Search of human proteins with 4502559

Search of human proteins with 4502559

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4502559 calcium modulating ligand [Homo sapiens]
         (296 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4502559 calcium modulating ligand [Homo sapiens]                   584   e-167
gi|61097912 nucleolar protein with MIF4G domain 1 [Homo sapiens]       33   0.39 
gi|148746195 trichohyalin [Homo sapiens]                               32   0.67 
gi|111185957 downstream of tyrosine kinase 7 [Homo sapiens]            31   1.1  
gi|57242774 hypothetical protein LOC9703 [Homo sapiens]                30   1.9  
gi|33286442 BCL6 co-repressor-like 1 [Homo sapiens]                    30   1.9  
gi|13994236 cat eye syndrome chromosome region, candidate 6 isof...    30   2.5  
gi|11993943 Tax1 binding protein 3 [Homo sapiens]                      30   2.5  
gi|134152674 rabaptin, RAB GTPase binding effector protein 1 iso...    30   2.5  
gi|31377798 rabaptin, RAB GTPase binding effector protein 1 isof...    30   2.5  
gi|22035606 mitogen-activated protein kinase kinase kinase kinas...    30   3.3  
gi|22035602 mitogen-activated protein kinase kinase kinase kinas...    30   3.3  
gi|22035604 mitogen-activated protein kinase kinase kinase kinas...    30   3.3  
gi|46094070 hypothetical protein LOC80097 [Homo sapiens]               30   3.3  
gi|54144654 rhomboid protease 2 [Homo sapiens]                         29   4.3  
gi|111120331 PHD finger protein 20-like 1 isoform 1 [Homo sapiens]     29   4.3  
gi|145976946 hypothetical protein LOC653784 [Homo sapiens]             29   5.7  
gi|93102364 SWAP-70 protein [Homo sapiens]                             28   7.4  
gi|51972208 leucine, glutamate and lysine rich 1 [Homo sapiens]        28   7.4  
gi|218931148 neuronal tropomodulin isoform b [Homo sapiens]            28   9.7  
gi|21361831 partitioning-defective protein 3 homolog [Homo sapiens]    28   9.7  
gi|214010216 SMC6 protein [Homo sapiens]                               28   9.7  
gi|13375848 SMC6 protein [Homo sapiens]                                28   9.7  
gi|27262622 neuron navigator 1 [Homo sapiens]                          28   9.7  

>gi|4502559 calcium modulating ligand [Homo sapiens]
          Length = 296

 Score =  584 bits (1506), Expect = e-167
 Identities = 296/296 (100%), Positives = 296/296 (100%)

Query: 1   MESMAVATDGGERPGVPAGSGLSASQRRAELRRRKLLMNSEQRINRIMGFHRPGSGAEEE 60
           MESMAVATDGGERPGVPAGSGLSASQRRAELRRRKLLMNSEQRINRIMGFHRPGSGAEEE
Sbjct: 1   MESMAVATDGGERPGVPAGSGLSASQRRAELRRRKLLMNSEQRINRIMGFHRPGSGAEEE 60

Query: 61  SQTKSKQQDSDKLNSLSVPSVSKRVVLGDSVSTGTTDQQGGVAEVKGTQLGDKLDSFIKP 120
           SQTKSKQQDSDKLNSLSVPSVSKRVVLGDSVSTGTTDQQGGVAEVKGTQLGDKLDSFIKP
Sbjct: 61  SQTKSKQQDSDKLNSLSVPSVSKRVVLGDSVSTGTTDQQGGVAEVKGTQLGDKLDSFIKP 120

Query: 121 PECSSDVNLELRQRNRGDLTADSVQRGSRHGLEQYLSRFEEAMKLRKQLISEKPSQEDGN 180
           PECSSDVNLELRQRNRGDLTADSVQRGSRHGLEQYLSRFEEAMKLRKQLISEKPSQEDGN
Sbjct: 121 PECSSDVNLELRQRNRGDLTADSVQRGSRHGLEQYLSRFEEAMKLRKQLISEKPSQEDGN 180

Query: 181 TTEEFDSFRIFRLVGCALLALGVRAFVCKYLSIFAPFLTLQLAYMGLYKYFPKSEKKIKT 240
           TTEEFDSFRIFRLVGCALLALGVRAFVCKYLSIFAPFLTLQLAYMGLYKYFPKSEKKIKT
Sbjct: 181 TTEEFDSFRIFRLVGCALLALGVRAFVCKYLSIFAPFLTLQLAYMGLYKYFPKSEKKIKT 240

