DPNAPKRPPS FFLFCSE+RPKIK +PG+
Sbjct: 61 GEMAKADEVCYDREMKDYGPAKGGKKK---DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 117
Query: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 180
SIGDVAKKLGEMWNN +KQPY KAAKLKEKYEKD+ + KGK AK + K
Sbjct: 118 SIGDVAKKLGEMWNNLNDSEKQPYVTKAAKLKEKYEKDVVDCKLKGKFYGAK----RPAK 173
Query: 181 SKKKKEEEEDEEDEEDEEEEEDEEDE 206
+KK EEEDEEDEE+EE+E+DEEDE
Sbjct: 174 VARKKVEEEDEEDEEEEEKEKDEEDE 199
>gi|113420668 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 208
Score = 283 bits (725), Expect = 6e-77
Identities = 142/206 (68%), Positives = 163/206 (79%), Gaps = 7/206 (3%)
Query: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
M KGDPKKP+GKMS+YAF VQTC +EHKKK+P+ VNF+EFSKKCS RWKTMS+KEK KF
Sbjct: 1 MAKGDPKKPQGKMSAYAFSVQTCCKEHKKKNPEVPVNFAEFSKKCSGRWKTMSSKEKFKF 60
Query: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
+MAKAD+ Y+REMK Y P KG KK DPNAPKRPPS FFLFCSE+RPKIK +PG+
Sbjct: 61 GEMAKADEVCYDREMKDYGPAKGGKKK---DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 117
Query: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 180
SIGDVAKKLGEMWNN +KQPY KAAKLKEKYEKD+ + KGK AK + K
Sbjct: 118 SIGDVAKKLGEMWNNLNDSEKQPYVTKAAKLKEKYEKDVVDCKLKGKFYGAK----RPAK 173
Query: 181 SKKKKEEEEDEEDEEDEEEEEDEEDE 206
+KK EEEDEEDEE+EE+E+DEEDE
Sbjct: 174 VARKKVEEEDEEDEEEEEKEKDEEDE 199
>gi|169184027 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 208
Score = 283 bits (724), Expect = 8e-77
Identities = 142/206 (68%), Positives = 163/206 (79%), Gaps = 7/206 (3%)
Query: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
M KGDPKKP+GKMS+YAF VQTC +EHKKK+P+ VNF+EFSKKCS RWKTMS+KEK KF
Sbjct: 1 MAKGDPKKPQGKMSAYAFSVQTCCKEHKKKNPEVLVNFAEFSKKCSGRWKTMSSKEKFKF 60
Query: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
+MAKAD+ Y+REMK Y P KG KK DPNAPKRPPS FFLFCSE+RPKIK +PG+
Sbjct: 61 GEMAKADEVCYDREMKDYGPAKGGKKK---DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 117
Query: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 180
SIGDVAKKLGEMWNN +KQPY KAAKLKEKYEKD+ + KGK AK + K
Sbjct: 118 SIGDVAKKLGEMWNNLNDSEKQPYVTKAAKLKEKYEKDVVDCKLKGKFYGAK----RPAK 173
Query: 181 SKKKKEEEEDEEDEEDEEEEEDEEDE 206
+KK EEEDEEDEE+EE+E+DEEDE
Sbjct: 174 VARKKVEEEDEEDEEEEEKEKDEEDE 199
>gi|169212060 PREDICTED: high mobility group protein B3-like
protein-like [Homo sapiens]
Length = 207
Score = 268 bits (684), Expect = 3e-72
Identities = 130/194 (67%), Positives = 151/194 (77%), Gaps = 7/194 (3%)
Query: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
M KGDPKKP+GKMS+YAFFVQTCREEHKKK+P +NF+EFSKKCSERWKTMS KEK KF
Sbjct: 1 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKF 60
Query: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
++AKADK Y++E+K Y P KG KK DPNAPKRPPS FFLFCSE+ PK K +PG+
Sbjct: 61 NELAKADKVHYDQEIKDYGPAKGGKKK---DPNAPKRPPSGFFLFCSEFCPKSKSTNPGI 117
Query: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 180
IGDVAKKLGEMW N +KQPY +AAKLKEKYEKD+A Y++KGK D AK K
Sbjct: 118 PIGDVAKKLGEMWKNLNDSEKQPYITQAAKLKEKYEKDVAVYKSKGKSDGAKGPA----K 173
Query: 181 SKKKKEEEEDEEDE 194
+KK EEEDE++E
Sbjct: 174 VAQKKVEEEDEDEE 187
>gi|239745831 PREDICTED: high mobility group protein B3-like
protein-like [Homo sapiens]
Length = 207
Score = 268 bits (684), Expect = 3e-72
Identities = 130/194 (67%), Positives = 151/194 (77%), Gaps = 7/194 (3%)
Query: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
M KGDPKKP+GKMS+YAFFVQTCREEHKKK+P +NF+EFSKKCSERWKTMS KEK KF
Sbjct: 1 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKF 60
Query: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
++AKADK Y++E+K Y P KG KK DPNAPKRPPS FFLFCSE+ PK K +PG+
Sbjct: 61 NELAKADKVHYDQEIKDYGPAKGGKKK---DPNAPKRPPSGFFLFCSEFCPKSKSTNPGI 117
