Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TYMP Sequence: fasta or formatted (482aa) NCBI GI: 4503445
Description:

endothelial cell growth factor 1 (platelet-derived) precursor

Referenced in:

Platelets and Megakaryocytes
Pyrimidine Biosynthesis and Catabolism

Other entries for this name:
alt mRNA [482aa] endothelial cell growth factor 1 (platelet-derived) precursor
alt mRNA [482aa] endothelial cell growth factor 1 (platelet-derived) precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.7         66           3
 C cysteine            1.5          7           2
 D aspartate           5.0         24           2
 E glutamate           5.8         28           2
 F phenylalanine       1.7          8           1
 G glycine            11.8         57           2
 H histidine           1.2          6           1
 I isoleucine          2.3         11           1
 K lysine              2.3         11           2
 L leucine            14.5         70           2
 M methionine          2.3         11           1
 N asparagine          0.6          3           1
 P proline             7.1         34           2
 Q glutamine           5.8         28           2
 R arginine            6.6         32           2
 S serine              5.6         27           1
 T threonine           3.5         17           2
 V valine              7.7         37           2
 W tryptophan          0.8          4           1
 Y tyrosine            0.2          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   endothelial cell growth factor 1 (platelet-derived) p... 
TYMP                  1.000   endothelial cell growth factor 1 (platelet-derived)...
TYMP                  1.000   endothelial cell growth factor 1 (platelet-derived)...
NOTCH4                0.012   notch4 preproprotein 
RSPH4A                0.011   radial spoke head 4 homolog A isoform 2 
RSPH4A                0.011   radial spoke head 4 homolog A isoform 1 
DMRTA1                0.009   DMRT-like family A1 
CBX6                  0.009   chromobox homolog 6 
FAM114A2              0.008   hypothetical protein LOC10827 
ProSAPiP1             0.008   ProSAPiP1 protein 
COL4A4                0.008   alpha 4 type IV collagen precursor 
ASPG                  0.008   60 kDa lysophospholipase 
LOC100128960          0.007   PREDICTED: similar to paraneoplastic antigen MA2 [H...
LOC100128960          0.007   PREDICTED: similar to Putative paraneoplastic antig...
MON1B                 0.007   MON1 homolog B 
LOC100128328          0.007   PREDICTED: hypothetical protein 
LOC100128328          0.007   PREDICTED: hypothetical protein 
SIX5                  0.007   sine oculis homeobox homolog 5 
COL7A1                0.005   alpha 1 type VII collagen precursor 
SMARCA2               0.005   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.005   SWI/SNF-related matrix-associated actin-dependent re...
CPSF1                 0.005   cleavage and polyadenylation specific factor 1, 160k...
HIVEP2                0.005   human immunodeficiency virus type I enhancer bindin...
UBTD2                 0.005   dendritic cell-derived ubiquitin-like protein [Homo...
RTKN                  0.005   rhotekin isoform c 
RTKN                  0.005   rhotekin isoform a 
RTKN                  0.005   rhotekin isoform b 
COL8A2                0.005   collagen, type VIII, alpha 2 
COL11A2               0.005   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.005   collagen, type XI, alpha 2 isoform 3 preproprotein ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press