Query: 241 TVLTAALLLSGIPAEVINRSMDTYSKMGEVFTDLCVYFFTFIFCHELLDYWGSEVP 296
           TVLTAALLLSGIPAEVINRSMDTYSKMGEVFTDLCVYFFTFIFCHELLDYWGSEVP
Sbjct: 241 TVLTAALLLSGIPAEVINRSMDTYSKMGEVFTDLCVYFFTFIFCHELLDYWGSEVP 296


>gi|61097912 nucleolar protein with MIF4G domain 1 [Homo sapiens]
          Length = 860

 Score = 32.7 bits (73), Expect = 0.39
 Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 14/83 (16%)

Query: 1   MESMAVATDGGERPGVPAGSGLSASQR------RAELRRRKLLMNSEQRINRIMGFHR-P 53
           +E    AT  GE PG   G G   S R      R ELR+ K  +   +R+ R  G  + P
Sbjct: 49  VEEFVHATSEGEAPGGCEGRGAPVSFRPGGRKSRKELRKEKRHLRKARRLQRTAGPEQGP 108

Query: 54  G----SGAEEESQTKSKQQDSDK 72
           G    SGAEE S     +QD+++
Sbjct: 109 GLGGRSGAEEAS---GHRQDTEE 128


>gi|148746195 trichohyalin [Homo sapiens]
          Length = 1943

 Score = 32.0 bits (71), Expect = 0.67
 Identities = 35/160 (21%), Positives = 67/160 (41%), Gaps = 10/160 (6%)

Query: 27  RRAELRRRKLLMNSEQRINRIMGFHRPGS--GAEEESQTKSKQQDSDKLNSLSVPSVSKR 84
           RR +  RR+  +  EQ++ R     R       +EE + + K +   +   L      +R
Sbjct: 396 RREQQLRREQQLRREQQLRREQQLRREQQLRREQEEERHEQKHEQERREQRLKREQEERR 455

Query: 85  VVLGDSVSTGTTDQQGGVAEVKGTQLGDKLDSFIKPPECSSDVNLELRQRNRGDLTADSV 144
             L     T   +Q+    ++K  Q  ++ + ++K  E   +   E ++R    L  +  
Sbjct: 456 DWLKREEETERHEQERRKQQLKRDQEEERRERWLKLEE---EERREQQERREQQLRREQE 512

Query: 145 QRGSRHGLEQYLSRFEEAMKLRKQLISEKPSQEDGNTTEE 184
           +R      EQ L R EE  +L+++L SE+  + +     E
Sbjct: 513 ER-----REQRLKRQEEEERLQQRLRSEQQLRREQEERRE 547


>gi|111185957 downstream of tyrosine kinase 7 [Homo sapiens]
          Length = 504

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 5/112 (4%)

Query: 11  GERPGVPAGSGLSASQRRAELRRRKL-LMNSEQRINRIMGFHRPGSGAEEESQTKSKQQD 69
           G RP +P  S    S     + +  L  +  E+R++ +    RPGSG ++ S + S    
Sbjct: 211 GLRPVLPDPSPPGPSTVEERVAQEALETLQLEKRLSLLSHAGRPGSGGDDRSLSSS---- 266

Query: 70  SDKLNSLSVPSVSKRVVLGDSVSTGTTDQQGGVAEVKGTQLGDKLDSFIKPP 121
           S + + L V + S+     +  S+  +  Q G         G+ +    +PP
Sbjct: 267 SSEASHLDVSASSRLTAWPEQSSSSASTSQEGPRPAAAQAAGEAMVGASRPP 318


>gi|57242774 hypothetical protein LOC9703 [Homo sapiens]
          Length = 2235

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 8/97 (8%)

Query: 40   SEQRINRIMGFHRPGSGAEEESQTKSKQQDSDKLNSLSVPSVSKR--VVLGDSVSTGTTD 97
            + Q  +R+MGF  PG   E++      ++D  KL +  +P V  R  +   D+V  G   
Sbjct: 2018 THQFFHRMMGFFFPGRSVEDDE--VGDEEDKSKLVTTGIPVVKPRQLIATDDAVPLGPGK 2075

Query: 98   QQGGVAEVKGTQLGDKLDSFIKPPECSSDVNLELRQR 134
               GVA+      G +  SF K PE   D   ++++R
Sbjct: 2076 ---GVAQGLTRSSGVR-RSFRKSPEHPVDDIDKMKER 2108