Query: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 180
IGDVAKKLGEMW N +KQPY +AAKLKEKYEKD+A Y++KGK D AK K
Sbjct: 118 PIGDVAKKLGEMWKNLNDSEKQPYITQAAKLKEKYEKDVAVYKSKGKSDGAKGPA----K 173
Query: 181 SKKKKEEEEDEEDE 194
+KK EEEDE++E
Sbjct: 174 VAQKKVEEEDEDEE 187
>gi|169217198 PREDICTED: similar to hCG1644442 [Homo sapiens]
Length = 201
Score = 259 bits (661), Expect = 2e-69
Identities = 131/208 (62%), Positives = 160/208 (76%), Gaps = 7/208 (3%)
Query: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
M +GD KKP+GKMS+YAFF QTCREEHKKK+P+ VNF EFSKKCSE+ KTMS KEK KF
Sbjct: 1 MAEGDHKKPKGKMSAYAFFAQTCREEHKKKNPEVPVNFVEFSKKCSEKRKTMSGKEKTKF 60
Query: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
++MAK DK Y++EMK P +G KK DPNA KRP S FFLFCSE+ PKIK +PG+
Sbjct: 61 DEMAKVDKVHYDQEMKDNGPVEGGKKK---DPNALKRPLSGFFLFCSEFHPKIKSTNPGI 117
Query: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 180
SIGD+AKKLGEMW N + +KQPY KAA LKEKYEKD+A Y++KGK D+AK K
Sbjct: 118 SIGDMAKKLGEMWINYSDREKQPYITKAADLKEKYEKDVADYKSKGKFDSAK----GPTK 173
Query: 181 SKKKKEEEEDEEDEEDEEEEEDEEDEDE 208
KK +E+D+EDEE+EEEEE++++E E
Sbjct: 174 IAWKKVKEKDKEDEEEEEEEEEKKEEGE 201
>gi|169216377 PREDICTED: similar to hCG1644442 [Homo sapiens]
Length = 201
Score = 259 bits (661), Expect = 2e-69
Identities = 131/208 (62%), Positives = 160/208 (76%), Gaps = 7/208 (3%)
Query: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
M +GD KKP+GKMS+YAFF QTCREEHKKK+P+ VNF EFSKKCSE+ KTMS KEK KF
Sbjct: 1 MAEGDHKKPKGKMSAYAFFAQTCREEHKKKNPEVPVNFVEFSKKCSEKRKTMSGKEKTKF 60
Query: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
++MAK DK Y++EMK P +G KK DPNA KRP S FFLFCSE+ PKIK +PG+
Sbjct: 61 DEMAKVDKVHYDQEMKDNGPVEGGKKK---DPNALKRPLSGFFLFCSEFHPKIKSTNPGI 117
Query: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 180
SIGD+AKKLGEMW N + +KQPY KAA LKEKYEKD+A Y++KGK D+AK K
Sbjct: 118 SIGDMAKKLGEMWINYSDREKQPYITKAADLKEKYEKDVADYKSKGKFDSAK----GPTK 173
Query: 181 SKKKKEEEEDEEDEEDEEEEEDEEDEDE 208
KK +E+D+EDEE+EEEEE++++E E
Sbjct: 174 IAWKKVKEKDKEDEEEEEEEEEKKEEGE 201
>gi|169216609 PREDICTED: hypothetical protein LOC203510 [Homo
sapiens]
Length = 201
Score = 259 bits (661), Expect = 2e-69
Identities = 131/208 (62%), Positives = 160/208 (76%), Gaps = 7/208 (3%)
Query: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
M +GD KKP+GKMS+YAFF QTCREEHKKK+P+ VNF EFSKKCSE+ KTMS KEK KF
Sbjct: 1 MAEGDHKKPKGKMSAYAFFAQTCREEHKKKNPEVPVNFVEFSKKCSEKRKTMSGKEKTKF 60
Query: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
++MAK DK Y++EMK P +G KK DPNA KRP S FFLFCSE+ PKIK +PG+
Sbjct: 61 DEMAKVDKVHYDQEMKDNGPVEGGKKK---DPNALKRPLSGFFLFCSEFHPKIKSTNPGI 117
Query: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 180
SIGD+AKKLGEMW N + +KQPY KAA LKEKYEKD+A Y++KGK D+AK K
Sbjct: 118 SIGDMAKKLGEMWINYSDREKQPYITKAADLKEKYEKDVADYKSKGKFDSAK----GPTK 173
Query: 181 SKKKKEEEEDEEDEEDEEEEEDEEDEDE 208
KK +E+D+EDEE+EEEEE++++E E
Sbjct: 174 IAWKKVKEKDKEDEEEEEEEEEKKEEGE 201
>gi|169168462 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 204
Score = 251 bits (642), Expect = 3e-67
Identities = 131/195 (67%), Positives = 149/195 (76%), Gaps = 11/195 (5%)
Query: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
M KGDPKKP+GKMS+Y FFVQTCREE KKK+P VNF+EFSKKCSERWKTMS KEK KF
Sbjct: 1 MAKGDPKKPKGKMSAYVFFVQTCREECKKKNP---VNFAEFSKKCSERWKTMSGKEKSKF 57
Query: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
++MAK DK +REMK P KG KKK DP+APKRPPS FFLF SE RPKIK +PG+
Sbjct: 58 DEMAKTDKVHCDREMKG--PAKGGKKKK--DPSAPKRPPSGFFLFSSEIRPKIKSTNPGI 113
Query: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 180
SIGDVAKKLGEMWNN +KQPY K AKLKEKYEKD+A ++KGK D +K + K
Sbjct: 114 SIGDVAKKLGEMWNNLNDSEKQPYITKTAKLKEKYEKDVADSKSKGKFDGSK----RPAK 169
