Guide to the Human Genome
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Name: LOC644070 Sequence: fasta or formatted (293aa) NCBI GI: 169211660
Description:

PREDICTED: germ cell-specific gene 1-like protein 2-like

Not currently referenced in the text

Other entries for this name:
alt mRNA {293aa} PREDICTED: germ cell-specific gene 1-like protein 2-like
alt mRNA {293aa} PREDICTED: germ cell-specific gene 1-like protein 2-like
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         24           2
 C cysteine            3.8         11           1
 D aspartate           3.8         11           2
 E glutamate           5.5         16           2
 F phenylalanine       4.4         13           1
 G glycine             7.8         23           2
 H histidine           3.1          9           1
 I isoleucine          4.1         12           1
 K lysine              3.1          9           1
 L leucine            10.6         31           4
 M methionine          2.4          7           2
 N asparagine          2.7          8           2
 P proline             4.4         13           2
 Q glutamine           5.8         17           3
 R arginine            5.1         15           2
 S serine              9.2         27           2
 T threonine           3.8         11           2
 V valine              7.5         22           2
 W tryptophan          3.4         10           1
 Y tyrosine            1.4          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: germ cell-specific gene 1-like protein 2... 
LOC644070             1.000   PREDICTED: germ cell-specific gene 1-like protein 2...
LOC644070             1.000   PREDICTED: germ cell-specific gene 1-like protein 2...
GSG1L                 0.374   GSG1-like isoform 1 
GSG1                  0.278   germ cell associated 1 isoform 2 
GSG1                  0.259   germ cell associated 1 isoform 4 
GSG1L                 0.184   GSG1-like isoform 2 
GSG1                  0.098   germ cell associated 1 isoform 1 
GSG1                  0.077   germ cell associated 1 isoform 3 
PMP22                 0.033   peripheral myelin protein 22 
PMP22                 0.033   peripheral myelin protein 22 
PMP22                 0.033   peripheral myelin protein 22 
CACNG3                0.033   voltage-dependent calcium channel gamma-3 subunit [Ho...
CACNG2                0.024   voltage-dependent calcium channel gamma-2 subunit [Ho...
CLDN1                 0.022   claudin 1 
TMEM47                0.017   transmembrane protein 47 
CACNG7                0.017   voltage-dependent calcium channel gamma-7 subunit [H...
CACNG5                0.015   voltage-dependent calcium channel gamma-5 subunit is...
CACNG8                0.012   voltage-dependent calcium channel gamma-8 subunit [H...
CLDN19                0.010   claudin 19 isoform a 
CLDN19                0.010   claudin 19 isoform b 
CACNG4                0.009   voltage-dependent calcium channel gamma-4 subunit [Ho...
SLC6A13               0.009   solute carrier family 6 (neurotransmitter transporte...
CLDND2                0.007   claudin domain containing 2 
CACNG1                0.007   voltage-dependent calcium channel gamma-1 subunit [Ho...
CACNG5                0.007   voltage-dependent calcium channel gamma-5 subunit iso...
PLEKHO2               0.005   pleckstrin homology domain containing, family O memb...
CLDN11                0.005   claudin 11 
TRPM5                 0.005   transient receptor potential cation channel, subfami...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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