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Search of human proteins with 4502539
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4502539 voltage-dependent calcium channel gamma-1 subunit
[Homo sapiens]
(222 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4502539 voltage-dependent calcium channel gamma-1 subunit [Ho... 459 e-130
gi|22027554 voltage-dependent calcium channel gamma-6 subunit is... 166 1e-41
gi|22027557 voltage-dependent calcium channel gamma-6 subunit is... 112 2e-25
gi|22027560 voltage-dependent calcium channel gamma-6 subunit is... 63 2e-10
gi|22027551 voltage-dependent calcium channel gamma-5 subunit is... 48 8e-06
gi|7656950 voltage-dependent calcium channel gamma-5 subunit iso... 47 1e-05
gi|5174405 voltage-dependent calcium channel gamma-2 subunit [Ho... 45 4e-05
gi|21361975 voltage-dependent calcium channel gamma-7 subunit [H... 42 3e-04
gi|7656948 voltage-dependent calcium channel gamma-4 subunit [Ho... 38 0.008
gi|5729756 voltage-dependent calcium channel gamma-3 subunit [Ho... 38 0.008
gi|239916002 lens intrinsic membrane protein 2, 19kDa isoform 2 ... 37 0.013
gi|21361300 lens intrinsic membrane protein 2, 19kDa isoform 1 [... 37 0.013
gi|31377722 PERP, TP53 apoptosis effector [Homo sapiens] 36 0.023
gi|24586686 voltage-dependent calcium channel gamma-8 subunit [H... 35 0.051
gi|22748835 transmembrane protein 178 [Homo sapiens] 32 0.33
gi|239756473 PREDICTED: transmembrane protein 114 [Homo sapiens] 31 0.74
gi|226437592 transmembrane protein 114 [Homo sapiens] 31 0.74
gi|239752599 PREDICTED: transmembrane protein 114, partial [Homo... 31 0.96
gi|93588657 claudin domain containing 1 protein isoform d [Homo ... 31 0.96
gi|93588650 claudin domain containing 1 protein isoform a [Homo ... 31 0.96
gi|93588620 claudin domain containing 1 protein isoform b [Homo ... 31 0.96
gi|93588614 claudin domain containing 1 protein isoform a [Homo ... 31 0.96
gi|93588624 claudin domain containing 1 protein isoform a [Homo ... 31 0.96
gi|11096340 claudin domain containing 1 protein isoform a [Homo ... 31 0.96
gi|6912500 phosphatidylinositol glycan anchor biosynthesis, clas... 30 1.3
gi|29029537 phosphatidylinositol glycan anchor biosynthesis, cla... 30 1.3
gi|169211272 PREDICTED: germ cell-specific gene 1-like protein 2... 29 2.8
gi|169211660 PREDICTED: germ cell-specific gene 1-like protein 2... 29 2.8
gi|169210878 PREDICTED: germ cell-specific gene 1-like protein 2... 29 2.8
gi|112382285 exostoses-like 1 [Homo sapiens] 29 3.7
>gi|4502539 voltage-dependent calcium channel gamma-1 subunit [Homo
sapiens]
Length = 222
Score = 459 bits (1181), Expect = e-130
Identities = 222/222 (100%), Positives = 222/222 (100%)
Query: 1 MSQTKMLKVRVTLFCILAGIVLAMTAVVTDHWAVLSPHMEHHNTTCEAAHFGLWRICTKR 60
MSQTKMLKVRVTLFCILAGIVLAMTAVVTDHWAVLSPHMEHHNTTCEAAHFGLWRICTKR
Sbjct: 1 MSQTKMLKVRVTLFCILAGIVLAMTAVVTDHWAVLSPHMEHHNTTCEAAHFGLWRICTKR 60