Query: 181 SKKKKEEEEDEEDEE 195
KK EEEDE++EE
Sbjct: 170 VAWKKVEEEDEDEEE 184
>gi|169168166 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 204
Score = 251 bits (642), Expect = 3e-67
Identities = 131/195 (67%), Positives = 149/195 (76%), Gaps = 11/195 (5%)
Query: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
M KGDPKKP+GKMS+Y FFVQTCREE KKK+P VNF+EFSKKCSERWKTMS KEK KF
Sbjct: 1 MAKGDPKKPKGKMSAYVFFVQTCREECKKKNP---VNFAEFSKKCSERWKTMSGKEKSKF 57
Query: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
++MAK DK +REMK P KG KKK DP+APKRPPS FFLF SE RPKIK +PG+
Sbjct: 58 DEMAKTDKVHCDREMKG--PAKGGKKKK--DPSAPKRPPSGFFLFSSEIRPKIKSTNPGI 113
Query: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 180
SIGDVAKKLGEMWNN +KQPY K AKLKEKYEKD+A ++KGK D +K + K
Sbjct: 114 SIGDVAKKLGEMWNNLNDSEKQPYITKTAKLKEKYEKDVADSKSKGKFDGSK----RPAK 169
Query: 181 SKKKKEEEEDEEDEE 195
KK EEEDE++EE
Sbjct: 170 VAWKKVEEEDEDEEE 184
>gi|113416897 PREDICTED: similar to high mobility group box 3
isoform 1 [Homo sapiens]
Length = 201
Score = 251 bits (642), Expect = 3e-67
Identities = 131/195 (67%), Positives = 149/195 (76%), Gaps = 11/195 (5%)
Query: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
M KGDPKKP+GKMS+Y FFVQTCREE KKK+P VNF+EFSKKCSERWKTMS KEK KF
Sbjct: 1 MAKGDPKKPKGKMSAYVFFVQTCREECKKKNP---VNFAEFSKKCSERWKTMSGKEKSKF 57
Query: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
++MAK DK +REMK P KG KKK DP+APKRPPS FFLF SE RPKIK +PG+
Sbjct: 58 DEMAKTDKVHCDREMKG--PAKGGKKKK--DPSAPKRPPSGFFLFSSEIRPKIKSTNPGI 113
Query: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 180
SIGDVAKKLGEMWNN +KQPY K AKLKEKYEKD+A ++KGK D +K + K
Sbjct: 114 SIGDVAKKLGEMWNNLNDSEKQPYITKTAKLKEKYEKDVADSKSKGKFDGSK----RPAK 169
Query: 181 SKKKKEEEEDEEDEE 195
KK EEEDE++EE
Sbjct: 170 VAWKKVEEEDEDEEE 184
>gi|239752318 PREDICTED: similar to hCG1647425 [Homo sapiens]
Length = 214
Score = 196 bits (498), Expect = 1e-50
Identities = 97/125 (77%), Positives = 103/125 (82%), Gaps = 1/125 (0%)
Query: 65 KADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGD 124
K D A YEREMK YIPPK ETK KF+DPNAPK PP AFF+F SE PKIK EHPGLSI D
Sbjct: 34 KVDMAHYEREMKIYIPPKAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISD 92
Query: 125 VAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKK 184
VAKKLGEMWN A DDK PYEKKA KLKEKYEKDIAA+ KGKPDAAKKG +KAEK KKK
Sbjct: 93 VAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKK 152
Query: 185 KEEEE 189
KEE++
Sbjct: 153 KEEDK 157
Score = 36.6 bits (83), Expect = 0.017
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 5 DPKKPRGKMSSYAFFVQTCREEHK-KKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
DP P K AFF+ + + K K+HP S+ S+ +KK E W ++ +K +E
Sbjct: 60 DPNAP--KSPPLAFFMFSSEDCPKIKEHPGLSI--SDVAKKLGEMWNYIAEDDKHPYEKK 115
Query: 64 AKADKARYEREMKTY 78
A K +YE+++ +
Sbjct: 116 AVKLKEKYEKDIAAF 130
>gi|239746826 PREDICTED: similar to hCG1647425 [Homo sapiens]
Length = 214
Score = 196 bits (498), Expect = 1e-50
Identities = 97/125 (77%), Positives = 103/125 (82%), Gaps = 1/125 (0%)
Query: 65 KADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGD 124
K D A YEREMK YIPPK ETK KF+DPNAPK PP AFF+F SE PKIK EHPGLSI D
Sbjct: 34 KVDMAHYEREMKIYIPPKAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISD 92
Query: 125 VAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKK 184
VAKKLGEMWN A DDK PYEKKA KLKEKYEKDIAA+ KGKPDAAKKG +KAEK KKK
Sbjct: 93 VAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKK 152
Query: 185 KEEEE 189
KEE++
Sbjct: 153 KEEDK 157
Score = 36.6 bits (83), Expect = 0.017
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 5 DPKKPRGKMSSYAFFVQTCREEHK-KKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
