Guide to the Human Genome
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Search of human proteins with 4504425

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4504425 high-mobility group box 1 [Homo sapiens]
         (215 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4504425 high-mobility group box 1 [Homo sapiens]                   447   e-126
gi|56806673 high-mobility group box 1-like 1 [Homo sapiens]           412   e-115
gi|194688135 high-mobility group box 2 [Homo sapiens]                 362   e-100
gi|194688133 high-mobility group box 2 [Homo sapiens]                 362   e-100
gi|11321591 high-mobility group box 2 [Homo sapiens]                  362   e-100
gi|169202818 PREDICTED: similar to hCG1991922 [Homo sapiens]          329   1e-90
gi|239749996 PREDICTED: similar to hCG1991922 [Homo sapiens]          329   1e-90
gi|239744307 PREDICTED: similar to hCG1991922 [Homo sapiens]          322   1e-88
gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens]            321   3e-88
gi|71143137 high-mobility group box 3 [Homo sapiens]                  311   3e-85
gi|113421073 PREDICTED: similar to high mobility group box 3 [Ho...   283   6e-77
gi|113420668 PREDICTED: similar to high mobility group box 3 [Ho...   283   6e-77
gi|169184027 PREDICTED: similar to high mobility group box 3 [Ho...   283   8e-77
gi|169212060 PREDICTED: high mobility group protein B3-like prot...   268   3e-72
gi|239745831 PREDICTED: high mobility group protein B3-like prot...   268   3e-72
gi|169217198 PREDICTED: similar to hCG1644442 [Homo sapiens]          259   2e-69
gi|169216377 PREDICTED: similar to hCG1644442 [Homo sapiens]          259   2e-69
gi|169216609 PREDICTED: hypothetical protein LOC203510 [Homo sap...   259   2e-69
gi|169168462 PREDICTED: similar to high mobility group box 3 [Ho...   251   3e-67
gi|169168166 PREDICTED: similar to high mobility group box 3 [Ho...   251   3e-67
gi|113416897 PREDICTED: similar to high mobility group box 3 iso...   251   3e-67
gi|239752318 PREDICTED: similar to hCG1647425 [Homo sapiens]          196   1e-50
gi|239746826 PREDICTED: similar to hCG1647425 [Homo sapiens]          196   1e-50
gi|239742753 PREDICTED: similar to high mobility group box 3 iso...   194   5e-50
gi|239757817 PREDICTED: similar to hCG1647425 [Homo sapiens]          168   4e-42
gi|57232750 HMG2 like isoform 1 [Homo sapiens]                        151   5e-37
gi|4507241 structure specific recognition protein 1 [Homo sapiens]     93   1e-19
gi|115529449 upstream binding transcription factor, RNA polymera...    81   6e-16
gi|115529451 upstream binding transcription factor, RNA polymera...    81   6e-16
gi|7657671 upstream binding transcription factor, RNA polymerase...    81   6e-16

>gi|4504425 high-mobility group box 1 [Homo sapiens]
          Length = 215

 Score =  447 bits (1149), Expect = e-126
 Identities = 215/215 (100%), Positives = 215/215 (100%)

Query: 1   MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
           MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
Sbjct: 1   MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60

Query: 61  EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
           EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
Sbjct: 61  EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120

Query: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 180
           SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK
Sbjct: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 180

Query: 181 SKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE 215
           SKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE
Sbjct: 181 SKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE 215


>gi|56806673 high-mobility group box 1-like 1 [Homo sapiens]
          Length = 211

 Score =  412 bits (1058), Expect = e-115
 Identities = 200/215 (93%), Positives = 205/215 (95%), Gaps = 4/215 (1%)

Query: 1   MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
           MGKGDPKKPRGKMSSYAFFVQTCREEHKKKH DASVNFSEFS KCSERWKTMSAKEKGKF
Sbjct: 1   MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHSDASVNFSEFSNKCSERWKTMSAKEKGKF 60

Query: 61  EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
           EDMAKADK  YER+MKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEY PKIKGEHPGL
Sbjct: 61  EDMAKADKTHYERQMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYHPKIKGEHPGL 120

Query: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 180
           SIGDVAKKLGEMWNNTAADDKQP EKKAAKLKEKYEKDIAAY+AKGKP+AAKKGVVKAEK
Sbjct: 121 SIGDVAKKLGEMWNNTAADDKQPGEKKAAKLKEKYEKDIAAYQAKGKPEAAKKGVVKAEK 180

Query: 181 SKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE 215
           SKKKKEEEEDEEDEEDEE    EEDE++EEDDDDE
Sbjct: 181 SKKKKEEEEDEEDEEDEE----EEDEEDEEDDDDE 211


>gi|194688135 high-mobility group box 2 [Homo sapiens]
          Length = 209

 Score =  362 bits (929), Expect = e-100
 Identities = 170/209 (81%), Positives = 189/209 (90%)

Query: 1   MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
           MGKGDP KPRGKMSSYAFFVQTCREEHKKKHPD+SVNF+EFSKKCSERWKTMSAKEK KF
Sbjct: 1   MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60

Query: 61  EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
           EDMAK+DKARY+REMK Y+PPKG+ K K KDPNAPKRPPSAFFLFCSE+RPKIK EHPGL
Sbjct: 61  EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120

Query: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 180
           SIGD AKKLGEMW+  +A DKQPYE+KAAKLKEKYEKDIAAYRAKGK +A KKG  +   
Sbjct: 121 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG 180

Query: 181 SKKKKEEEEDEEDEEDEEEEEDEEDEDEE 209
           SKKK E E++EE+EE+E+E+E+EEDEDEE
Sbjct: 181 SKKKNEPEDEEEEEEEEDEDEEEEDEDEE 209


>gi|194688133 high-mobility group box 2 [Homo sapiens]
          Length = 209

 Score =  362 bits (929), Expect = e-100
 Identities = 170/209 (81%), Positives = 189/209 (90%)

Query: 1   MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
           MGKGDP KPRGKMSSYAFFVQTCREEHKKKHPD+SVNF+EFSKKCSERWKTMSAKEK KF
Sbjct: 1   MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60

Query: 61  EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
           EDMAK+DKARY+REMK Y+PPKG+ K K KDPNAPKRPPSAFFLFCSE+RPKIK EHPGL
Sbjct: 61  EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120

Query: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 180
           SIGD AKKLGEMW+  +A DKQPYE+KAAKLKEKYEKDIAAYRAKGK +A KKG  +   
Sbjct: 121 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG 180

Query: 181 SKKKKEEEEDEEDEEDEEEEEDEEDEDEE 209
           SKKK E E++EE+EE+E+E+E+EEDEDEE
Sbjct: 181 SKKKNEPEDEEEEEEEEDEDEEEEDEDEE 209


>gi|11321591 high-mobility group box 2 [Homo sapiens]
          Length = 209

 Score =  362 bits (929), Expect = e-100
 Identities = 170/209 (81%), Positives = 189/209 (90%)

Query: 1   MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
           MGKGDP KPRGKMSSYAFFVQTCREEHKKKHPD+SVNF+EFSKKCSERWKTMSAKEK KF
Sbjct: 1   MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60

