CPSF1 33146

Name: CPSF1	Sequence: fasta or formatted (1443aa)		NCBI GI: 56676371
Description: cleavage and polyadenylation specific factor 1, 160kDa		Referenced in: Polyadenylation Capping and Splicing
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.1 103 3 C cysteine 1.5 22 1 D aspartate 4.6 67 3 E glutamate 7.5 108 3 F phenylalanine 4.1 59 2 G glycine 7.3 105 3 H histidine 2.7 39 2 I isoleucine 4.2 61 2 K lysine 4.3 62 3 L leucine 10.7 155 3 M methionine 2.4 34 1 N asparagine 3.1 45 2 P proline 5.8 84 2 Q glutamine 3.7 54 2 R arginine 6.2 90 2 S serine 6.7 97 2 T threonine 5.8 83 2 V valine 7.8 113 3 W tryptophan 1.0 14 1 Y tyrosine 3.3 48 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 cleavage and polyadenylation specific factor 1, 160k... LOC100290337 0.021 PREDICTED: hypothetical protein XP_002347285 DDB1 0.021 damage-specific DNA binding protein 1 SF3B3 0.018 splicing factor 3b, subunit 3 HOXC11 0.004 homeobox C11 NFKBIL1 0.003 nuclear factor of kappa light polypeptide gene enha... NFKBIL1 0.003 nuclear factor of kappa light polypeptide gene enha... NFKBIL1 0.003 nuclear factor of kappa light polypeptide gene enha... NFKBIL1 0.003 nuclear factor of kappa light polypeptide gene enha... FMOD 0.003 fibromodulin precursor FIP1L1 0.002 FIP1 like 1 isoform 3 FIP1L1 0.002 FIP1 like 1 isoform 2 GAB3 0.002 Gab3 protein isoform 1 GAB3 0.002 Gab3 protein isoform 2 SLC9A5 0.002 solute carrier family 9 (sodium/hydrogen exchanger), ... TPR 0.002 nuclear pore complex-associated protein TPR NIN 0.002 ninein isoform 4 NIN 0.002 ninein isoform 5 NIN 0.002 ninein isoform 1 NIN 0.002 ninein isoform 2 NACAD 0.002 NAC alpha domain containing NACAD 0.002 PREDICTED: NAC alpha domain containing NACAD 0.002 PREDICTED: NAC alpha domain containing NACAD 0.002 PREDICTED: NAC alpha domain containing NACAD 0.002 PREDICTED: NAC alpha domain containing Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.