DP P K AFF+ + + K K+HP S+ S+ +KK E W ++ +K +E
Sbjct: 60 DPNAP--KSPPLAFFMFSSEDCPKIKEHPGLSI--SDVAKKLGEMWNYIAEDDKHPYEKK 115
Query: 64 AKADKARYEREMKTY 78
A K +YE+++ +
Sbjct: 116 AVKLKEKYEKDIAAF 130
>gi|239742753 PREDICTED: similar to high mobility group box 3
isoform 2 [Homo sapiens]
Length = 183
Score = 194 bits (493), Expect = 5e-50
Identities = 102/156 (65%), Positives = 116/156 (74%), Gaps = 8/156 (5%)
Query: 40 EFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPP 99
EFSKKCSERWKTMS KEK KF++MAK DK +REMK P KG KKK DP+APKRPP
Sbjct: 19 EFSKKCSERWKTMSGKEKSKFDEMAKTDKVHCDREMKG--PAKGGKKKK--DPSAPKRPP 74
Query: 100 SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDI 159
S FFLF SE RPKIK +PG+SIGDVAKKLGEMWNN +KQPY K AKLKEKYEKD+
Sbjct: 75 SGFFLFSSEIRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKTAKLKEKYEKDV 134
Query: 160 AAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEE 195
A ++KGK D +K + K KK EEEDE++EE
Sbjct: 135 ADSKSKGKFDGSK----RPAKVAWKKVEEEDEDEEE 166
Score = 36.6 bits (83), Expect = 0.017
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 7/95 (7%)
Query: 3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62
K DP P+ S + F R + K +P S+ + +KK E W ++ EK +
Sbjct: 64 KKDPSAPKRPPSGFFLFSSEIRPKIKSTNPGISIG--DVAKKLGEMWNNLNDSEKQPYIT 121
Query: 63 MAKADKARYEREMKTYIPPKGETKKKFKDPNAPKR 97
K +YE+++ ++K KF P +
Sbjct: 122 KTAKLKEKYEKDV-----ADSKSKGKFDGSKRPAK 151
>gi|239757817 PREDICTED: similar to hCG1647425 [Homo sapiens]
Length = 227
Score = 168 bits (425), Expect = 4e-42
Identities = 83/108 (76%), Positives = 90/108 (83%), Gaps = 1/108 (0%)
Query: 82 KGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK 141
+ ETK KF+DPNAPK PP AFF+F SE PKIK EHPGLSI DVAKKLGEMWN A DDK
Sbjct: 78 RAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISDVAKKLGEMWNYIAEDDK 136
Query: 142 QPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEE 189
PYEKKA KLKEKYEKDIAA+ KGKPDAAKKG +KAEK KKKKEE++
Sbjct: 137 HPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKKKEEDK 184
Score = 36.6 bits (83), Expect = 0.017
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 5 DPKKPRGKMSSYAFFVQTCREEHK-KKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
DP P K AFF+ + + K K+HP S+ S+ +KK E W ++ +K +E
Sbjct: 87 DPNAP--KSPPLAFFMFSSEDCPKIKEHPGLSI--SDVAKKLGEMWNYIAEDDKHPYEKK 142
Query: 64 AKADKARYEREMKTY 78
A K +YE+++ +
Sbjct: 143 AVKLKEKYEKDIAAF 157
>gi|57232750 HMG2 like isoform 1 [Homo sapiens]
Length = 186
Score = 151 bits (381), Expect = 5e-37
Identities = 72/164 (43%), Positives = 107/164 (65%), Gaps = 4/164 (2%)
Query: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
MGK KP+ +SSY F+ R + K++ P+ V F EFS+KCSE+W+++S EK K+
Sbjct: 1 MGKEIQLKPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKY 60
Query: 61 EDMAKADKARYEREMKTYIPPKGETKKKFK-DPNAPKRPPSAFFLFCSEYRPKIKGEHPG 119
E +AK DKARY+ EM Y+ G+ KK+ K DP P+RPPS+F LFC ++ ++K E+P
Sbjct: 61 EALAKLDKARYQEEMMNYV---GKRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPN 117
Query: 120 LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYR 163
S+ VAK G+MW+ +K PYE++ A L+ KY +++ YR
Sbjct: 118 WSVVQVAKATGKMWSTATDLEKHPYEQRVALLRAKYFEELELYR 161
Score = 41.2 bits (95), Expect = 7e-04
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 95 PKRPPSAFFLFCSEYRPKIKGEHPGLSIG--DVAKKLGEMWNNTAADDKQPYEKKAAKLK 152
PK S++ F YR K K + P +G + ++K E W + + +K YE A K
Sbjct: 9 PKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLDK 68
Query: 153 EKYEKDIAAYRAKGK 167
+Y++++ Y K K
Sbjct: 69 ARYQEEMMNYVGKRK 83
>gi|4507241 structure specific recognition protein 1 [Homo sapiens]
Length = 709
Score = 93.2 bits (230), Expect = 1e-19