Query: 61  EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
           EDMAK+DKARY+REMK Y+PPKG+ K K KDPNAPKRPPSAFFLFCSE+RPKIK EHPGL
Sbjct: 61  EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120

Query: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 180
           SIGD AKKLGEMW+  +A DKQPYE+KAAKLKEKYEKDIAAYRAKGK +A KKG  +   
Sbjct: 121 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG 180

Query: 181 SKKKKEEEEDEEDEEDEEEEEDEEDEDEE 209
           SKKK E E++EE+EE+E+E+E+EEDEDEE
Sbjct: 181 SKKKNEPEDEEEEEEEEDEDEEEEDEDEE 209


>gi|169202818 PREDICTED: similar to hCG1991922 [Homo sapiens]
          Length = 488

 Score =  329 bits (843), Expect = 1e-90
 Identities = 162/188 (86%), Positives = 171/188 (90%), Gaps = 7/188 (3%)

Query: 35  SVNFSEFSKKCSERWKTMSAKEKGKF-------EDMAKADKARYEREMKTYIPPKGETKK 87
           SVNFSEFSKKCSERWK MSAKEKGKF       EDMAKADKA Y+REMKTYIPPKGETKK
Sbjct: 164 SVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKK 223

Query: 88  KFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKK 147
           KFKDPNAPKRPPSAFFL+ SEY PKIKGE PGLS GDVAKKLGEMWNNTAADDKQPYEK+
Sbjct: 224 KFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKR 283

Query: 148 AAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEEDED 207
           +AKLKEKYEKDIAAYRAKGK DAA  GVVKA KSKKKKEEEE+EEDEEDEEEE+DEEDED
Sbjct: 284 SAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEEDED 343

Query: 208 EEEDDDDE 215
           EE+D+D+E
Sbjct: 344 EEDDEDEE 351



 Score = 67.4 bits (163), Expect = 9e-12
 Identities = 55/211 (26%), Positives = 84/211 (39%), Gaps = 80/211 (37%)

Query: 5   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
           DP  P+   S  AFF+       K K     ++F + +KK  E W   +A +K  +E  +
Sbjct: 227 DPNAPKRPPS--AFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRS 284

Query: 65  KADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGD 124
              K +YE+++  Y                                 + KG+H   + G 
Sbjct: 285 AKLKEKYEKDIAAY---------------------------------RAKGKHDAANNGV 311

Query: 125 VAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKK 184
           V                     KAAK K+K E++                        + 
Sbjct: 312 V---------------------KAAKSKKKKEEE------------------------EN 326

Query: 185 KEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE 215
           +E+EEDEE+E+DEE+E++E+DEDEEED DDE
Sbjct: 327 EEDEEDEEEEKDEEDEDEEDDEDEEEDGDDE 357


>gi|239749996 PREDICTED: similar to hCG1991922 [Homo sapiens]
          Length = 487

 Score =  329 bits (843), Expect = 1e-90
 Identities = 162/188 (86%), Positives = 171/188 (90%), Gaps = 7/188 (3%)

Query: 35  SVNFSEFSKKCSERWKTMSAKEKGKF-------EDMAKADKARYEREMKTYIPPKGETKK 87
           SVNFSEFSKKCSERWK MSAKEKGKF       EDMAKADKA Y+REMKTYIPPKGETKK
Sbjct: 164 SVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKK 223

Query: 88  KFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKK 147
           KFKDPNAPKRPPSAFFL+ SEY PKIKGE PGLS GDVAKKLGEMWNNTAADDKQPYEK+
Sbjct: 224 KFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKR 283

Query: 148 AAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEEDED 207
           +AKLKEKYEKDIAAYRAKGK DAA  GVVKA KSKKKKEEEE+EEDEEDEEEE+DEEDED
Sbjct: 284 SAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEEDED 343

Query: 208 EEEDDDDE 215
           EE+D+D+E
Sbjct: 344 EEDDEDEE 351


>gi|239744307 PREDICTED: similar to hCG1991922 [Homo sapiens]
          Length = 486

 Score =  322 bits (826), Expect = 1e-88
 Identities = 161/188 (85%), Positives = 170/188 (90%), Gaps = 8/188 (4%)

Query: 35  SVNFSEFSKKCSERWKTMSAKEKGKF-------EDMAKADKARYEREMKTYIPPKGETKK 87
           SVNFSEFSKKCSERWK MSAKEKGKF       EDMAKADKA Y+REMKTYIPPKGETKK
Sbjct: 164 SVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKK 223

Query: 88  KFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKK 147
           KFKDPNAPKRPPSAFFL+ SEY PKIKGE PGLS GDVAKKLGEMWNNTAADDKQPYEK+
Sbjct: 224 KFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKR 283

Query: 148 AAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEEDED 207
           +AKLKEKYEKDIAAYRAKGK DAA  GVVKA KSKKKKEEEE+EEDEEDEEEE+D EDED
Sbjct: 284 SAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKD-EDED 342

Query: 208 EEEDDDDE 215
           EE+D+D+E
Sbjct: 343 EEDDEDEE 350



 Score = 61.2 bits (147), Expect = 6e-10
 Identities = 55/212 (25%), Positives = 82/212 (38%), Gaps = 84/212 (39%)

Query: 5   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
           DP  P+   S  AFF+       K K     ++F + +KK  E W   +A +K  +E  +
Sbjct: 227 DPNAPKRPPS--AFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRS 284

Query: 65  KADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGD 124
              K +YE+++  Y                                 + KG+H   + G 
Sbjct: 285 AKLKEKYEKDIAAY---------------------------------RAKGKHDAANNGV 311

Query: 125 VAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKK 184
           V                     KAAK K+K                           K++
Sbjct: 312 V---------------------KAAKSKKK---------------------------KEE 323

Query: 185 KEEEEDEEDEEDE-EEEEDEEDEDEEEDDDDE 215
           +E EEDEEDEE+E +E+EDEED+++EED DDE
Sbjct: 324 EENEEDEEDEEEEKDEDEDEEDDEDEEDGDDE 355


>gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens]
          Length = 879

 Score =  321 bits (823), Expect = 3e-88
 Identities = 156/180 (86%), Positives = 165/180 (91%)

Query: 25  EEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE 84
           EEHKKK+PDASV FSEF KKCSE WKT+ AKEKGKFEDMAKADKA YEREMKTYIPPKGE
Sbjct: 699 EEHKKKNPDASVKFSEFLKKCSETWKTIFAKEKGKFEDMAKADKAHYEREMKTYIPPKGE 758

Query: 85  TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPY 144
            KKKFKDPNAPKRPP AFFLFCSEYRPKIKGEHPGLSI DV KKL  MWNNTAA DKQ Y
Sbjct: 759 KKKKFKDPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAGMWNNTAAADKQFY 818

Query: 145 EKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEE 204
           EKKAAKLKEKY+KDIAAYRAKGKP++AKK VVKAEKSKKKKEEEEDEEDE++EE EED++
Sbjct: 819 EKKAAKLKEKYKKDIAAYRAKGKPNSAKKRVVKAEKSKKKKEEEEDEEDEQEEENEEDDD 878



 Score = 37.0 bits (84), Expect = 0.013
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 9/93 (9%)