Query: 61 IPMDDSKTCGPITLPGEKNCSYFRHFNPGESSEIFEFTTQKEYSISAAAIAIFSLGFIIL 120
IPMDDSKTCGPITLPGEKNCSYFRHFNPGESSEIFEFTTQKEYSISAAAIAIFSLGFIIL
Sbjct: 61 IPMDDSKTCGPITLPGEKNCSYFRHFNPGESSEIFEFTTQKEYSISAAAIAIFSLGFIIL 120
Query: 121 GSLCVLLSLGKKRDYLLRPASMFYAFAGLCILVSVEVMRQSVKRMIDSEDTVWIEYYYSW 180
GSLCVLLSLGKKRDYLLRPASMFYAFAGLCILVSVEVMRQSVKRMIDSEDTVWIEYYYSW
Sbjct: 121 GSLCVLLSLGKKRDYLLRPASMFYAFAGLCILVSVEVMRQSVKRMIDSEDTVWIEYYYSW 180
Query: 181 SFACACAAFILLFLGGLALLLFSLPRMPRNPWESCMDAEPEH 222
SFACACAAFILLFLGGLALLLFSLPRMPRNPWESCMDAEPEH
Sbjct: 181 SFACACAAFILLFLGGLALLLFSLPRMPRNPWESCMDAEPEH 222
>gi|22027554 voltage-dependent calcium channel gamma-6 subunit
isoform a [Homo sapiens]
Length = 260
Score = 166 bits (421), Expect = 1e-41
Identities = 84/211 (39%), Positives = 126/211 (59%), Gaps = 11/211 (5%)
Query: 8 KVRVTLFCILAGIVLAMTAVVTDHWAVLSPHMEHHNTTCEAAHFGLWRICTKR-----IP 62
KV++ L G LA+ +V T+ W L+ + + + CEAAH GLW+ CTKR +P
Sbjct: 38 KVKLALLLAAVGATLAVLSVGTEFWVELNTYKANGSAVCEAAHLGLWKACTKRLWQADVP 97
Query: 63 MDDSKTCGPITLPGEKNCSYFRHFNPGESSEIFEFTTQKEYSISAAAIAIFSLGFIILGS 122
+D TCGP LPGE NC+YF+ F GE++ IF+ TT+KE +++AA IA+ L + LG
Sbjct: 98 VDRD-TCGPAELPGEANCTYFKFFTTGENARIFQRTTKKEVNLAAAVIAVLGLAVMALGC 156
Query: 123 LCVLLSLGKKRDYLLRPASMFYAFAGLCILVSVEVMRQSVKRMI-----DSEDTVWIEYY 177
LC+++ L K ++LLR ++ + +GL +LVS+EV R SV+ ++ + + Y
Sbjct: 157 LCIIMVLSKGAEFLLRVGAVCFGLSGLLLLVSLEVFRHSVRALLQRVSPEPPPAPRLTYE 216
Query: 178 YSWSFACACAAFILLFLGGLALLLFSLPRMP 208
YSWS C A ++L LG LL +LP P
Sbjct: 217 YSWSLGCGVGAGLILLLGAGCFLLLTLPSWP 247
>gi|22027557 voltage-dependent calcium channel gamma-6 subunit
isoform b [Homo sapiens]
Length = 214
Score = 112 bits (281), Expect = 2e-25
Identities = 69/211 (32%), Positives = 97/211 (45%), Gaps = 57/211 (27%)
Query: 8 KVRVTLFCILAGIVLAMTAVVTDHWAVLSPHMEHHNTTCEAAHFGLWRICTKR-----IP 62
KV++ L G LA+ +V T+ W L+ + + + CEAAH GLW+ CTKR +P
Sbjct: 38 KVKLALLLAAVGATLAVLSVGTEFWVELNTYKANGSAVCEAAHLGLWKACTKRLWQADVP 97
Query: 63 MDDSKTCGPITLPGEKNCSYFRHFNPGESSEIFEFTTQKEYSISAAAIAIFSLGFIILGS 122
+ D TCGP LPGE NC+YF+ F GE++ IF+ TT+K
Sbjct: 98 V-DRDTCGPAELPGEANCTYFKFFTTGENARIFQRTTKK--------------------- 135
Query: 123 LCVLLSLGKKRDYLLRPASMFYAFAGLCILVSVEVMRQSVKRMI-----DSEDTVWIEYY 177
GL +LVS+EV R SV+ ++ + + Y
Sbjct: 136 -------------------------GLLLLVSLEVFRHSVRALLQRVSPEPPPAPRLTYE 170
Query: 178 YSWSFACACAAFILLFLGGLALLLFSLPRMP 208
YSWS C A ++L LG LL +LP P
Sbjct: 171 YSWSLGCGVGAGLILLLGAGCFLLLTLPSWP 201
>gi|22027560 voltage-dependent calcium channel gamma-6 subunit
isoform c [Homo sapiens]
Length = 189
Score = 63.2 bits (152), Expect = 2e-10
Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 8 KVRVTLFCILAGIVLAMTAVVTDHWAVLSPHMEHHNTTCEAAHFGLWRICTKR-----IP 62
KV++ L G LA+ +V T+ W L+ + + + CEAAH GLW+ CTKR +P
Sbjct: 38 KVKLALLLAAVGATLAVLSVGTEFWVELNTYKANGSAVCEAAHLGLWKACTKRLWQADVP 97
Query: 63 MDDSKTCGPITLPG 76
+ D TCGP LPG
