Guide to the Human Genome
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Name: CAMLG Sequence: fasta or formatted (296aa) NCBI GI: 4502559
Description:

calcium modulating ligand

Referenced in:

Peptidylprolyl Isomerases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         17           2
 C cysteine            1.7          5           1
 D aspartate           5.1         15           1
 E glutamate           7.4         22           3
 F phenylalanine       5.1         15           2
 G glycine             8.1         24           2
 H histidine           1.0          3           1
 I isoleucine          3.4         10           1
 K lysine              6.1         18           2
 L leucine            10.8         32           3
 M methionine          2.7          8           1
 N asparagine          2.4          7           1
 P proline             3.7         11           2
 Q glutamine           4.7         14           2
 R arginine            7.1         21           3
 S serine             10.1         30           2
 T threonine           5.4         16           2
 V valine              6.4         19           2
 W tryptophan          0.3          1           1
 Y tyrosine            2.7          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calcium modulating ligand 
NOM1                  0.014   nucleolar protein with MIF4G domain 1 
TCHH                  0.013   trichohyalin 
DOK7                  0.011   downstream of tyrosine kinase 7 
KIAA0100              0.009   hypothetical protein LOC9703 
BCORL1                0.009   BCL6 co-repressor-like 1 
CECR6                 0.009   cat eye syndrome chromosome region, candidate 6 isof...
TAX1BP3               0.009   Tax1 binding protein 3 
RABEP1                0.009   rabaptin, RAB GTPase binding effector protein 1 iso...
RABEP1                0.009   rabaptin, RAB GTPase binding effector protein 1 isof...
MAP4K4                0.009   mitogen-activated protein kinase kinase kinase kinas...
MAP4K4                0.009   mitogen-activated protein kinase kinase kinase kinas...
MAP4K4                0.009   mitogen-activated protein kinase kinase kinase kinas...
FAM128B               0.009   hypothetical protein LOC80097 
RHBDL2                0.007   rhomboid protease 2 
PHF20L1               0.007   PHD finger protein 20-like 1 isoform 1 
FAM128A               0.007   hypothetical protein LOC653784 
SWAP70                0.005   SWAP-70 protein 
LEKR1                 0.005   leucine, glutamate and lysine rich 1 
TMOD2                 0.005   neuronal tropomodulin isoform b 
PARD3                 0.005   partitioning-defective protein 3 homolog 
SMC6                  0.005   SMC6 protein 
SMC6                  0.005   SMC6 protein 
NAV1                  0.005   neuron navigator 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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