Query: 5   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
           DP  P+    ++  F    R + K +HP  S++  +  KK +  W   +A +K  +E  A
Sbjct: 765 DPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSID--DVVKKLAGMWNNTAAADKQFYEKKA 822

Query: 65  KADKARYEREMKTYIPPKGETKKKFKDPNAPKR 97
              K +Y++++  Y       + K K  +A KR
Sbjct: 823 AKLKEKYKKDIAAY-------RAKGKPNSAKKR 848


>gi|71143137 high-mobility group box 3 [Homo sapiens]
          Length = 200

 Score =  311 bits (796), Expect = 3e-85
 Identities = 152/206 (73%), Positives = 171/206 (83%), Gaps = 6/206 (2%)

Query: 1   MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
           M KGDPKKP+GKMS+YAFFVQTCREEHKKK+P+  VNF+EFSKKCSERWKTMS KEK KF
Sbjct: 1   MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKF 60

Query: 61  EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
           ++MAKADK RY+REMK Y P KG  KKK  DPNAPKRPPS FFLFCSE+RPKIK  +PG+
Sbjct: 61  DEMAKADKVRYDREMKDYGPAKGGKKKK--DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118

Query: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 180
           SIGDVAKKLGEMWNN    +KQPY  KAAKLKEKYEKD+A Y++KGK D AK       K
Sbjct: 119 SIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADYKSKGKFDGAK----GPAK 174

Query: 181 SKKKKEEEEDEEDEEDEEEEEDEEDE 206
             +KK EEEDEE+EE+EEEEE+EEDE
Sbjct: 175 VARKKVEEEDEEEEEEEEEEEEEEDE 200


>gi|113421073 PREDICTED: similar to high mobility group box 3 [Homo
           sapiens]
          Length = 208

 Score =  283 bits (725), Expect = 6e-77
 Identities = 142/206 (68%), Positives = 163/206 (79%), Gaps = 7/206 (3%)

Query: 1   MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
           M KGDPKKP+GKMS+YAF VQTC +EHKKK+P+  VNF+EFSKKCS RWKTMS+KEK KF
Sbjct: 1   MAKGDPKKPQGKMSAYAFSVQTCCKEHKKKNPEVPVNFAEFSKKCSGRWKTMSSKEKFKF 60

Query: 61  EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
            +MAKAD+  Y+REMK Y P KG  KK   DPNAPKRPPS FFLFCSE+RPKIK  +PG+
Sbjct: 61  GEMAKADEVCYDREMKDYGPAKGGKKK---DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 117

Query: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 180
           SIGDVAKKLGEMWNN    +KQPY  KAAKLKEKYEKD+   + KGK   AK    +  K
Sbjct: 118 SIGDVAKKLGEMWNNLNDSEKQPYVTKAAKLKEKYEKDVVDCKLKGKFYGAK----RPAK 173

Query: 181 SKKKKEEEEDEEDEEDEEEEEDEEDE 206
             +KK EEEDEEDEE+EE+E+DEEDE
Sbjct: 174 VARKKVEEEDEEDEEEEEKEKDEEDE 199


>gi|113420668 PREDICTED: similar to high mobility group box 3 [Homo
           sapiens]
          Length = 208

 Score =  283 bits (725), Expect = 6e-77
 Identities = 142/206 (68%), Positives = 163/206 (79%), Gaps = 7/206 (3%)

Query: 1   MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
           M KGDPKKP+GKMS+YAF VQTC +EHKKK+P+  VNF+EFSKKCS RWKTMS+KEK KF
Sbjct: 1   MAKGDPKKPQGKMSAYAFSVQTCCKEHKKKNPEVPVNFAEFSKKCSGRWKTMSSKEKFKF 60

Query: 61  EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
            +MAKAD+  Y+REMK Y P KG  KK   DPNAPKRPPS FFLFCSE+RPKIK  +PG+
Sbjct: 61  GEMAKADEVCYDREMKDYGPAKGGKKK---DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 117

Query: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 180
           SIGDVAKKLGEMWNN    +KQPY  KAAKLKEKYEKD+   + KGK   AK    +  K
Sbjct: 118 SIGDVAKKLGEMWNNLNDSEKQPYVTKAAKLKEKYEKDVVDCKLKGKFYGAK----RPAK 173

Query: 181 SKKKKEEEEDEEDEEDEEEEEDEEDE 206
             +KK EEEDEEDEE+EE+E+DEEDE
Sbjct: 174 VARKKVEEEDEEDEEEEEKEKDEEDE 199


>gi|169184027 PREDICTED: similar to high mobility group box 3 [Homo
           sapiens]
          Length = 208

 Score =  283 bits (724), Expect = 8e-77
 Identities = 142/206 (68%), Positives = 163/206 (79%), Gaps = 7/206 (3%)

Query: 1   MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
           M KGDPKKP+GKMS+YAF VQTC +EHKKK+P+  VNF+EFSKKCS RWKTMS+KEK KF
Sbjct: 1   MAKGDPKKPQGKMSAYAFSVQTCCKEHKKKNPEVLVNFAEFSKKCSGRWKTMSSKEKFKF 60

Query: 61  EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
            +MAKAD+  Y+REMK Y P KG  KK   DPNAPKRPPS FFLFCSE+RPKIK  +PG+
Sbjct: 61  GEMAKADEVCYDREMKDYGPAKGGKKK---DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 117

Query: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 180
           SIGDVAKKLGEMWNN    +KQPY  KAAKLKEKYEKD+   + KGK   AK    +  K
Sbjct: 118 SIGDVAKKLGEMWNNLNDSEKQPYVTKAAKLKEKYEKDVVDCKLKGKFYGAK----RPAK 173

Query: 181 SKKKKEEEEDEEDEEDEEEEEDEEDE 206
             +KK EEEDEEDEE+EE+E+DEEDE
Sbjct: 174 VARKKVEEEDEEDEEEEEKEKDEEDE 199


>gi|169212060 PREDICTED: high mobility group protein B3-like
           protein-like [Homo sapiens]
          Length = 207

 Score =  268 bits (684), Expect = 3e-72
 Identities = 130/194 (67%), Positives = 151/194 (77%), Gaps = 7/194 (3%)

Query: 1   MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
           M KGDPKKP+GKMS+YAFFVQTCREEHKKK+P   +NF+EFSKKCSERWKTMS KEK KF
Sbjct: 1   MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKF 60

Query: 61  EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
            ++AKADK  Y++E+K Y P KG  KK   DPNAPKRPPS FFLFCSE+ PK K  +PG+
Sbjct: 61  NELAKADKVHYDQEIKDYGPAKGGKKK---DPNAPKRPPSGFFLFCSEFCPKSKSTNPGI 117

Query: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 180
            IGDVAKKLGEMW N    +KQPY  +AAKLKEKYEKD+A Y++KGK D AK       K
Sbjct: 118 PIGDVAKKLGEMWKNLNDSEKQPYITQAAKLKEKYEKDVAVYKSKGKSDGAKGPA----K 173

Query: 181 SKKKKEEEEDEEDE 194
             +KK EEEDE++E
Sbjct: 174 VAQKKVEEEDEDEE 187


>gi|239745831 PREDICTED: high mobility group protein B3-like
           protein-like [Homo sapiens]
          Length = 207