Identities = 54/158 (34%), Positives = 89/158 (56%), Gaps = 11/158 (6%)
Query: 29 KKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKK 88
++ D + F + S + S +++ K + + KA A+ + K K KK
Sbjct: 486 EEEEDVAEEFDSNASASSSSNEGDSDRDEKKRKQLKKAKMAKDRKSRK-----KPVEVKK 540
Query: 89 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
KDPNAPKRP SA+ L+ + R KIK +HPG+SI D++KK GE+W + + K+ +++KA
Sbjct: 541 GKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKA 600
Query: 149 AKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKE 186
+ YEK + Y G+ +++K+ +KSKKKK+
Sbjct: 601 EDARRDYEKAMKEYEG-GRGESSKR-----DKSKKKKK 632
Score = 64.7 bits (156), Expect = 6e-11
Identities = 56/208 (26%), Positives = 88/208 (42%), Gaps = 41/208 (19%)
Query: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
DP P+ MS+Y ++ RE+ K HP S+ ++ SKK E WK MS ++K +++ A
Sbjct: 543 DPNAPKRPMSAYMLWLNASREKIKSDHPGISI--TDLSKKAGEIWKGMSKEKKEEWDRKA 600
Query: 65 KADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGD 124
+ + YE+ MK Y +GE+ K+ K K K+K E
Sbjct: 601 EDARRDYEKAMKEYEGGRGESSKRDKSKKKKK--------------VKVKME-------- 638
Query: 125 VAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKK 184
K +++ + +Q E + K KE D + + G+ KSKKK
Sbjct: 639 -KKSTPSRGSSSKSSSRQLSE--SFKSKEFVSSDES---SSGE-----------NKSKKK 681
Query: 185 KEEEEDEEDEEDEEEEEDEEDEDEEEDD 212
+ ED E+EE ED D+
Sbjct: 682 RRRSEDSEEEELASTPPSSEDSASGSDE 709
>gi|115529449 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 81.3 bits (199), Expect = 6e-16
Identities = 58/192 (30%), Positives = 90/192 (46%), Gaps = 28/192 (14%)
Query: 49 WKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETK--KKFKDPNAPKRPP-SAFFLF 105
W M KEK + A D+ RYERE+ P T KK K PK+PP + + F
Sbjct: 482 WNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAATNSSKKMKFQGEPKKPPMNGYQKF 541
Query: 106 CSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYE--------- 156
E GE L + + ++G W + K+ Y+K A + +++Y+
Sbjct: 542 SQELLSN--GELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQKQYKVHLDLWVKS 599
Query: 157 ---KDIAAYRA----KGK-------PDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEED 202
+D AAY+ K K P+ KS+ ++++EEDE+DE+++EEEED
Sbjct: 600 LSPQDRAAYKEYISNKRKSMTKLRGPNPKSSRTTLQSKSESEEDDEEDEDDEDEDEEEED 659
Query: 203 EEDEDEEEDDDD 214
+E+ D ED D
Sbjct: 660 DENGDSSEDGGD 671
Score = 69.7 bits (169), Expect = 2e-12
Identities = 55/194 (28%), Positives = 96/194 (49%), Gaps = 27/194 (13%)
Query: 2 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 61
GKG +KP+ +S+ F + R + +++ P+ S SE ++ + W +S K+K K++
Sbjct: 363 GKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSE--SELTRLLARMWNDLSEKKKAKYK 420
Query: 62 DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 121
A KA+ ER+ P GE +++ K P +PKR ++ + G++
Sbjct: 421 AREAALKAQSERK------PGGEREERGKLPESPKRAEEI-------WQQSVIGDYLARF 467
Query: 122 IGDVAKKLGEM---WNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKA 178
D K L M WNN +K + KKAA+ +++YE++++ RA P AA
Sbjct: 468 KNDRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRA---PPAA------T 518
Query: 179 EKSKKKKEEEEDEE 192
SKK K + E ++
Sbjct: 519 NSSKKMKFQGEPKK 532
Score = 65.5 bits (158), Expect = 3e-11
Identities = 47/172 (27%), Positives = 73/172 (42%), Gaps = 38/172 (22%)
Query: 45 CSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE---------------TKKKF 89
CS++WK +S KEK + K YE E+ ++ E KK+
Sbjct: 291 CSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNINKKQA 350
Query: 90 KDPNA--------------PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNN 135
P + PKRP SA F+F E R +++ E P LS ++ + L MWN+
Sbjct: 351 TSPASKKPAQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWND 410
Query: 136 TAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEE 187