>gi|33286442 BCL6 co-repressor-like 1 [Homo sapiens]
          Length = 1711

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 39   NSEQRINRIMGFHRPGSGAEEESQTKSKQQDSDKLNSLSVPSVSK-RVVLGDSVSTGTTD 97
            +S +  N + G H+     + ESQ+  K+ DS +  SL   + S  R  +   +ST T  
Sbjct: 1168 DSGKEHNGVRGKHKHRKPTKPESQSPGKRADSHEEGSLEKKAKSSFRDFIPVVLSTRTRS 1227

Query: 98   QQGGV-AEVKGTQLGDKLDSFIKPPECSSDVNLELRQRNRGDLTADSVQRGSRHGLEQYL 156
            Q G + +   G    D     + P E   +V     +R +   T    Q  S H  ++ L
Sbjct: 1228 QSGSICSSFAGMADSDMGSQEVFPTEEEEEVTPTPAKRRKVRKTQRDTQYRSHHAQDKSL 1287


>gi|13994236 cat eye syndrome chromosome region, candidate 6 isoform
           a [Homo sapiens]
          Length = 578

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 15/46 (32%), Positives = 22/46 (47%)

Query: 49  GFHRPGSGAEEESQTKSKQQDSDKLNSLSVPSVSKRVVLGDSVSTG 94
           G  R G G    S T ++++D D+  S+S P V    +LG     G
Sbjct: 58  GGRRGGGGGSPSSSTGAEREDDDESLSVSKPLVPNAALLGPPAQVG 103


>gi|11993943 Tax1 binding protein 3 [Homo sapiens]
          Length = 124

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 24/96 (25%)

Query: 19  GSGLSASQRRAELRRRKLLMNSEQRINRIMGFHRPGSGAEEESQTKSKQQDSDKLNSLSV 78
           G  ++A  +R E+ + +      Q  N I+GF   G   ++ SQ    +  +DK   + V
Sbjct: 6   GQPVTAVVQRVEIHKLR------QGENLILGFSIGGGIDQDPSQNPFSEDKTDK--GIYV 57

Query: 79  PSVSKRVVLGDSVSTGTTDQQGGVAEVKGTQLGDKL 114
             VS                +GG AE+ G Q+GDK+
Sbjct: 58  TRVS----------------EGGPAEIAGLQIGDKI 77


>gi|134152674 rabaptin, RAB GTPase binding effector protein 1
           isoform 2 [Homo sapiens]
          Length = 829

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 33/147 (22%), Positives = 62/147 (42%), Gaps = 36/147 (24%)

Query: 23  SASQRRAELRRRKLLMNSEQRINRIMGFHRPGSGAEEESQTKSKQQDSDKLNSLSVPSVS 82
           SA +  A+LRRR      E+ +               E++ K  Q+D++KL S+ +P   
Sbjct: 149 SAEREIADLRRRLSEGQEEENL---------------ENEMKKAQEDAEKLRSVVMPMEK 193

Query: 83  KRVVLGDSVSTGTTDQQGGVAEVKGTQLGDKLDSFIKPPECSSDVNLELRQRNRGDLTAD 142
           +   L D +    T+ +  + E++ +++ +          C +D+ + +   N    T  
Sbjct: 194 EIAALKDKL----TEAEDKIKELEASKVKELNHYLEAEKSCRTDLEMYVAVLN----TQK 245

Query: 143 SVQRGSRHGLEQYLSRFEEAMKLRKQL 169
           SV +             E+A KLRK+L
Sbjct: 246 SVLQ-------------EDAEKLRKEL 259


>gi|31377798 rabaptin, RAB GTPase binding effector protein 1 isoform
           1 [Homo sapiens]
          Length = 862

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 33/147 (22%), Positives = 62/147 (42%), Gaps = 36/147 (24%)

Query: 23  SASQRRAELRRRKLLMNSEQRINRIMGFHRPGSGAEEESQTKSKQQDSDKLNSLSVPSVS 82
           SA +  A+LRRR      E+ +               E++ K  Q+D++KL S+ +P   
Sbjct: 149 SAEREIADLRRRLSEGQEEENL---------------ENEMKKAQEDAEKLRSVVMPMEK 193