Sbjct: 98 V-DRDTCGPAELPG 110
Score = 46.6 bits (109), Expect = 2e-05
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 148 GLCILVSVEVMRQSVKRMI-----DSEDTVWIEYYYSWSFACACAAFILLFLGGLALLLF 202
GL +LVS+EV R SV+ ++ + + Y YSWS C A ++L LG LL
Sbjct: 111 GLLLLVSLEVFRHSVRALLQRVSPEPPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFLLL 170
Query: 203 SLPRMP 208
+LP P
Sbjct: 171 TLPSWP 176
>gi|22027551 voltage-dependent calcium channel gamma-5 subunit
isoform a [Homo sapiens]
Length = 275
Score = 47.8 bits (112), Expect = 8e-06
Identities = 55/217 (25%), Positives = 94/217 (43%), Gaps = 35/217 (16%)
Query: 5 KMLKVRVTLFCILAGIVLAMTAVVTDHWAVLSPHM---EHHNTTCEAA-HFGLWRICTKR 60
K L + ++F + G+ L AV TD+W L + ++ +T + + H GLWR+C
Sbjct: 7 KALTLLSSVFAV-CGLGLLGIAVSTDYWLYLEEGVIVPQNQSTEIKMSLHSGLWRVCF-- 63
Query: 61 IPMDDSKTCGPITLPGEKN--CSYFRHFNPGESSEIFEFTTQKEYSI-SAAAIAIFSLGF 117
L GE+ C + P + E T I SA + SL F
Sbjct: 64 -------------LAGEERGRCFTIEYVMPMNTQLTSESTVNVLKMIRSATPFPLVSLFF 110
Query: 118 IILGSLCVLLSLGKKRDY---LLRPASMFYAFAGLCILVSVEVMRQSVK-----RMIDSE 169
+ +G +L ++G R + L + +F+ +GL ++V + + S+ R D+E
Sbjct: 111 MFIGF--ILNNIGHIRPHRTILAFVSGIFFILSGLSLVVGLVLYISSINDEMLNRTKDAE 168
Query: 170 DTVWIEYYYSWSFACACAAFILLFLGGLALLLFSLPR 206
+ Y Y WSFA A +F+L G+ + + R
Sbjct: 169 --TYFNYKYGWSFAFAAISFLLTESAGVMSVYLFMKR 203
>gi|7656950 voltage-dependent calcium channel gamma-5 subunit
isoform b [Homo sapiens]
Length = 296
Score = 47.0 bits (110), Expect = 1e-05
Identities = 53/202 (26%), Positives = 89/202 (44%), Gaps = 35/202 (17%)
Query: 5 KMLKVRVTLFCILAGIVLAMTAVVTDHWAVLSPHM---EHHNTTCEAA-HFGLWRICTKR 60
K L + ++F + G+ L AV TD+W L + ++ +T + + H GLWR+C
Sbjct: 7 KALTLLSSVFAV-CGLGLLGIAVSTDYWLYLEEGVIVPQNQSTEIKMSLHSGLWRVCF-- 63
Query: 61 IPMDDSKTCGPITLPGEKN--CSYFRHFNPGESSEIFEFTTQKEYSI-SAAAIAIFSLGF 117
L GE+ C + P + E T I SA + SL F
Sbjct: 64 -------------LAGEERGRCFTIEYVMPMNTQLTSESTVNVLKMIRSATPFPLVSLFF 110
Query: 118 IILGSLCVLLSLGKKRDY---LLRPASMFYAFAGLCILVSVEVMRQSVK-----RMIDSE 169
+ +G +L ++G R + L + +F+ +GL ++V + + S+ R D+E
Sbjct: 111 MFIGF--ILNNIGHIRPHRTILAFVSGIFFILSGLSLVVGLVLYISSINDEMLNRTKDAE 168
Query: 170 DTVWIEYYYSWSFACACAAFIL 191
+ Y Y WSFA A +F+L
Sbjct: 169 --TYFNYKYGWSFAFAAISFLL 188
>gi|5174405 voltage-dependent calcium channel gamma-2 subunit [Homo
sapiens]
Length = 323
Score = 45.4 bits (106), Expect = 4e-05
Identities = 54/210 (25%), Positives = 84/210 (40%), Gaps = 30/210 (14%)
Query: 7 LKVRVTLFCILAGIVLAMTAVVTDHW----AVLSPHMEHHNTTCEA-----AHFGLWRIC 57
+++ +T A L AV TD+W V N T + H GLWR C
Sbjct: 8 VQMLLTTVGAFAAFSLMTIAVGTDYWLYSRGVCKTKSVSENETSKKNEEVMTHSGLWRTC 67
Query: 58 TKRIPMDDSKTCGPITLPGEKNCSYFRHFNPGESSEIFEFTTQKEYSISAAAIAIFSLGF 117
C G C HF P ++ +E T + + + A +IF +
Sbjct: 68 -----------CLEGNFKGL--CKQIDHF-PEDAD--YEADTAEYFLRAVRASSIFPILS 111
Query: 118 IIL---GSLCVLLS-LGKKRDYLLRPASMFYAFAGLCILVSVEVMRQSVKRMIDSEDTVW 173
+IL G LC+ S K R ++ A +F+ AGL ++ + V + D+