 Score =  268 bits (684), Expect = 3e-72
 Identities = 130/194 (67%), Positives = 151/194 (77%), Gaps = 7/194 (3%)

Query: 1   MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
           M KGDPKKP+GKMS+YAFFVQTCREEHKKK+P   +NF+EFSKKCSERWKTMS KEK KF
Sbjct: 1   MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKF 60

Query: 61  EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
            ++AKADK  Y++E+K Y P KG  KK   DPNAPKRPPS FFLFCSE+ PK K  +PG+
Sbjct: 61  NELAKADKVHYDQEIKDYGPAKGGKKK---DPNAPKRPPSGFFLFCSEFCPKSKSTNPGI 117

Query: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 180
            IGDVAKKLGEMW N    +KQPY  +AAKLKEKYEKD+A Y++KGK D AK       K
Sbjct: 118 PIGDVAKKLGEMWKNLNDSEKQPYITQAAKLKEKYEKDVAVYKSKGKSDGAKGPA----K 173

Query: 181 SKKKKEEEEDEEDE 194
             +KK EEEDE++E
Sbjct: 174 VAQKKVEEEDEDEE 187


>gi|169217198 PREDICTED: similar to hCG1644442 [Homo sapiens]
          Length = 201

 Score =  259 bits (661), Expect = 2e-69
 Identities = 131/208 (62%), Positives = 160/208 (76%), Gaps = 7/208 (3%)

Query: 1   MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
           M +GD KKP+GKMS+YAFF QTCREEHKKK+P+  VNF EFSKKCSE+ KTMS KEK KF
Sbjct: 1   MAEGDHKKPKGKMSAYAFFAQTCREEHKKKNPEVPVNFVEFSKKCSEKRKTMSGKEKTKF 60

Query: 61  EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
           ++MAK DK  Y++EMK   P +G  KK   DPNA KRP S FFLFCSE+ PKIK  +PG+
Sbjct: 61  DEMAKVDKVHYDQEMKDNGPVEGGKKK---DPNALKRPLSGFFLFCSEFHPKIKSTNPGI 117

Query: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 180
           SIGD+AKKLGEMW N +  +KQPY  KAA LKEKYEKD+A Y++KGK D+AK       K
Sbjct: 118 SIGDMAKKLGEMWINYSDREKQPYITKAADLKEKYEKDVADYKSKGKFDSAK----GPTK 173

Query: 181 SKKKKEEEEDEEDEEDEEEEEDEEDEDE 208
              KK +E+D+EDEE+EEEEE++++E E
Sbjct: 174 IAWKKVKEKDKEDEEEEEEEEEKKEEGE 201


>gi|169216377 PREDICTED: similar to hCG1644442 [Homo sapiens]
          Length = 201

 Score =  259 bits (661), Expect = 2e-69
 Identities = 131/208 (62%), Positives = 160/208 (76%), Gaps = 7/208 (3%)

Query: 1   MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
           M +GD KKP+GKMS+YAFF QTCREEHKKK+P+  VNF EFSKKCSE+ KTMS KEK KF
Sbjct: 1   MAEGDHKKPKGKMSAYAFFAQTCREEHKKKNPEVPVNFVEFSKKCSEKRKTMSGKEKTKF 60

Query: 61  EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
           ++MAK DK  Y++EMK   P +G  KK   DPNA KRP S FFLFCSE+ PKIK  +PG+
Sbjct: 61  DEMAKVDKVHYDQEMKDNGPVEGGKKK---DPNALKRPLSGFFLFCSEFHPKIKSTNPGI 117

Query: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 180
           SIGD+AKKLGEMW N +  +KQPY  KAA LKEKYEKD+A Y++KGK D+AK       K
Sbjct: 118 SIGDMAKKLGEMWINYSDREKQPYITKAADLKEKYEKDVADYKSKGKFDSAK----GPTK 173

Query: 181 SKKKKEEEEDEEDEEDEEEEEDEEDEDE 208
              KK +E+D+EDEE+EEEEE++++E E
Sbjct: 174 IAWKKVKEKDKEDEEEEEEEEEKKEEGE 201


>gi|169216609 PREDICTED: hypothetical protein LOC203510 [Homo
           sapiens]
          Length = 201

 Score =  259 bits (661), Expect = 2e-69
 Identities = 131/208 (62%), Positives = 160/208 (76%), Gaps = 7/208 (3%)

Query: 1   MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
           M +GD KKP+GKMS+YAFF QTCREEHKKK+P+  VNF EFSKKCSE+ KTMS KEK KF
Sbjct: 1   MAEGDHKKPKGKMSAYAFFAQTCREEHKKKNPEVPVNFVEFSKKCSEKRKTMSGKEKTKF 60

Query: 61  EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
           ++MAK DK  Y++EMK   P +G  KK   DPNA KRP S FFLFCSE+ PKIK  +PG+
Sbjct: 61  DEMAKVDKVHYDQEMKDNGPVEGGKKK---DPNALKRPLSGFFLFCSEFHPKIKSTNPGI 117

Query: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 180
           SIGD+AKKLGEMW N +  +KQPY  KAA LKEKYEKD+A Y++KGK D+AK       K
Sbjct: 118 SIGDMAKKLGEMWINYSDREKQPYITKAADLKEKYEKDVADYKSKGKFDSAK----GPTK 173

Query: 181 SKKKKEEEEDEEDEEDEEEEEDEEDEDE 208
              KK +E+D+EDEE+EEEEE++++E E
Sbjct: 174 IAWKKVKEKDKEDEEEEEEEEEKKEEGE 201


>gi|169168462 PREDICTED: similar to high mobility group box 3 [Homo
           sapiens]
          Length = 204

 Score =  251 bits (642), Expect = 3e-67
 Identities = 131/195 (67%), Positives = 149/195 (76%), Gaps = 11/195 (5%)

Query: 1   MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
           M KGDPKKP+GKMS+Y FFVQTCREE KKK+P   VNF+EFSKKCSERWKTMS KEK KF
Sbjct: 1   MAKGDPKKPKGKMSAYVFFVQTCREECKKKNP---VNFAEFSKKCSERWKTMSGKEKSKF 57

Query: 61  EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
           ++MAK DK   +REMK   P KG  KKK  DP+APKRPPS FFLF SE RPKIK  +PG+
Sbjct: 58  DEMAKTDKVHCDREMKG--PAKGGKKKK--DPSAPKRPPSGFFLFSSEIRPKIKSTNPGI 113

Query: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 180
           SIGDVAKKLGEMWNN    +KQPY  K AKLKEKYEKD+A  ++KGK D +K    +  K
Sbjct: 114 SIGDVAKKLGEMWNNLNDSEKQPYITKTAKLKEKYEKDVADSKSKGKFDGSK----RPAK 169

Query: 181 SKKKKEEEEDEEDEE 195
              KK EEEDE++EE
Sbjct: 170 VAWKKVEEEDEDEEE 184


>gi|169168166 PREDICTED: similar to high mobility group box 3 [Homo
           sapiens]
          Length = 204

 Score =  251 bits (642), Expect = 3e-67
 Identities = 131/195 (67%), Positives = 149/195 (76%), Gaps = 11/195 (5%)