Query: 83  KRVVLGDSVSTGTTDQQGGVAEVKGTQLGDKLDSFIKPPECSSDVNLELRQRNRGDLTAD 142
           +   L D +    T+ +  + E++ +++ +          C +D+ + +   N    T  
Sbjct: 194 EIAALKDKL----TEAEDKIKELEASKVKELNHYLEAEKSCRTDLEMYVAVLN----TQK 245

Query: 143 SVQRGSRHGLEQYLSRFEEAMKLRKQL 169
           SV +             E+A KLRK+L
Sbjct: 246 SVLQ-------------EDAEKLRKEL 259


>gi|22035606 mitogen-activated protein kinase kinase kinase kinase 4
           isoform 3 [Homo sapiens]
          Length = 1212

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 35/135 (25%), Positives = 48/135 (35%), Gaps = 26/135 (19%)

Query: 52  RPGSGAEEESQTKSKQQDSDKLNSLSVPSVSKRVVLGDSVSTGTTDQQGGVAEVKGTQLG 111
           RPGSG+   S     Q  S   +     S  +  V   S S G+  Q             
Sbjct: 644 RPGSGSSSGSSNSGSQPGSHPGSQSG--SGERFRVRSSSKSEGSPSQ------------- 688

Query: 112 DKLDSFIKPPECSSDVNLELRQRNRGDLTADSVQRGSRHGLEQYLSRFEEAMKLRKQLIS 171
            +L++ +K PE   +V   L+     DLTA          L + L   E+     K    
Sbjct: 689 -RLENAVKKPEDKKEVFRPLKPAGEVDLTA----------LAKELRAVEDVRPPHKVTDY 737

Query: 172 EKPSQEDGNTTEEFD 186
              S+E G T EE D
Sbjct: 738 SSSSEESGTTDEEDD 752


>gi|22035602 mitogen-activated protein kinase kinase kinase kinase 4
           isoform 1 [Homo sapiens]
          Length = 1166

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 35/135 (25%), Positives = 48/135 (35%), Gaps = 26/135 (19%)

Query: 52  RPGSGAEEESQTKSKQQDSDKLNSLSVPSVSKRVVLGDSVSTGTTDQQGGVAEVKGTQLG 111
           RPGSG+   S     Q  S   +     S  +  V   S S G+  Q             
Sbjct: 590 RPGSGSSSGSSNSGSQPGSHPGSQSG--SGERFRVRSSSKSEGSPSQ------------- 634

Query: 112 DKLDSFIKPPECSSDVNLELRQRNRGDLTADSVQRGSRHGLEQYLSRFEEAMKLRKQLIS 171
            +L++ +K PE   +V   L+     DLTA          L + L   E+     K    
Sbjct: 635 -RLENAVKKPEDKKEVFRPLKPAGEVDLTA----------LAKELRAVEDVRPPHKVTDY 683

Query: 172 EKPSQEDGNTTEEFD 186
              S+E G T EE D
Sbjct: 684 SSSSEESGTTDEEDD 698


>gi|22035604 mitogen-activated protein kinase kinase kinase kinase 4
           isoform 2 [Homo sapiens]
          Length = 1320

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 35/135 (25%), Positives = 48/135 (35%), Gaps = 26/135 (19%)

Query: 52  RPGSGAEEESQTKSKQQDSDKLNSLSVPSVSKRVVLGDSVSTGTTDQQGGVAEVKGTQLG 111
           RPGSG+   S     Q  S   +     S  +  V   S S G+  Q             
Sbjct: 752 RPGSGSSSGSSNSGSQPGSHPGSQSG--SGERFRVRSSSKSEGSPSQ------------- 796

Query: 112 DKLDSFIKPPECSSDVNLELRQRNRGDLTADSVQRGSRHGLEQYLSRFEEAMKLRKQLIS 171
            +L++ +K PE   +V   L+     DLTA          L + L   E+     K    
Sbjct: 797 -RLENAVKKPEDKKEVFRPLKPAGEVDLTA----------LAKELRAVEDVRPPHKVTDY 845

Query: 172 EKPSQEDGNTTEEFD 186
              S+E G T EE D
Sbjct: 846 SSSSEESGTTDEEDD 860


>gi|46094070 hypothetical protein LOC80097 [Homo sapiens]
          Length = 158

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 39/163 (23%), Positives = 61/163 (37%), Gaps = 30/163 (18%)