Sbjct: 112 VILLFMGGLCIAASEFYKTRHNIILSAGIFFVSAGLSNIIGIIVYISANAGDPSKSDSKK 171
Query: 174 IEYYYSWSFACACAAFILL-FLGGLALLLF 202
Y Y WSF +FI+ +G LA+ +F
Sbjct: 172 NSYSYGWSFYFGALSFIIAEMVGVLAVHMF 201
>gi|21361975 voltage-dependent calcium channel gamma-7 subunit [Homo
sapiens]
Length = 275
Score = 42.4 bits (98), Expect = 3e-04
Identities = 44/184 (23%), Positives = 76/184 (41%), Gaps = 26/184 (14%)
Query: 19 GIVLAMTAVVTDHWAVLSPH-MEHHNTTCE---AAHFGLWRICTKRIPMDDSKTCGPITL 74
G++L AV TD+W + + N T E A H GLWR+C
Sbjct: 20 GLLLVGIAVSTDYWLYMEEGTVLPQNQTTEVKMALHAGLWRVC--------------FFA 65
Query: 75 PGEKN-CSYFRHFNPGESSEIFEFTTQKEYSISAAAIAIFSLGFIILGSLCVLLSLGK-- 131
EK C +F E + + E T+ A + ++ + V+ ++G
Sbjct: 66 GREKGRCVASEYFLEPEINLVTE-NTENILKTVRTATPFPMVSLFLVFTAFVISNIGHIR 124
Query: 132 -KRDYLLRPASMFYAFAGLCILVSVEVMRQSVKRMI---DSEDTVWIEYYYSWSFACACA 187
+R L + +F+ +GL ++V + + S+ + S + Y Y WSFA A +
Sbjct: 125 PQRTILAFVSGIFFILSGLSLVVGLVLYISSINDEVMNRPSSSEQYFHYRYGWSFAFAAS 184
Query: 188 AFIL 191
+F+L
Sbjct: 185 SFLL 188
>gi|7656948 voltage-dependent calcium channel gamma-4 subunit [Homo
sapiens]
Length = 327
Score = 37.7 bits (86), Expect = 0.008
Identities = 48/205 (23%), Positives = 79/205 (38%), Gaps = 38/205 (18%)
Query: 7 LKVRVTLFCILAGIVLAMTAVVTDHWAVLSPHM-EHHNTTCE-----------AAHFGLW 54
L++ +T A L A+ TD+W S H+ N T + H GLW
Sbjct: 8 LQMLLTTAGAFAAFSLMAIAIGTDYWLYSSAHICNGTNLTMDDGPPPRRARGDLTHSGLW 67
Query: 55 RICTKRIPMDDSKTCGPITLPGEKNCSYFRHFNPGESSEIFEFTTQKEYSISAAAI-AIF 113
R+C C G +C HF P ++ + + + A+++ I
Sbjct: 68 RVC-----------CIEGIYKG--HCFRINHF-PEDNDYDHDSSEYLLRIVRASSVFPIL 113
Query: 114 SLGFIILGSLCVLLS--LGKKRDYLLRPASMFYA-----FAGLCILVSVEVMRQSVKRMI 166
S ++LG LC+ +K + +L +F A G+ + +S S KR
Sbjct: 114 STILLLLGGLCIGAGRIYSRKNNIVLSAGILFVAAGLSNIIGIIVYISSNTGDPSDKRDE 173
Query: 167 DSEDTVWIEYYYSWSFACACAAFIL 191
D ++ Y Y WSF +FI+
Sbjct: 174 DKKN----HYNYGWSFYFGALSFIV 194
>gi|5729756 voltage-dependent calcium channel gamma-3 subunit [Homo
sapiens]
Length = 315
Score = 37.7 bits (86), Expect = 0.008
Identities = 50/205 (24%), Positives = 76/205 (37%), Gaps = 32/205 (15%)
Query: 7 LKVRVTLFCILAGIVLAMTAVVTDHW----AVLSPHMEHHNTTCEA-----AHFGLWRIC 57
+++ +T A L AV TD+W V N T H GLWR C
Sbjct: 8 IQMLITTVGAFAAFSLMTIAVGTDYWLYSRGVCRTKSTSDNETSRKNEEVMTHSGLWRTC 67
Query: 58 TKRIPMDDSKTCGPITLPGEKNCSYFRHFNPGESSEIFEFTTQKEYSISA----AAIAIF 113
C G C HF E ++ + T EY + A + I
Sbjct: 68 -----------CLEGAFRGV--CKKIDHFP--EDADYEQDTA--EYLLRAVRASSVFPIL 110
Query: 114 SLGFIILGSLCVLLS-LGKKRDYLLRPASMFYAFAGLCILVSVEVMRQSVKRMIDSEDTV 172
S+ + G LCV S + R ++ A +F+ AGL ++ + V + D+
Sbjct: 111 SVTLLFFGGLCVAASEFHRSRHNVILSAGIFFVSAGLSNIIGIIVYISANAGDPGQRDSK 170
Query: 173 WIEYYYSWSFACACAAFILLFLGGL 197
Y Y WSF +FI+ + G+
Sbjct: 171 K-SYSYGWSFYFGAFSFIIAEIVGV 194
>gi|239916002 lens intrinsic membrane protein 2, 19kDa isoform 2
[Homo sapiens]
Length = 173
Score = 37.0 bits (84), Expect = 0.013