+ K Y+ + A LK + E+ KP ++ K +S K+ EE
Sbjct: 411 LSEKKKAKYKAREAALKAQSER---------KPGGEREERGKLPESPKRAEE 453
Score = 50.1 bits (118), Expect = 1e-06
Identities = 46/155 (29%), Positives = 72/155 (46%), Gaps = 12/155 (7%)
Query: 36 VNFSEFS-KKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNA 94
V F +FS C +W +S E KF + + E Y KG KK K P+
Sbjct: 58 VAFKDFSGDMCKLKWVEIS-NEVRKFRTLTELILDAQEHVKNPY---KG--KKLKKHPDF 111
Query: 95 PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEK 154
PK+P + +F F E R K HP +S D+ K L + + K Y + + K++
Sbjct: 112 PKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQE 171
Query: 155 YEKDIAAYRAKGKPDA---AKKGVVKAEKSKKKKE 186
+E+++A +R + PD AKK + EK K ++
Sbjct: 172 FERNLARFR-EDHPDLIQNAKKSDI-PEKPKTPQQ 204
Score = 43.1 bits (100), Expect = 2e-04
Identities = 47/221 (21%), Positives = 98/221 (44%), Gaps = 23/221 (10%)
Query: 3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62
K P P+ ++ Y F R ++ K HP+ S + +K S+++K + K+K K+
Sbjct: 106 KKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSN--LDLTKILSKKYKELPEKKKMKYIQ 163
Query: 63 MAKADKARYEREMKTYI---PPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPG 119
+ +K +ER + + P + KK P PK P ++ + K++ P
Sbjct: 164 DFQREKQEFERNLARFREDHPDLIQNAKKSDIPEKPKTPQQLWYTHEKKVYLKVR---PD 220
Query: 120 LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYE--------KDIAAYRA------K 165
+ D +K E+ + K K +LK+K++ + Y A K
Sbjct: 221 EIMRDYIQKHPELNISEEGITKSTLTKAERQLKDKFDGRPTKPPPNSYSLYCAELMANMK 280
Query: 166 GKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEEDE 206
P + ++ V+ +++ K ++E+D ++ +++++D E E
Sbjct: 281 DVP-STERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVE 320
>gi|115529451 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 81.3 bits (199), Expect = 6e-16
Identities = 58/192 (30%), Positives = 90/192 (46%), Gaps = 28/192 (14%)
Query: 49 WKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETK--KKFKDPNAPKRPP-SAFFLF 105
W M KEK + A D+ RYERE+ P T KK K PK+PP + + F
Sbjct: 482 WNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAATNSSKKMKFQGEPKKPPMNGYQKF 541
Query: 106 CSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYE--------- 156
E GE L + + ++G W + K+ Y+K A + +++Y+
Sbjct: 542 SQELLSN--GELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQKQYKVHLDLWVKS 599
Query: 157 ---KDIAAYRA----KGK-------PDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEED 202
+D AAY+ K K P+ KS+ ++++EEDE+DE+++EEEED
Sbjct: 600 LSPQDRAAYKEYISNKRKSMTKLRGPNPKSSRTTLQSKSESEEDDEEDEDDEDEDEEEED 659
Query: 203 EEDEDEEEDDDD 214
+E+ D ED D
Sbjct: 660 DENGDSSEDGGD 671
Score = 69.7 bits (169), Expect = 2e-12
Identities = 55/194 (28%), Positives = 96/194 (49%), Gaps = 27/194 (13%)
Query: 2 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 61
GKG +KP+ +S+ F + R + +++ P+ S SE ++ + W +S K+K K++
Sbjct: 363 GKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSE--SELTRLLARMWNDLSEKKKAKYK 420
Query: 62 DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 121
A KA+ ER+ P GE +++ K P +PKR ++ + G++
Sbjct: 421 AREAALKAQSERK------PGGEREERGKLPESPKRAEEI-------WQQSVIGDYLARF 467
Query: 122 IGDVAKKLGEM---WNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKA 178
D K L M WNN +K + KKAA+ +++YE++++ RA P AA
Sbjct: 468 KNDRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRA---PPAA------T 518
Query: 179 EKSKKKKEEEEDEE 192
SKK K + E ++
Sbjct: 519 NSSKKMKFQGEPKK 532
Score = 65.5 bits (158), Expect = 3e-11
Identities = 47/172 (27%), Positives = 73/172 (42%), Gaps = 38/172 (22%)
Query: 45 CSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE---------------TKKKF 89
CS++WK +S KEK + K YE E+ ++ E KK+