Query: 1   MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
           M KGDPKKP+GKMS+Y FFVQTCREE KKK+P   VNF+EFSKKCSERWKTMS KEK KF
Sbjct: 1   MAKGDPKKPKGKMSAYVFFVQTCREECKKKNP---VNFAEFSKKCSERWKTMSGKEKSKF 57

Query: 61  EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
           ++MAK DK   +REMK   P KG  KKK  DP+APKRPPS FFLF SE RPKIK  +PG+
Sbjct: 58  DEMAKTDKVHCDREMKG--PAKGGKKKK--DPSAPKRPPSGFFLFSSEIRPKIKSTNPGI 113

Query: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 180
           SIGDVAKKLGEMWNN    +KQPY  K AKLKEKYEKD+A  ++KGK D +K    +  K
Sbjct: 114 SIGDVAKKLGEMWNNLNDSEKQPYITKTAKLKEKYEKDVADSKSKGKFDGSK----RPAK 169

Query: 181 SKKKKEEEEDEEDEE 195
              KK EEEDE++EE
Sbjct: 170 VAWKKVEEEDEDEEE 184


>gi|113416897 PREDICTED: similar to high mobility group box 3
           isoform 1 [Homo sapiens]
          Length = 201

 Score =  251 bits (642), Expect = 3e-67
 Identities = 131/195 (67%), Positives = 149/195 (76%), Gaps = 11/195 (5%)

Query: 1   MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
           M KGDPKKP+GKMS+Y FFVQTCREE KKK+P   VNF+EFSKKCSERWKTMS KEK KF
Sbjct: 1   MAKGDPKKPKGKMSAYVFFVQTCREECKKKNP---VNFAEFSKKCSERWKTMSGKEKSKF 57

Query: 61  EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
           ++MAK DK   +REMK   P KG  KKK  DP+APKRPPS FFLF SE RPKIK  +PG+
Sbjct: 58  DEMAKTDKVHCDREMKG--PAKGGKKKK--DPSAPKRPPSGFFLFSSEIRPKIKSTNPGI 113

Query: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 180
           SIGDVAKKLGEMWNN    +KQPY  K AKLKEKYEKD+A  ++KGK D +K    +  K
Sbjct: 114 SIGDVAKKLGEMWNNLNDSEKQPYITKTAKLKEKYEKDVADSKSKGKFDGSK----RPAK 169

Query: 181 SKKKKEEEEDEEDEE 195
              KK EEEDE++EE
Sbjct: 170 VAWKKVEEEDEDEEE 184


>gi|239752318 PREDICTED: similar to hCG1647425 [Homo sapiens]
          Length = 214

 Score =  196 bits (498), Expect = 1e-50
 Identities = 97/125 (77%), Positives = 103/125 (82%), Gaps = 1/125 (0%)

Query: 65  KADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGD 124
           K D A YEREMK YIPPK ETK KF+DPNAPK PP AFF+F SE  PKIK EHPGLSI D
Sbjct: 34  KVDMAHYEREMKIYIPPKAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISD 92

Query: 125 VAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKK 184
           VAKKLGEMWN  A DDK PYEKKA KLKEKYEKDIAA+  KGKPDAAKKG +KAEK KKK
Sbjct: 93  VAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKK 152

Query: 185 KEEEE 189
           KEE++
Sbjct: 153 KEEDK 157



 Score = 36.6 bits (83), Expect = 0.017
 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 5/75 (6%)

Query: 5   DPKKPRGKMSSYAFFVQTCREEHK-KKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
           DP  P  K    AFF+ +  +  K K+HP  S+  S+ +KK  E W  ++  +K  +E  
Sbjct: 60  DPNAP--KSPPLAFFMFSSEDCPKIKEHPGLSI--SDVAKKLGEMWNYIAEDDKHPYEKK 115

Query: 64  AKADKARYEREMKTY 78
           A   K +YE+++  +
Sbjct: 116 AVKLKEKYEKDIAAF 130


>gi|239746826 PREDICTED: similar to hCG1647425 [Homo sapiens]
          Length = 214

 Score =  196 bits (498), Expect = 1e-50
 Identities = 97/125 (77%), Positives = 103/125 (82%), Gaps = 1/125 (0%)

Query: 65  KADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGD 124
           K D A YEREMK YIPPK ETK KF+DPNAPK PP AFF+F SE  PKIK EHPGLSI D
Sbjct: 34  KVDMAHYEREMKIYIPPKAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISD 92

Query: 125 VAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKK 184
           VAKKLGEMWN  A DDK PYEKKA KLKEKYEKDIAA+  KGKPDAAKKG +KAEK KKK
Sbjct: 93  VAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKK 152

Query: 185 KEEEE 189
           KEE++
Sbjct: 153 KEEDK 157



 Score = 36.6 bits (83), Expect = 0.017
 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 5/75 (6%)

Query: 5   DPKKPRGKMSSYAFFVQTCREEHK-KKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
           DP  P  K    AFF+ +  +  K K+HP  S+  S+ +KK  E W  ++  +K  +E  
Sbjct: 60  DPNAP--KSPPLAFFMFSSEDCPKIKEHPGLSI--SDVAKKLGEMWNYIAEDDKHPYEKK 115

Query: 64  AKADKARYEREMKTY 78
           A   K +YE+++  +
Sbjct: 116 AVKLKEKYEKDIAAF 130


>gi|239742753 PREDICTED: similar to high mobility group box 3
           isoform 2 [Homo sapiens]
          Length = 183

 Score =  194 bits (493), Expect = 5e-50
 Identities = 102/156 (65%), Positives = 116/156 (74%), Gaps = 8/156 (5%)

Query: 40  EFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPP 99
           EFSKKCSERWKTMS KEK KF++MAK DK   +REMK   P KG  KKK  DP+APKRPP
Sbjct: 19  EFSKKCSERWKTMSGKEKSKFDEMAKTDKVHCDREMKG--PAKGGKKKK--DPSAPKRPP 74

Query: 100 SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDI 159
           S FFLF SE RPKIK  +PG+SIGDVAKKLGEMWNN    +KQPY  K AKLKEKYEKD+
Sbjct: 75  SGFFLFSSEIRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKTAKLKEKYEKDV 134

Query: 160 AAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEE 195
           A  ++KGK D +K    +  K   KK EEEDE++EE
Sbjct: 135 ADSKSKGKFDGSK----RPAKVAWKKVEEEDEDEEE 166



 Score = 36.6 bits (83), Expect = 0.017
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 7/95 (7%)

Query: 3   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62
           K DP  P+   S +  F    R + K  +P  S+   + +KK  E W  ++  EK  +  
Sbjct: 64  KKDPSAPKRPPSGFFLFSSEIRPKIKSTNPGISIG--DVAKKLGEMWNNLNDSEKQPYIT 121

Query: 63  MAKADKARYEREMKTYIPPKGETKKKFKDPNAPKR 97
                K +YE+++        ++K KF     P +
Sbjct: 122 KTAKLKEKYEKDV-----ADSKSKGKFDGSKRPAK 151


>gi|239757817 PREDICTED: similar to hCG1647425 [Homo sapiens]
          Length = 227