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
Query: 13 LFCILAGIVLAMTAVVTDHWAVLSPHMEHHNTTCEAAHFGLWRIC 57
LFC G +L + A+ TDHW + + AH GLWR C
Sbjct: 9 LFCAWVGTILLVVAMATDHWM-------QYRLSGSFAHQGLWRYC 46
>gi|21361300 lens intrinsic membrane protein 2, 19kDa isoform 1
[Homo sapiens]
Length = 215
Score = 37.0 bits (84), Expect = 0.013
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
Query: 13 LFCILAGIVLAMTAVVTDHWAVLSPHMEHHNTTCEAAHFGLWRIC 57
LFC G +L + A+ TDHW + + AH GLWR C
Sbjct: 9 LFCAWVGTILLVVAMATDHWM-------QYRLSGSFAHQGLWRYC 46
>gi|31377722 PERP, TP53 apoptosis effector [Homo sapiens]
Length = 193
Score = 36.2 bits (82), Expect = 0.023
Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 9/136 (6%)
Query: 76 GEKNCSYFRHFNPGESSEIFEFTTQK--EYSISAAAIAIFSLGFIILGSLCVLLSL---- 129
G+ + +++ G S +E Q EY+ AA A+ GFIIL +C +LS
Sbjct: 42 GQTSSLWWKCSQEGGGSGSYEEGCQSLMEYAWGRAAAAMLFCGFIIL-VICFILSFFALC 100
Query: 130 GKKRDYLLRPASMFYAFAGLCILVSVEVMRQSVKRMIDSEDTVWIEYYYSWSFACACAAF 189
G + LR A A + ++S+ + + + Y Y+W++ AA
Sbjct: 101 GPQMLVFLRVIGGLLALAAVFQIISLVIYPVKYTQTFTLHANPAVTYIYNWAYGFGWAAT 160
Query: 190 ILLFLGGLALLLFSLP 205
I+L G A LP
Sbjct: 161 IILI--GCAFFFCCLP 174
>gi|24586686 voltage-dependent calcium channel gamma-8 subunit [Homo
sapiens]
Length = 425
Score = 35.0 bits (79), Expect = 0.051
Identities = 43/164 (26%), Positives = 66/164 (40%), Gaps = 31/164 (18%)
Query: 50 HFGLWRICTKRIPMDDSKTCGPITLPGEKN--CSYFRHFNPGESSEIFEFTTQKEYSISA 107
H GLWRIC L G K C HF P ++ + + A
Sbjct: 84 HSGLWRIC---------------CLEGLKRGVCVKINHF-PEDTDYDHDSAEYLLRVVRA 127
Query: 108 AAI-AIFSLGFIILGSLCVLLS--LGKKRDYLLRPASMFYA-----FAGLCILVSVEVMR 159
++I I S ++LG +CV S KR+ +L +F A G+ + +S
Sbjct: 128 SSIFPILSAILLLLGGVCVAASRVYKSKRNIILGAGILFVAAGLSNIIGVIVYISANAGE 187
Query: 160 QSVKRMIDSEDTVWIEYYYSWSFACACAAFILL-FLGGLALLLF 202
KR + ++ Y Y WSF +FIL +G LA+ ++
Sbjct: 188 PGPKRDEEKKN----HYSYGWSFYFGGLSFILAEVIGVLAVNIY 227
>gi|22748835 transmembrane protein 178 [Homo sapiens]
Length = 297
Score = 32.3 bits (72), Expect = 0.33
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 9/81 (11%)
Query: 3 QTKMLKVRVTLFCILAGIVLAMTAVVTDHWAVLSPHMEHHNTTCEAAHFGL-------WR 55
+ + L ++L L + L +TA+ TDHW P H +CE + G
Sbjct: 2 EPRALVTALSLGLSLCSLGLLVTAIFTDHWYETDP--RRHKESCERSRAGADPPDQKNRL 59
Query: 56 ICTKRIPMDDSKTCGPITLPG 76
+ +P+ DS G LPG
Sbjct: 60 MPLSHLPLRDSPPLGRRLLPG 80
>gi|239756473 PREDICTED: transmembrane protein 114 [Homo sapiens]
Length = 223
Score = 31.2 bits (69), Expect = 0.74
Identities = 42/203 (20%), Positives = 72/203 (35%), Gaps = 39/203 (19%)
Query: 21 VLAMTAVVTDHWAVL-SPHMEHHNTTCE--------------AAHFGLWRICTKRIPMDD 65
VL A+ TD W ++ + +E + ++H GLWR C + P
Sbjct: 21 VLLAAAIGTDFWYIIDTERLERTGPGAQDLLGSINRSQPEPLSSHSGLWRTCRVQSP--- 77
Query: 66 SKTCGPITLPGEKNCSYFRHFNPGESSEIFEFTTQKEYSISAAAIAIFSLGFIILGSLCV 125
C P+ P FR N S + T + + SL ++ G +
Sbjct: 78 ---CTPLMNP-------FRLENVTVSESSRQLLTMHG---TFVILLPLSLILMVFGGMTG 124