Sbjct: 291 CSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNINKKQA 350
Query: 90 KDPNA--------------PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNN 135
P + PKRP SA F+F E R +++ E P LS ++ + L MWN+
Sbjct: 351 TSPASKKPAQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWND 410
Query: 136 TAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEE 187
+ K Y+ + A LK + E+ KP ++ K +S K+ EE
Sbjct: 411 LSEKKKAKYKAREAALKAQSER---------KPGGEREERGKLPESPKRAEE 453
Score = 50.1 bits (118), Expect = 1e-06
Identities = 46/155 (29%), Positives = 72/155 (46%), Gaps = 12/155 (7%)
Query: 36 VNFSEFS-KKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNA 94
V F +FS C +W +S E KF + + E Y KG KK K P+
Sbjct: 58 VAFKDFSGDMCKLKWVEIS-NEVRKFRTLTELILDAQEHVKNPY---KG--KKLKKHPDF 111
Query: 95 PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEK 154
PK+P + +F F E R K HP +S D+ K L + + K Y + + K++
Sbjct: 112 PKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQE 171
Query: 155 YEKDIAAYRAKGKPDA---AKKGVVKAEKSKKKKE 186
+E+++A +R + PD AKK + EK K ++
Sbjct: 172 FERNLARFR-EDHPDLIQNAKKSDI-PEKPKTPQQ 204
Score = 43.1 bits (100), Expect = 2e-04
Identities = 47/221 (21%), Positives = 98/221 (44%), Gaps = 23/221 (10%)
Query: 3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62
K P P+ ++ Y F R ++ K HP+ S + +K S+++K + K+K K+
Sbjct: 106 KKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSN--LDLTKILSKKYKELPEKKKMKYIQ 163
Query: 63 MAKADKARYEREMKTYI---PPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPG 119
+ +K +ER + + P + KK P PK P ++ + K++ P
Sbjct: 164 DFQREKQEFERNLARFREDHPDLIQNAKKSDIPEKPKTPQQLWYTHEKKVYLKVR---PD 220
Query: 120 LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYE--------KDIAAYRA------K 165
+ D +K E+ + K K +LK+K++ + Y A K
Sbjct: 221 EIMRDYIQKHPELNISEEGITKSTLTKAERQLKDKFDGRPTKPPPNSYSLYCAELMANMK 280
Query: 166 GKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEEDE 206
P + ++ V+ +++ K ++E+D ++ +++++D E E
Sbjct: 281 DVP-STERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVE 320
>gi|7657671 upstream binding transcription factor, RNA polymerase I
isoform a [Homo sapiens]
Length = 764
Score = 81.3 bits (199), Expect = 6e-16
Identities = 58/192 (30%), Positives = 90/192 (46%), Gaps = 28/192 (14%)
Query: 49 WKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETK--KKFKDPNAPKRPP-SAFFLF 105
W M KEK + A D+ RYERE+ P T KK K PK+PP + + F
Sbjct: 519 WNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAATNSSKKMKFQGEPKKPPMNGYQKF 578
Query: 106 CSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYE--------- 156
E GE L + + ++G W + K+ Y+K A + +++Y+
Sbjct: 579 SQELLSN--GELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQKQYKVHLDLWVKS 636
Query: 157 ---KDIAAYRA----KGK-------PDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEED 202
+D AAY+ K K P+ KS+ ++++EEDE+DE+++EEEED
Sbjct: 637 LSPQDRAAYKEYISNKRKSMTKLRGPNPKSSRTTLQSKSESEEDDEEDEDDEDEDEEEED 696
Query: 203 EEDEDEEEDDDD 214
+E+ D ED D
Sbjct: 697 DENGDSSEDGGD 708
Score = 69.7 bits (169), Expect = 2e-12
Identities = 55/194 (28%), Positives = 96/194 (49%), Gaps = 27/194 (13%)
Query: 2 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 61
GKG +KP+ +S+ F + R + +++ P+ S SE ++ + W +S K+K K++
Sbjct: 400 GKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSE--SELTRLLARMWNDLSEKKKAKYK 457
Query: 62 DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 121
A KA+ ER+ P GE +++ K P +PKR ++ + G++
Sbjct: 458 AREAALKAQSERK------PGGEREERGKLPESPKRAEEI-------WQQSVIGDYLARF 504
Query: 122 IGDVAKKLGEM---WNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKA 178
D K L M WNN +K + KKAA+ +++YE++++ RA P AA
Sbjct: 505 KNDRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRA---PPAA------T 555
