Guide to the Human Genome
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Name: PIGN Sequence: fasta or formatted (931aa) NCBI GI: 6912500
Description:

phosphatidylinositol glycan anchor biosynthesis, class N

Referenced in:

GPI Anchoring

Other entries for this name:
alt mRNA [931aa] phosphatidylinositol glycan anchor biosynthesis, class N
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         52           2
 C cysteine            1.1         10           2
 D aspartate           4.3         40           2
 E glutamate           3.1         29           2
 F phenylalanine       8.4         78           3
 G glycine             5.3         49           1
 H histidine           2.8         26           2
 I isoleucine          5.9         55           2
 K lysine              5.3         49           2
 L leucine            14.2        132           3
 M methionine          2.9         27           2
 N asparagine          3.0         28           2
 P proline             4.2         39           3
 Q glutamine           3.1         29           2
 R arginine            3.2         30           2
 S serine              8.4         78           2
 T threonine           5.7         53           2
 V valine              8.1         75           2
 W tryptophan          2.0         19           1
 Y tyrosine            3.5         33           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   phosphatidylinositol glycan anchor biosynthesis, clas... 
PIGN                  1.000   phosphatidylinositol glycan anchor biosynthesis, cla...
PIGG                  0.021   phosphatidylinositol glycan anchor biosynthesis, cl...
PIGG                  0.021   phosphatidylinositol glycan anchor biosynthesis, cl...
PIGO                  0.014   phosphatidylinositol glycan anchor biosynthesis, cla...
PIGO                  0.014   phosphatidylinositol glycan anchor biosynthesis, cla...
ENPP4                 0.010   ectonucleotide pyrophosphatase/phosphodiesterase 4 (p...
ENPP6                 0.009   ectonucleotide pyrophosphatase/phosphodiesterase 6 [...
LOC100289996          0.005   PREDICTED: hypothetical protein XP_002347212 
LOC100287396          0.005   PREDICTED: hypothetical protein XP_002343076 
ARHGAP5               0.004   Rho GTPase activating protein 5 isoform a 
ARHGAP5               0.004   Rho GTPase activating protein 5 isoform b 
SLC6A12               0.004   solute carrier family 6 (neurotransmitter transport...
SLC6A12               0.004   solute carrier family 6 (neurotransmitter transport...
SLC6A12               0.004   solute carrier family 6 (neurotransmitter transport...
ENPP7                 0.004   ectonucleotide pyrophosphatase/phosphodiesterase 7 [...
GDAP2                 0.003   ganglioside induced differentiation associated prot...
CACNG1                0.003   voltage-dependent calcium channel gamma-1 subunit [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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