Query: 126 LLSLGKKRDYLLRPASMFYAFAGLCILVSVEV--------MRQSVKRMIDSEDTVWIEYY 177
LS + LL + + F + L + V R+++ + + ++
Sbjct: 125 FLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCLLEEKALLDQVDIS 184
Query: 178 YSWSFACACAAFILLFLGGLALL 200
+ WS A +FI L G A L
Sbjct: 185 FGWSLALGWISFIAELLTGAAFL 207
>gi|226437592 transmembrane protein 114 [Homo sapiens]
Length = 223
Score = 31.2 bits (69), Expect = 0.74
Identities = 42/203 (20%), Positives = 72/203 (35%), Gaps = 39/203 (19%)
Query: 21 VLAMTAVVTDHWAVL-SPHMEHHNTTCE--------------AAHFGLWRICTKRIPMDD 65
VL A+ TD W ++ + +E + ++H GLWR C + P
Sbjct: 21 VLLAAAIGTDFWYIIDTERLERTGPGAQDLLGSINRSQPEPLSSHSGLWRTCRVQSP--- 77
Query: 66 SKTCGPITLPGEKNCSYFRHFNPGESSEIFEFTTQKEYSISAAAIAIFSLGFIILGSLCV 125
C P+ P FR N S + T + + SL ++ G +
Sbjct: 78 ---CTPLMNP-------FRLENVTVSESSRQLLTMHG---TFVILLPLSLILMVFGGMTG 124
Query: 126 LLSLGKKRDYLLRPASMFYAFAGLCILVSVEV--------MRQSVKRMIDSEDTVWIEYY 177
LS + LL + + F + L + V R+++ + + ++
Sbjct: 125 FLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCLLEEKALLDQVDIS 184
Query: 178 YSWSFACACAAFILLFLGGLALL 200
+ WS A +FI L G A L
Sbjct: 185 FGWSLALGWISFIAELLTGAAFL 207
>gi|239752599 PREDICTED: transmembrane protein 114, partial [Homo
sapiens]
Length = 217
Score = 30.8 bits (68), Expect = 0.96
Identities = 35/161 (21%), Positives = 59/161 (36%), Gaps = 24/161 (14%)
Query: 48 AAHFGLWRICTKRIPMDDSKTCGPITLPGEKNCSYFRHFNPGESSEIFEFTTQKEYSISA 107
++H GLWR C + P C P+ P FR N S + T +
Sbjct: 57 SSHSGLWRTCRVQSP------CTPLMNP-------FRLENVTVSESSRQLLTMHG---TF 100
Query: 108 AAIAIFSLGFIILGSLCVLLSLGKKRDYLLRPASMFYAFAGLCILVSVEV--------MR 159
+ SL ++ G + LS + LL + + F + L + V R
Sbjct: 101 VILLPLSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFR 160
Query: 160 QSVKRMIDSEDTVWIEYYYSWSFACACAAFILLFLGGLALL 200
+++ + + ++ + WS A +FI L G A L
Sbjct: 161 EALCLLEEKALLDQVDISFGWSLALGWISFIAELLTGAAFL 201
>gi|93588657 claudin domain containing 1 protein isoform d [Homo
sapiens]
Length = 158
Score = 30.8 bits (68), Expect = 0.96
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 114 SLGFIILGSLCVLLSLGKKRDYLLRPASMFYAFAGLCILVSVEVMRQSVK---RMIDSED 170
SLG + G+L L + + Y + + AGLC L SV ++ + ++ D
Sbjct: 52 SLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLELPD 111
Query: 171 TVWIEYYYSWSFACACAAFILLFL 194
V E + WSF AC + L F+
Sbjct: 112 NVSGE--FGWSFCLACVSAPLQFM 133
>gi|93588650 claudin domain containing 1 protein isoform a [Homo
sapiens]
Length = 253
Score = 30.8 bits (68), Expect = 0.96
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 114 SLGFIILGSLCVLLSLGKKRDYLLRPASMFYAFAGLCILVSVEVMRQSVK---RMIDSED 170
SLG + G+L L + + Y + + AGLC L SV ++ + ++ D
Sbjct: 147 SLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLELPD 206
Query: 171 TVWIEYYYSWSFACACAAFILLFL 194
V E + WSF AC + L F+
Sbjct: 207 NVSGE--FGWSFCLACVSAPLQFM 228
>gi|93588620 claudin domain containing 1 protein isoform b [Homo
sapiens]