 Score =  168 bits (425), Expect = 4e-42
 Identities = 83/108 (76%), Positives = 90/108 (83%), Gaps = 1/108 (0%)

Query: 82  KGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK 141
           + ETK KF+DPNAPK PP AFF+F SE  PKIK EHPGLSI DVAKKLGEMWN  A DDK
Sbjct: 78  RAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISDVAKKLGEMWNYIAEDDK 136

Query: 142 QPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEE 189
            PYEKKA KLKEKYEKDIAA+  KGKPDAAKKG +KAEK KKKKEE++
Sbjct: 137 HPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKKKEEDK 184



 Score = 36.6 bits (83), Expect = 0.017
 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 5/75 (6%)

Query: 5   DPKKPRGKMSSYAFFVQTCREEHK-KKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
           DP  P  K    AFF+ +  +  K K+HP  S+  S+ +KK  E W  ++  +K  +E  
Sbjct: 87  DPNAP--KSPPLAFFMFSSEDCPKIKEHPGLSI--SDVAKKLGEMWNYIAEDDKHPYEKK 142

Query: 64  AKADKARYEREMKTY 78
           A   K +YE+++  +
Sbjct: 143 AVKLKEKYEKDIAAF 157


>gi|57232750 HMG2 like isoform 1 [Homo sapiens]
          Length = 186

 Score =  151 bits (381), Expect = 5e-37
 Identities = 72/164 (43%), Positives = 107/164 (65%), Gaps = 4/164 (2%)

Query: 1   MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
           MGK    KP+  +SSY  F+   R + K++ P+  V F EFS+KCSE+W+++S  EK K+
Sbjct: 1   MGKEIQLKPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKY 60

Query: 61  EDMAKADKARYEREMKTYIPPKGETKKKFK-DPNAPKRPPSAFFLFCSEYRPKIKGEHPG 119
           E +AK DKARY+ EM  Y+   G+ KK+ K DP  P+RPPS+F LFC ++  ++K E+P 
Sbjct: 61  EALAKLDKARYQEEMMNYV---GKRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPN 117

Query: 120 LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYR 163
            S+  VAK  G+MW+     +K PYE++ A L+ KY +++  YR
Sbjct: 118 WSVVQVAKATGKMWSTATDLEKHPYEQRVALLRAKYFEELELYR 161



 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 95  PKRPPSAFFLFCSEYRPKIKGEHPGLSIG--DVAKKLGEMWNNTAADDKQPYEKKAAKLK 152
           PK   S++  F   YR K K + P   +G  + ++K  E W + +  +K  YE  A   K
Sbjct: 9   PKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLDK 68

Query: 153 EKYEKDIAAYRAKGK 167
            +Y++++  Y  K K
Sbjct: 69  ARYQEEMMNYVGKRK 83


>gi|4507241 structure specific recognition protein 1 [Homo sapiens]
          Length = 709

 Score = 93.2 bits (230), Expect = 1e-19
 Identities = 54/158 (34%), Positives = 89/158 (56%), Gaps = 11/158 (6%)

Query: 29  KKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKK 88
           ++  D +  F   +   S   +  S +++ K + + KA  A+  +  K     K    KK
Sbjct: 486 EEEEDVAEEFDSNASASSSSNEGDSDRDEKKRKQLKKAKMAKDRKSRK-----KPVEVKK 540

Query: 89  FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
            KDPNAPKRP SA+ L+ +  R KIK +HPG+SI D++KK GE+W   + + K+ +++KA
Sbjct: 541 GKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKA 600

Query: 149 AKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKE 186
              +  YEK +  Y   G+ +++K+     +KSKKKK+
Sbjct: 601 EDARRDYEKAMKEYEG-GRGESSKR-----DKSKKKKK 632



 Score = 64.7 bits (156), Expect = 6e-11
 Identities = 56/208 (26%), Positives = 88/208 (42%), Gaps = 41/208 (19%)

Query: 5   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
           DP  P+  MS+Y  ++   RE+ K  HP  S+  ++ SKK  E WK MS ++K +++  A
Sbjct: 543 DPNAPKRPMSAYMLWLNASREKIKSDHPGISI--TDLSKKAGEIWKGMSKEKKEEWDRKA 600

Query: 65  KADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGD 124
           +  +  YE+ MK Y   +GE+ K+ K     K               K+K E        
Sbjct: 601 EDARRDYEKAMKEYEGGRGESSKRDKSKKKKK--------------VKVKME-------- 638

Query: 125 VAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKK 184
             K      +++ +  +Q  E  + K KE    D +   + G+            KSKKK
Sbjct: 639 -KKSTPSRGSSSKSSSRQLSE--SFKSKEFVSSDES---SSGE-----------NKSKKK 681

Query: 185 KEEEEDEEDEEDEEEEEDEEDEDEEEDD 212
           +   ED E+EE        ED     D+
Sbjct: 682 RRRSEDSEEEELASTPPSSEDSASGSDE 709


>gi|115529449 upstream binding transcription factor, RNA polymerase
           I isoform b [Homo sapiens]
          Length = 727

 Score = 81.3 bits (199), Expect = 6e-16
 Identities = 58/192 (30%), Positives = 90/192 (46%), Gaps = 28/192 (14%)

Query: 49  WKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETK--KKFKDPNAPKRPP-SAFFLF 105
           W  M  KEK  +   A  D+ RYERE+     P   T   KK K    PK+PP + +  F
Sbjct: 482 WNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAATNSSKKMKFQGEPKKPPMNGYQKF 541

Query: 106 CSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYE--------- 156
             E      GE   L + +   ++G  W   +   K+ Y+K A + +++Y+         
Sbjct: 542 SQELLSN--GELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQKQYKVHLDLWVKS 599

Query: 157 ---KDIAAYRA----KGK-------PDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEED 202
              +D AAY+     K K       P+          KS+ ++++EEDE+DE+++EEEED
Sbjct: 600 LSPQDRAAYKEYISNKRKSMTKLRGPNPKSSRTTLQSKSESEEDDEEDEDDEDEDEEEED 659

Query: 203 EEDEDEEEDDDD 214
           +E+ D  ED  D
Sbjct: 660 DENGDSSEDGGD 671



 Score = 69.7 bits (169), Expect = 2e-12
 Identities = 55/194 (28%), Positives = 96/194 (49%), Gaps = 27/194 (13%)

Query: 2   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 61
           GKG  +KP+  +S+   F +  R + +++ P+ S   SE ++  +  W  +S K+K K++
Sbjct: 363 GKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSE--SELTRLLARMWNDLSEKKKAKYK 420

Query: 62  DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 121
               A KA+ ER+      P GE +++ K P +PKR           ++  + G++    
Sbjct: 421 AREAALKAQSERK------PGGEREERGKLPESPKRAEEI-------WQQSVIGDYLARF 467

Query: 122 IGDVAKKLGEM---WNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKA 178
             D  K L  M   WNN    +K  + KKAA+ +++YE++++  RA   P AA       
Sbjct: 468 KNDRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRA---PPAA------T 518

Query: 179 EKSKKKKEEEEDEE 192
             SKK K + E ++
Sbjct: 519 NSSKKMKFQGEPKK 532



 Score = 65.5 bits (158), Expect = 3e-11
 Identities = 47/172 (27%), Positives = 73/172 (42%), Gaps = 38/172 (22%)