Query: 11  GERPGVPAGSGLSASQRRAELRRRKLLMNSEQRINRIMGFHRPGSGAEEESQTKSKQQDS 70
           G  PG  A  GL A++++  LRR+K+L   E  +  +       +G   +        D 
Sbjct: 7   GPGPGSAAPPGLEAARQKLALRRKKVLSTEEMELYEL----AQAAGGAIDPDVFKILVDL 62

Query: 71  DKLN--SLSVPSVSKRVVLGDSVSTGTTDQQGGVAEVKGTQLGDKLDSFIKPPECSSDVN 128
            KLN   L+V  + K +  G  +++   D                  + +  P  S    
Sbjct: 63  LKLNVAPLAVFQMLKSMCAGQRLASEPQD-----------------PAAVSLPTSSVP-- 103

Query: 129 LELRQRNRGDLTADS----VQRGSRHGLEQYLSRFEEAMKLRK 167
            E R RN+G           +R SR G  Q + R   A +L K
Sbjct: 104 -ETRGRNKGSAALGGALALAERSSREGSSQRMPRQPSATRLPK 145


>gi|54144654 rhomboid protease 2 [Homo sapiens]
          Length = 303

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 3/85 (3%)

Query: 150 HGLEQYLSRFEEAMKLRKQLISEKPSQEDGNTTEEFDSFRIFRLVGCALLALGVRAFVCK 209
           H LE          +++++L  E+  +EDG   +   S ++ R+V   +L    R    +
Sbjct: 5   HDLEMESMNLNMGREMKEELEEEEKMREDGGGKDRAKSKKVHRIVSKWMLPEKSRGTYLE 64

Query: 210 YLSIFAP---FLTLQLAYMGLYKYF 231
             + F P    +++ LA + ++ Y+
Sbjct: 65  RANCFPPPVFIISISLAELAVFIYY 89


>gi|111120331 PHD finger protein 20-like 1 isoform 1 [Homo sapiens]
          Length = 1017

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 7/62 (11%)

Query: 15  GVPAGSGLSASQRRAELRRRKLLM-------NSEQRINRIMGFHRPGSGAEEESQTKSKQ 67
           G PA +G+S ++++ +L  +           + E+R  R    +RP    +++ + KSKQ
Sbjct: 521 GAPAAAGISKTEKKVKLEDKSSTAFGKRKEKDKERREKRDKDHYRPKQKKKKKKKKKSKQ 580

Query: 68  QD 69
            D
Sbjct: 581 HD 582


>gi|145976946 hypothetical protein LOC653784 [Homo sapiens]
          Length = 158

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 11 GERPGVPAGSGLSASQRRAELRRRKLLMNSEQRI 44
          G  PG  A  GL A++++  LRR+K+L   E  +
Sbjct: 7  GPGPGSAAPPGLEAARQKLALRRKKVLSTEEMEL 40


>gi|93102364 SWAP-70 protein [Homo sapiens]
          Length = 585

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 37/168 (22%), Positives = 69/168 (41%), Gaps = 39/168 (23%)

Query: 24  ASQRRAELRRRKLLMNSEQRINRIMGFHRPGSGAEEESQTKSKQQDSDKLNSLSVPSVSK 83
           A QRR ELR+++L    ++ + R M         E ++  +SKQQ+ + +      + S+
Sbjct: 319 ARQRRKELRKKQLA--EQEELERQM--------KELQAANESKQQELEAVRKKLEEAASR 368

Query: 84  RVVLGDSVSTGTTDQQGGVAEVKGTQLGDKLDSFIKPPECSSDVNLELRQRNRGDLTADS 143
                              AE +  +L  +++      +      LE  +  R  +    
Sbjct: 369 ------------------AAEEEKKRLQTQVEL-----QARFSTELEREKLIRQQMEEQV 405

Query: 144 VQRGSRHGLEQYLSRFEEA----MKLRKQLISEKPSQEDGNTTEEFDS 187
            Q+ S   LEQYL R  E     +KL++ L  E+ +++D  T  +  +
Sbjct: 406 AQKSSE--LEQYLQRVRELEDMYLKLQEALEDERQARQDEETVRKLQA 451


>gi|51972208 leucine, glutamate and lysine rich 1 [Homo sapiens]
          Length = 388

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 29/152 (19%), Positives = 64/152 (42%), Gaps = 10/152 (6%)