Length = 276
Score = 30.8 bits (68), Expect = 0.96
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 114 SLGFIILGSLCVLLSLGKKRDYLLRPASMFYAFAGLCILVSVEVMRQSVK---RMIDSED 170
SLG + G+L L + + Y + + AGLC L SV ++ + ++ D
Sbjct: 170 SLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLELPD 229
Query: 171 TVWIEYYYSWSFACACAAFILLFL 194
V E + WSF AC + L F+
Sbjct: 230 NVSGE--FGWSFCLACVSAPLQFM 251
>gi|93588614 claudin domain containing 1 protein isoform a [Homo
sapiens]
Length = 253
Score = 30.8 bits (68), Expect = 0.96
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 114 SLGFIILGSLCVLLSLGKKRDYLLRPASMFYAFAGLCILVSVEVMRQSVK---RMIDSED 170
SLG + G+L L + + Y + + AGLC L SV ++ + ++ D
Sbjct: 147 SLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLELPD 206
Query: 171 TVWIEYYYSWSFACACAAFILLFL 194
V E + WSF AC + L F+
Sbjct: 207 NVSGE--FGWSFCLACVSAPLQFM 228
>gi|93588624 claudin domain containing 1 protein isoform a [Homo
sapiens]
Length = 253
Score = 30.8 bits (68), Expect = 0.96
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 114 SLGFIILGSLCVLLSLGKKRDYLLRPASMFYAFAGLCILVSVEVMRQSVK---RMIDSED 170
SLG + G+L L + + Y + + AGLC L SV ++ + ++ D
Sbjct: 147 SLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLELPD 206
Query: 171 TVWIEYYYSWSFACACAAFILLFL 194
V E + WSF AC + L F+
Sbjct: 207 NVSGE--FGWSFCLACVSAPLQFM 228
>gi|11096340 claudin domain containing 1 protein isoform a [Homo
sapiens]
Length = 253
Score = 30.8 bits (68), Expect = 0.96
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 114 SLGFIILGSLCVLLSLGKKRDYLLRPASMFYAFAGLCILVSVEVMRQSVK---RMIDSED 170
SLG + G+L L + + Y + + AGLC L SV ++ + ++ D
Sbjct: 147 SLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLELPD 206
Query: 171 TVWIEYYYSWSFACACAAFILLFL 194
V E + WSF AC + L F+
Sbjct: 207 NVSGE--FGWSFCLACVSAPLQFM 228
>gi|6912500 phosphatidylinositol glycan anchor biosynthesis, class N
[Homo sapiens]
Length = 931
Score = 30.4 bits (67), Expect = 1.3
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 118 IILGSLCVLLSLGKKRDYLLRPASMFYAFAGLCILVSVEVMRQSVKRMIDSEDTVWIEYY 177
++L SLCV+ SL K++D ++ + + L ++S+ V+ + ++ + +
Sbjct: 627 VLLLSLCVVTSLMKRKDSFIKEELLVHLLQVLSTVLSMYVVYSTQSSLLRKQGLPLMNQI 686
Query: 178 YSWSFACACAAFILLFLGGLALLLFSL 204
SW+ + LL L LFS+
Sbjct: 687 ISWATLASSLVVPLLSSPVLFQRLFSI 713
>gi|29029537 phosphatidylinositol glycan anchor biosynthesis, class
N [Homo sapiens]
Length = 931
Score = 30.4 bits (67), Expect = 1.3
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 118 IILGSLCVLLSLGKKRDYLLRPASMFYAFAGLCILVSVEVMRQSVKRMIDSEDTVWIEYY 177
++L SLCV+ SL K++D ++ + + L ++S+ V+ + ++ + +
Sbjct: 627 VLLLSLCVVTSLMKRKDSFIKEELLVHLLQVLSTVLSMYVVYSTQSSLLRKQGLPLMNQI 686
Query: 178 YSWSFACACAAFILLFLGGLALLLFSL 204
SW+ + LL L LFS+
Sbjct: 687 ISWATLASSLVVPLLSSPVLFQRLFSI 713
>gi|169211272 PREDICTED: germ cell-specific gene 1-like protein
2-like [Homo sapiens]
Length = 293