Query: 45  CSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE---------------TKKKF 89
           CS++WK +S KEK  +       K  YE E+  ++    E                KK+ 
Sbjct: 291 CSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNINKKQA 350

Query: 90  KDPNA--------------PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNN 135
             P +              PKRP SA F+F  E R +++ E P LS  ++ + L  MWN+
Sbjct: 351 TSPASKKPAQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWND 410

Query: 136 TAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEE 187
            +   K  Y+ + A LK + E+         KP   ++   K  +S K+ EE
Sbjct: 411 LSEKKKAKYKAREAALKAQSER---------KPGGEREERGKLPESPKRAEE 453



 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 46/155 (29%), Positives = 72/155 (46%), Gaps = 12/155 (7%)

Query: 36  VNFSEFS-KKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNA 94
           V F +FS   C  +W  +S  E  KF  + +      E     Y   KG  KK  K P+ 
Sbjct: 58  VAFKDFSGDMCKLKWVEIS-NEVRKFRTLTELILDAQEHVKNPY---KG--KKLKKHPDF 111

Query: 95  PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEK 154
           PK+P + +F F  E R K    HP +S  D+ K L + +       K  Y +   + K++
Sbjct: 112 PKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQE 171

Query: 155 YEKDIAAYRAKGKPDA---AKKGVVKAEKSKKKKE 186
           +E+++A +R +  PD    AKK  +  EK K  ++
Sbjct: 172 FERNLARFR-EDHPDLIQNAKKSDI-PEKPKTPQQ 204



 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 47/221 (21%), Positives = 98/221 (44%), Gaps = 23/221 (10%)

Query: 3   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62
           K  P  P+  ++ Y  F    R ++ K HP+ S    + +K  S+++K +  K+K K+  
Sbjct: 106 KKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSN--LDLTKILSKKYKELPEKKKMKYIQ 163

Query: 63  MAKADKARYEREMKTYI---PPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPG 119
             + +K  +ER +  +    P   +  KK   P  PK P   ++    +   K++   P 
Sbjct: 164 DFQREKQEFERNLARFREDHPDLIQNAKKSDIPEKPKTPQQLWYTHEKKVYLKVR---PD 220

Query: 120 LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYE--------KDIAAYRA------K 165
             + D  +K  E+  +     K    K   +LK+K++           + Y A      K
Sbjct: 221 EIMRDYIQKHPELNISEEGITKSTLTKAERQLKDKFDGRPTKPPPNSYSLYCAELMANMK 280

Query: 166 GKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEEDE 206
             P + ++ V+ +++ K   ++E+D   ++ +++++D E E
Sbjct: 281 DVP-STERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVE 320


>gi|115529451 upstream binding transcription factor, RNA polymerase
           I isoform b [Homo sapiens]
          Length = 727

 Score = 81.3 bits (199), Expect = 6e-16
 Identities = 58/192 (30%), Positives = 90/192 (46%), Gaps = 28/192 (14%)

Query: 49  WKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETK--KKFKDPNAPKRPP-SAFFLF 105
           W  M  KEK  +   A  D+ RYERE+     P   T   KK K    PK+PP + +  F
Sbjct: 482 WNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAATNSSKKMKFQGEPKKPPMNGYQKF 541

Query: 106 CSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYE--------- 156
             E      GE   L + +   ++G  W   +   K+ Y+K A + +++Y+         
Sbjct: 542 SQELLSN--GELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQKQYKVHLDLWVKS 599

Query: 157 ---KDIAAYRA----KGK-------PDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEED 202
              +D AAY+     K K       P+          KS+ ++++EEDE+DE+++EEEED
Sbjct: 600 LSPQDRAAYKEYISNKRKSMTKLRGPNPKSSRTTLQSKSESEEDDEEDEDDEDEDEEEED 659

Query: 203 EEDEDEEEDDDD 214
           +E+ D  ED  D
Sbjct: 660 DENGDSSEDGGD 671



 Score = 69.7 bits (169), Expect = 2e-12
 Identities = 55/194 (28%), Positives = 96/194 (49%), Gaps = 27/194 (13%)

Query: 2   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 61
           GKG  +KP+  +S+   F +  R + +++ P+ S   SE ++  +  W  +S K+K K++
Sbjct: 363 GKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSE--SELTRLLARMWNDLSEKKKAKYK 420

Query: 62  DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 121
               A KA+ ER+      P GE +++ K P +PKR           ++  + G++    
Sbjct: 421 AREAALKAQSERK------PGGEREERGKLPESPKRAEEI-------WQQSVIGDYLARF 467

Query: 122 IGDVAKKLGEM---WNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKA 178
             D  K L  M   WNN    +K  + KKAA+ +++YE++++  RA   P AA       
Sbjct: 468 KNDRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRA---PPAA------T 518

Query: 179 EKSKKKKEEEEDEE 192
             SKK K + E ++
Sbjct: 519 NSSKKMKFQGEPKK 532



 Score = 65.5 bits (158), Expect = 3e-11
 Identities = 47/172 (27%), Positives = 73/172 (42%), Gaps = 38/172 (22%)

Query: 45  CSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE---------------TKKKF 89
           CS++WK +S KEK  +       K  YE E+  ++    E                KK+ 
Sbjct: 291 CSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNINKKQA 350

Query: 90  KDPNA--------------PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNN 135
             P +              PKRP SA F+F  E R +++ E P LS  ++ + L  MWN+
Sbjct: 351 TSPASKKPAQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWND 410

Query: 136 TAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEE 187
            +   K  Y+ + A LK + E+         KP   ++   K  +S K+ EE
Sbjct: 411 LSEKKKAKYKAREAALKAQSER---------KPGGEREERGKLPESPKRAEE 453



 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 46/155 (29%), Positives = 72/155 (46%), Gaps = 12/155 (7%)

Query: 36  VNFSEFS-KKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNA 94
           V F +FS   C  +W  +S  E  KF  + +      E     Y   KG  KK  K P+ 
Sbjct: 58  VAFKDFSGDMCKLKWVEIS-NEVRKFRTLTELILDAQEHVKNPY---KG--KKLKKHPDF 111

Query: 95  PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEK 154
           PK+P + +F F  E R K    HP +S  D+ K L + +       K  Y +   + K++
Sbjct: 112 PKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQE 171

Query: 155 YEKDIAAYRAKGKPDA---AKKGVVKAEKSKKKKE 186
           +E+++A +R +  PD    AKK  +  EK K  ++
Sbjct: 172 FERNLARFR-EDHPDLIQNAKKSDI-PEKPKTPQQ 204



 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 47/221 (21%), Positives = 98/221 (44%), Gaps = 23/221 (10%)

Query: 3   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62
           K  P  P+  ++ Y  F    R ++ K HP+ S    + +K  S+++K +  K+K K+  
Sbjct: 106 KKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSN--LDLTKILSKKYKELPEKKKMKYIQ 163

Query: 63  MAKADKARYEREMKTYI---PPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPG 119
             + +K  +ER +  +    P   +  KK   P  PK P   ++    +   K++   P 
Sbjct: 164 DFQREKQEFERNLARFREDHPDLIQNAKKSDIPEKPKTPQQLWYTHEKKVYLKVR---PD 220