Query: 179 EKSKKKKEEEEDEE 192
SKK K + E ++
Sbjct: 556 NSSKKMKFQGEPKK 569
Score = 65.5 bits (158), Expect = 3e-11
Identities = 47/172 (27%), Positives = 73/172 (42%), Gaps = 38/172 (22%)
Query: 45 CSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE---------------TKKKF 89
CS++WK +S KEK + K YE E+ ++ E KK+
Sbjct: 328 CSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNINKKQA 387
Query: 90 KDPNA--------------PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNN 135
P + PKRP SA F+F E R +++ E P LS ++ + L MWN+
Sbjct: 388 TSPASKKPAQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWND 447
Query: 136 TAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEE 187
+ K Y+ + A LK + E+ KP ++ K +S K+ EE
Sbjct: 448 LSEKKKAKYKAREAALKAQSER---------KPGGEREERGKLPESPKRAEE 490
Score = 55.5 bits (132), Expect = 3e-08
Identities = 41/188 (21%), Positives = 90/188 (47%), Gaps = 9/188 (4%)
Query: 3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62
K P P+ ++ Y F R ++ K HP+ S + +K S+++K + K+K K+
Sbjct: 106 KKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSN--LDLTKILSKKYKELPEKKKMKYIQ 163
Query: 63 MAKADKARYEREMKTYI---PPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPG 119
+ +K +ER + + P + KK P PK P ++ + K++ P
Sbjct: 164 DFQREKQEFERNLARFREDHPDLIQNAKKSDIPEKPKTPQQLWYTHEKKVYLKVR---PD 220
Query: 120 LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK-GKPDAAKKGVVKA 178
+ +V LG+ W+ + + + KA + +++YE+ + Y K + + +++G+ K+
Sbjct: 221 ATTKEVKDSLGKQWSQLSDKKRLKWIHKALEQRKEYEEIMRDYIQKHPELNISEEGITKS 280
Query: 179 EKSKKKKE 186
+K +++
Sbjct: 281 TLTKAERQ 288
Score = 50.1 bits (118), Expect = 1e-06
Identities = 46/155 (29%), Positives = 72/155 (46%), Gaps = 12/155 (7%)
Query: 36 VNFSEFS-KKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNA 94
V F +FS C +W +S E KF + + E Y KG KK K P+
Sbjct: 58 VAFKDFSGDMCKLKWVEIS-NEVRKFRTLTELILDAQEHVKNPY---KG--KKLKKHPDF 111
Query: 95 PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEK 154
PK+P + +F F E R K HP +S D+ K L + + K Y + + K++
Sbjct: 112 PKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQE 171
Query: 155 YEKDIAAYRAKGKPDA---AKKGVVKAEKSKKKKE 186
+E+++A +R + PD AKK + EK K ++
Sbjct: 172 FERNLARFR-EDHPDLIQNAKKSDI-PEKPKTPQQ 204
Score = 45.4 bits (106), Expect = 4e-05
Identities = 39/175 (22%), Positives = 73/175 (41%), Gaps = 25/175 (14%)
Query: 24 REEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPP-- 81
++ + K PDA+ E ++W +S K++ K+ A + YE M+ YI
Sbjct: 211 KKVYLKVRPDATTK--EVKDSLGKQWSQLSDKKRLKWIHKALEQRKEYEEIMRDYIQKHP 268
Query: 82 ---------------KGETKKKFKDPNAP-KRPPSAFFLFCSEYRPKIKGEHPGLSIGDV 125
K E + K K P K PP+++ L+C+E +K + +
Sbjct: 269 ELNISEEGITKSTLTKAERQLKDKFDGRPTKPPPNSYSLYCAELMANMK----DVPSTER 324
Query: 126 AKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 180
+ W + +K Y KK + K+ YE ++ + + P+ ++ V+ EK
Sbjct: 325 MVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRF-LESLPEEEQQRVLGEEK 378
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.304 0.126 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,562,785
Number of Sequences: 37866
Number of extensions: 595130
Number of successful extensions: 48698
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1334
Number of HSP's successfully gapped in prelim test: 315
Number of HSP's that attempted gapping in prelim test: 9560
Number of HSP's gapped (non-prelim): 16150
length of query: 215
length of database: 18,247,518
effective HSP length: 98
effective length of query: 117
effective length of database: 14,536,650
effective search space: 1700788050
effective search space used: 1700788050
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.