Score = 29.3 bits (64), Expect = 2.8
Identities = 34/145 (23%), Positives = 56/145 (38%), Gaps = 20/145 (13%)
Query: 50 HFGLWRICTKRIPMDDSKTCGPITLPGEKNCSYFRHFNPGESSEIFEFTTQKEYSISAAA 109
H GLW+ C + + +D K C FR P E + + E
Sbjct: 89 HVGLWQSCEESLNGEDEK------------CRSFRSVVPAEEQGVLWLSIGGE----VLD 132
Query: 110 IAIFSLGFIILGSLCVLLSLGKKRDYLLRPASMFYAFAGLCILVSVEVMRQSVKRM---I 166
I + I+LGS S G + ++F AGL +V+ +M ++ ++ +
Sbjct: 133 IVLILTSAILLGSRVSCRSPGFHWLRVDALVAIFMVLAGLLGMVA-HMMYTTIFQITVNL 191
Query: 167 DSEDTVWIEYYYSWSFACACAAFIL 191
ED + Y WS+ A +F L
Sbjct: 192 GPEDWKPQTWDYGWSYCLAWGSFAL 216
>gi|169211660 PREDICTED: germ cell-specific gene 1-like protein
2-like [Homo sapiens]
Length = 293
Score = 29.3 bits (64), Expect = 2.8
Identities = 34/145 (23%), Positives = 56/145 (38%), Gaps = 20/145 (13%)
Query: 50 HFGLWRICTKRIPMDDSKTCGPITLPGEKNCSYFRHFNPGESSEIFEFTTQKEYSISAAA 109
H GLW+ C + + +D K C FR P E + + E
Sbjct: 89 HVGLWQSCEESLNGEDEK------------CRSFRSVVPAEEQGVLWLSIGGE----VLD 132
Query: 110 IAIFSLGFIILGSLCVLLSLGKKRDYLLRPASMFYAFAGLCILVSVEVMRQSVKRM---I 166
I + I+LGS S G + ++F AGL +V+ +M ++ ++ +
Sbjct: 133 IVLILTSAILLGSRVSCRSPGFHWLRVDALVAIFMVLAGLLGMVA-HMMYTTIFQITVNL 191
Query: 167 DSEDTVWIEYYYSWSFACACAAFIL 191
ED + Y WS+ A +F L
Sbjct: 192 GPEDWKPQTWDYGWSYCLAWGSFAL 216
>gi|169210878 PREDICTED: germ cell-specific gene 1-like protein
2-like [Homo sapiens]
Length = 293
Score = 29.3 bits (64), Expect = 2.8
Identities = 34/145 (23%), Positives = 56/145 (38%), Gaps = 20/145 (13%)
Query: 50 HFGLWRICTKRIPMDDSKTCGPITLPGEKNCSYFRHFNPGESSEIFEFTTQKEYSISAAA 109
H GLW+ C + + +D K C FR P E + + E
Sbjct: 89 HVGLWQSCEESLNGEDEK------------CRSFRSVVPAEEQGVLWLSIGGE----VLD 132
Query: 110 IAIFSLGFIILGSLCVLLSLGKKRDYLLRPASMFYAFAGLCILVSVEVMRQSVKRM---I 166
I + I+LGS S G + ++F AGL +V+ +M ++ ++ +
Sbjct: 133 IVLILTSAILLGSRVSCRSPGFHWLRVDALVAIFMVLAGLLGMVA-HMMYTTIFQITVNL 191
Query: 167 DSEDTVWIEYYYSWSFACACAAFIL 191
ED + Y WS+ A +F L
Sbjct: 192 GPEDWKPQTWDYGWSYCLAWGSFAL 216
>gi|112382285 exostoses-like 1 [Homo sapiens]
Length = 676
Score = 28.9 bits (63), Expect = 3.7
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 12/53 (22%)
Query: 171 TVWIEYYYSWSFACACAAFILLFLGGLALLLFSLPRMPR----NPWESCMDAE 219
++W+ SW +L+ LGG +LL +LP PR W +DAE
Sbjct: 9 SLWLALSASW--------LLLVLLGGFSLLRLALPPRPRPGASQGWPRWLDAE 53
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.328 0.138 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,401,005
Number of Sequences: 37866
Number of extensions: 345228
Number of successful extensions: 905
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 864
Number of HSP's gapped (non-prelim): 42
length of query: 222
length of database: 18,247,518
effective HSP length: 98
effective length of query: 124
effective length of database: 14,536,650
effective search space: 1802544600
effective search space used: 1802544600
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.