Query: 120 LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYE--------KDIAAYRA------K 165
             + D  +K  E+  +     K    K   +LK+K++           + Y A      K
Sbjct: 221 EIMRDYIQKHPELNISEEGITKSTLTKAERQLKDKFDGRPTKPPPNSYSLYCAELMANMK 280

Query: 166 GKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEEDE 206
             P + ++ V+ +++ K   ++E+D   ++ +++++D E E
Sbjct: 281 DVP-STERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVE 320


>gi|7657671 upstream binding transcription factor, RNA polymerase I
           isoform a [Homo sapiens]
          Length = 764

 Score = 81.3 bits (199), Expect = 6e-16
 Identities = 58/192 (30%), Positives = 90/192 (46%), Gaps = 28/192 (14%)

Query: 49  WKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETK--KKFKDPNAPKRPP-SAFFLF 105
           W  M  KEK  +   A  D+ RYERE+     P   T   KK K    PK+PP + +  F
Sbjct: 519 WNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAATNSSKKMKFQGEPKKPPMNGYQKF 578

Query: 106 CSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYE--------- 156
             E      GE   L + +   ++G  W   +   K+ Y+K A + +++Y+         
Sbjct: 579 SQELLSN--GELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQKQYKVHLDLWVKS 636

Query: 157 ---KDIAAYRA----KGK-------PDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEED 202
              +D AAY+     K K       P+          KS+ ++++EEDE+DE+++EEEED
Sbjct: 637 LSPQDRAAYKEYISNKRKSMTKLRGPNPKSSRTTLQSKSESEEDDEEDEDDEDEDEEEED 696

Query: 203 EEDEDEEEDDDD 214
           +E+ D  ED  D
Sbjct: 697 DENGDSSEDGGD 708



 Score = 69.7 bits (169), Expect = 2e-12
 Identities = 55/194 (28%), Positives = 96/194 (49%), Gaps = 27/194 (13%)

Query: 2   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 61
           GKG  +KP+  +S+   F +  R + +++ P+ S   SE ++  +  W  +S K+K K++
Sbjct: 400 GKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSE--SELTRLLARMWNDLSEKKKAKYK 457

Query: 62  DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 121
               A KA+ ER+      P GE +++ K P +PKR           ++  + G++    
Sbjct: 458 AREAALKAQSERK------PGGEREERGKLPESPKRAEEI-------WQQSVIGDYLARF 504

Query: 122 IGDVAKKLGEM---WNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKA 178
             D  K L  M   WNN    +K  + KKAA+ +++YE++++  RA   P AA       
Sbjct: 505 KNDRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRA---PPAA------T 555

Query: 179 EKSKKKKEEEEDEE 192
             SKK K + E ++
Sbjct: 556 NSSKKMKFQGEPKK 569



 Score = 65.5 bits (158), Expect = 3e-11
 Identities = 47/172 (27%), Positives = 73/172 (42%), Gaps = 38/172 (22%)

Query: 45  CSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE---------------TKKKF 89
           CS++WK +S KEK  +       K  YE E+  ++    E                KK+ 
Sbjct: 328 CSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNINKKQA 387

Query: 90  KDPNA--------------PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNN 135
             P +              PKRP SA F+F  E R +++ E P LS  ++ + L  MWN+
Sbjct: 388 TSPASKKPAQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWND 447

Query: 136 TAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEE 187
            +   K  Y+ + A LK + E+         KP   ++   K  +S K+ EE
Sbjct: 448 LSEKKKAKYKAREAALKAQSER---------KPGGEREERGKLPESPKRAEE 490



 Score = 55.5 bits (132), Expect = 3e-08
 Identities = 41/188 (21%), Positives = 90/188 (47%), Gaps = 9/188 (4%)

Query: 3   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62
           K  P  P+  ++ Y  F    R ++ K HP+ S    + +K  S+++K +  K+K K+  
Sbjct: 106 KKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSN--LDLTKILSKKYKELPEKKKMKYIQ 163

Query: 63  MAKADKARYEREMKTYI---PPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPG 119
             + +K  +ER +  +    P   +  KK   P  PK P   ++    +   K++   P 
Sbjct: 164 DFQREKQEFERNLARFREDHPDLIQNAKKSDIPEKPKTPQQLWYTHEKKVYLKVR---PD 220

Query: 120 LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK-GKPDAAKKGVVKA 178
            +  +V   LG+ W+  +   +  +  KA + +++YE+ +  Y  K  + + +++G+ K+
Sbjct: 221 ATTKEVKDSLGKQWSQLSDKKRLKWIHKALEQRKEYEEIMRDYIQKHPELNISEEGITKS 280

Query: 179 EKSKKKKE 186
             +K +++
Sbjct: 281 TLTKAERQ 288



 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 46/155 (29%), Positives = 72/155 (46%), Gaps = 12/155 (7%)

Query: 36  VNFSEFS-KKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNA 94
           V F +FS   C  +W  +S  E  KF  + +      E     Y   KG  KK  K P+ 
Sbjct: 58  VAFKDFSGDMCKLKWVEIS-NEVRKFRTLTELILDAQEHVKNPY---KG--KKLKKHPDF 111

Query: 95  PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEK 154
           PK+P + +F F  E R K    HP +S  D+ K L + +       K  Y +   + K++
Sbjct: 112 PKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQE 171

Query: 155 YEKDIAAYRAKGKPDA---AKKGVVKAEKSKKKKE 186
           +E+++A +R +  PD    AKK  +  EK K  ++
Sbjct: 172 FERNLARFR-EDHPDLIQNAKKSDI-PEKPKTPQQ 204



 Score = 45.4 bits (106), Expect = 4e-05
 Identities = 39/175 (22%), Positives = 73/175 (41%), Gaps = 25/175 (14%)

Query: 24  REEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPP-- 81
           ++ + K  PDA+    E      ++W  +S K++ K+   A   +  YE  M+ YI    
Sbjct: 211 KKVYLKVRPDATTK--EVKDSLGKQWSQLSDKKRLKWIHKALEQRKEYEEIMRDYIQKHP 268

Query: 82  ---------------KGETKKKFKDPNAP-KRPPSAFFLFCSEYRPKIKGEHPGLSIGDV 125
                          K E + K K    P K PP+++ L+C+E    +K     +   + 
Sbjct: 269 ELNISEEGITKSTLTKAERQLKDKFDGRPTKPPPNSYSLYCAELMANMK----DVPSTER 324

Query: 126 AKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 180
                + W   +  +K  Y KK  + K+ YE ++  +  +  P+  ++ V+  EK
Sbjct: 325 MVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRF-LESLPEEEQQRVLGEEK 378


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.304    0.126    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,562,785
Number of Sequences: 37866
Number of extensions: 595130
Number of successful extensions: 48698
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1334
Number of HSP's successfully gapped in prelim test: 315
Number of HSP's that attempted gapping in prelim test: 9560
Number of HSP's gapped (non-prelim): 16150
length of query: 215
length of database: 18,247,518
effective HSP length: 98
effective length of query: 117
effective length of database: 14,536,650
effective search space: 1700788050
effective search space used: 1700788050
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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