Query: 40  SEQRINRIMGFHRPGSGAEEESQTK---SKQQDSDKLNSLSVPSVSKRVVLGDSVSTGTT 96
           +++R   ++ F       +EE++ +    K++  D +          ++ + D ++  T 
Sbjct: 103 AKERAQHLVEFEEQALLFKEETKLQLDIEKEKHQDVIQKYKKEQEELQMKISDLITGATR 162

Query: 97  DQQGGVAEVKG------TQLGDKLDSFIKPPECSSDVNLELRQRNRGDLTA-DSVQRGSR 149
           D +  V  +K       T+  ++ +S  K  E   ++  E   R + ++ + DSV    R
Sbjct: 163 DLRQEVTTLKEKLHKSHTRYTEESNSKEKEIENLKNLVAEFESRLKKEIDSNDSVSENLR 222

Query: 150 HGLEQYLSRFEEAMKLRKQLISEKPSQEDGNT 181
             +EQ     +  M  + QLI +    ++ NT
Sbjct: 223 KEMEQKSDELKRVMLAQTQLIEQFNQSQEENT 254


>gi|218931148 neuronal tropomodulin isoform b [Homo sapiens]
          Length = 315

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 7/77 (9%)

Query: 95  TTDQQGGVAEVKGTQLGDKLDSFIKPPECSSDVNLELRQRNRGDLTADSVQRGSRHGLEQ 154
           T + +GG   V+    G+K+    + P   ++V + L+Q    D +   V   +      
Sbjct: 153 TANNKGGKGPVRNVVKGEKVKPVFEEPPNPTNVEISLQQMKANDPSLQEVNLNN------ 206

Query: 155 YLSRFEEAMKLRKQLIS 171
            +  F + +K+ K L S
Sbjct: 207 -IKAFADMLKVNKTLTS 222


>gi|21361831 partitioning-defective protein 3 homolog [Homo sapiens]
          Length = 1356

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 4/80 (5%)

Query: 44  INRIMGFHRPGSGAEEESQTKSKQ-QDSDKLNSLSV-PSVSKRVVLGDSVSTGTTDQQ-- 99
           ++ ++ F R G G +  S+ ++KQ  D+ +L+ +    S S  + + D     T D Q  
Sbjct: 812 VDPVLAFQREGFGRQSMSEKRTKQFSDASQLDFVKTRKSKSMDLGIADETKLNTVDDQKA 871

Query: 100 GGVAEVKGTQLGDKLDSFIK 119
           G  +   G  LG K  S ++
Sbjct: 872 GSPSRDVGPSLGLKKSSSLE 891


>gi|214010216 SMC6 protein [Homo sapiens]
          Length = 1091

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 108 TQLGDKLDSFIKPPECSSDVNLELRQRNRGDLTADSVQRGSRHGLEQYLS 157
           T  G  L  F+K  + S+D+++ L  RNRGD    +   G+   ++Q++S
Sbjct: 100 TNRGSSLKGFVKDGQNSADISITL--RNRGDDAFKASVYGNSILIQQHIS 147


>gi|13375848 SMC6 protein [Homo sapiens]
          Length = 1091

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 108 TQLGDKLDSFIKPPECSSDVNLELRQRNRGDLTADSVQRGSRHGLEQYLS 157
           T  G  L  F+K  + S+D+++ L  RNRGD    +   G+   ++Q++S
Sbjct: 100 TNRGSSLKGFVKDGQNSADISITL--RNRGDDAFKASVYGNSILIQQHIS 147


>gi|27262622 neuron navigator 1 [Homo sapiens]
          Length = 1874

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 8/86 (9%)

Query: 58  EEESQTKSKQQDSDKLNSLSVPSVSKRVVLGDSVSTGTTDQQGGVAEVKGTQLGDKLDSF 117
           +E+++ K+   DSD ++  S+ S         S  T T      +AE+  T L     SF
Sbjct: 738 KEKAKAKAVALDSDNISLKSIGSPESTPKNQASHPTATK-----LAELPPTPLRATAKSF 792

Query: 118 IKPPECSSDVNLELRQRNRGDLTADS 143
           +KPP   S  NL+    N  DL + S
Sbjct: 793 VKPP---SLANLDKVNSNSLDLPSSS 815


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.134    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,637,996
Number of Sequences: 37866
Number of extensions: 443940
Number of successful extensions: 1704
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1695
Number of HSP's gapped (non-prelim): 31
length of query: 296
length of database: 18,247,518
effective HSP length: 102
effective length of query: 194
effective length of database: 14,385,186
effective search space: 2790726084
effective search space used: 2790726084
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.