Guide to the Human Genome
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Name: EXTL1 Sequence: fasta or formatted (676aa) NCBI GI: 112382285
Description:

exostoses-like 1

Referenced in:

Protein Glycosylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         64           3
 C cysteine            1.9         13           1
 D aspartate           3.8         26           1
 E glutamate           4.7         32           3
 F phenylalanine       4.7         32           1
 G glycine             6.7         45           2
 H histidine           2.5         17           1
 I isoleucine          3.0         20           1
 K lysine              2.4         16           2
 L leucine            12.3         83           5
 M methionine          1.2          8           1
 N asparagine          1.3          9           1
 P proline            10.1         68           2
 Q glutamine           5.3         36           2
 R arginine            7.0         47           3
 S serine              8.6         58           2
 T threonine           5.0         34           2
 V valine              5.3         36           1
 W tryptophan          2.8         19           1
 Y tyrosine            1.9         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   exostoses-like 1 
EXT1                  0.384   exostosin 1 
EXT2                  0.183   exostosin 2 isoform 2 
EXT2                  0.183   exostosin 2 isoform 1 
EXTL3                 0.095   exostoses-like 3 
EXTL2                 0.041   exostoses-like 2 
EXTL2                 0.041   exostoses-like 2 
KCNQ1                 0.010   potassium voltage-gated channel, KQT-like subfamily,...
CITED4                0.009   Cbp/p300-interacting transactivator, with Glu/Asp-ri...
NAT6                  0.007   N-acetyltransferase 6 
ARMC5                 0.007   armadillo repeat containing 5 isoform a 
CPEB3                 0.007   cytoplasmic polyadenylation element binding protein ...
SRPK2                 0.007   serine/arginine-rich protein-specific kinase 2 isofo...
SYNJ2                 0.007   synaptojanin 2 
CDKN1C                0.006   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.006   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.006   cyclin-dependent kinase inhibitor 1C isoform a 
HOXA3                 0.006   homeobox A3 isoform a 
HOXA3                 0.006   homeobox A3 isoform a 
LOC100288901          0.006   PREDICTED: hypothetical protein XP_002342617 
ZNF787                0.006   zinc finger protein 787 
RCOR3                 0.006   REST corepressor 3 isoform a 
RCOR3                 0.006   REST corepressor 3 isoform d 
SRPK2                 0.005   serine/arginine-rich protein-specific kinase 2 isofo...
ANKRD33               0.005   ankyrin repeat domain 33 isoform 2 
SPATA5L1              0.005   spermatogenesis associated 5-like 1 
CRAMP1L               0.005   Crm, cramped-like 
SLC25A41              0.005   solute carrier family 25, member 41 
ARHGEF11              0.005   Rho guanine nucleotide exchange factor (GEF) 11 isof...
ARHGEF11              0.005   Rho guanine nucleotide exchange factor (GEF) 11 isofo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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