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Search of human proteins with 4502347
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4502347 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 2
[Homo sapiens]
(372 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|53759113 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 2... 775 0.0
gi|4502347 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 2 ... 775 0.0
gi|13929462 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 1... 401 e-112
gi|4502349 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 3 ... 318 5e-87
gi|47078258 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 4... 282 4e-76
gi|9994175 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 4 ... 282 4e-76
gi|190570165 beta-1,4-galactosyltransferase 6 [Homo sapiens] 230 2e-60
gi|4757828 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 5 ... 230 2e-60
gi|6005952 xylosylprotein beta 1,4-galactosyltransferase 7 [Homo... 109 3e-24
gi|31542309 chondroitin sulfate synthase 1 [Homo sapiens] 48 1e-05
gi|74271903 chondroitin sulfate synthase 3 [Homo sapiens] 40 0.004
gi|223278403 glutamate receptor, ionotropic, delta 2 (Grid2) int... 39 0.006
gi|6912372 forkhead box D3 [Homo sapiens] 38 0.013
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 38 0.017
gi|239754138 PREDICTED: hypothetical protein [Homo sapiens] 37 0.037
gi|239742631 PREDICTED: hypothetical protein XP_002342600 [Homo ... 37 0.037
gi|61743948 abl-interactor 1 isoform d [Homo sapiens] 36 0.049
gi|61743946 abl-interactor 1 isoform c [Homo sapiens] 36 0.049
gi|61743944 abl-interactor 1 isoform b [Homo sapiens] 36 0.049
gi|154146199 sal-like 3 [Homo sapiens] 36 0.064
gi|163965366 nascent polypeptide-associated complex alpha subuni... 36 0.064
gi|40789265 beta 1,4-N-acetylgalactosaminyltransferase-transfera... 35 0.083
gi|11067749 bromodomain containing protein 3 [Homo sapiens] 35 0.083
gi|78042577 MAP7 domain containing 1 [Homo sapiens] 35 0.083
gi|9966803 poly(rC) binding protein 4 isoform a [Homo sapiens] 35 0.11
gi|14670373 poly(rC) binding protein 4 isoform c [Homo sapiens] 35 0.11
gi|14670369 poly(rC) binding protein 4 isoform c [Homo sapiens] 35 0.11
gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor ... 35 0.11
gi|55750053 atrophin-1 [Homo sapiens] 35 0.11
gi|55750041 atrophin-1 [Homo sapiens] 35 0.11
>gi|53759113 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 2
[Homo sapiens]
Length = 372
Score = 775 bits (2002), Expect = 0.0
Identities = 372/372 (100%), Positives = 372/372 (100%)
Query: 1 MSRLLGGTLERVCKAVLLLCLLHFLVAVILYFDVYAQHLAFFSRFSARGPAHALHPAASS 60
MSRLLGGTLERVCKAVLLLCLLHFLVAVILYFDVYAQHLAFFSRFSARGPAHALHPAASS
Sbjct: 1 MSRLLGGTLERVCKAVLLLCLLHFLVAVILYFDVYAQHLAFFSRFSARGPAHALHPAASS 60
Query: 61 SSSSSNCSRPNATASSSGLPEVPSALPGPTAPTLPPCPDSPPGLVGRLLIEFTSPMPLER 120
SSSSSNCSRPNATASSSGLPEVPSALPGPTAPTLPPCPDSPPGLVGRLLIEFTSPMPLER
Sbjct: 61 SSSSSNCSRPNATASSSGLPEVPSALPGPTAPTLPPCPDSPPGLVGRLLIEFTSPMPLER 120
Query: 121 VQRENPGVLMGGRYTPPDCTPAQTVAVIIPFRHREHHLRYWLHYLHPILRRQRLRYGVYV 180
VQRENPGVLMGGRYTPPDCTPAQTVAVIIPFRHREHHLRYWLHYLHPILRRQRLRYGVYV
Sbjct: 121 VQRENPGVLMGGRYTPPDCTPAQTVAVIIPFRHREHHLRYWLHYLHPILRRQRLRYGVYV 180
Query: 181 INQHGEDTFNRAKLLNVGFLEALKEDAAYDCFIFSDVDLVPMDDRNLYRCGDQPRHFAIA 240
INQHGEDTFNRAKLLNVGFLEALKEDAAYDCFIFSDVDLVPMDDRNLYRCGDQPRHFAIA
Sbjct: 181 INQHGEDTFNRAKLLNVGFLEALKEDAAYDCFIFSDVDLVPMDDRNLYRCGDQPRHFAIA 240
Query: 241 MDKFGFRLPYAGYFGGVSGLSKAQFLRINGFPNEYWGWGGEDDDIFNRISLTGMKISRPD 300
MDKFGFRLPYAGYFGGVSGLSKAQFLRINGFPNEYWGWGGEDDDIFNRISLTGMKISRPD
Sbjct: 241 MDKFGFRLPYAGYFGGVSGLSKAQFLRINGFPNEYWGWGGEDDDIFNRISLTGMKISRPD 300
Query: 301 IRIGRYRMIKHDRDKHNEPNPQRFTKIQNTKLTMKRDGIGSVRYQVLEVSRQPLFTNITV 360
IRIGRYRMIKHDRDKHNEPNPQRFTKIQNTKLTMKRDGIGSVRYQVLEVSRQPLFTNITV
Sbjct: 301 IRIGRYRMIKHDRDKHNEPNPQRFTKIQNTKLTMKRDGIGSVRYQVLEVSRQPLFTNITV 360
Query: 361 DIGRPPSWPPRG 372
DIGRPPSWPPRG
Sbjct: 361 DIGRPPSWPPRG 372
>gi|4502347 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 2
[Homo sapiens]
Length = 372
Score = 775 bits (2002), Expect = 0.0
Identities = 372/372 (100%), Positives = 372/372 (100%)
Query: 1 MSRLLGGTLERVCKAVLLLCLLHFLVAVILYFDVYAQHLAFFSRFSARGPAHALHPAASS 60
MSRLLGGTLERVCKAVLLLCLLHFLVAVILYFDVYAQHLAFFSRFSARGPAHALHPAASS
Sbjct: 1 MSRLLGGTLERVCKAVLLLCLLHFLVAVILYFDVYAQHLAFFSRFSARGPAHALHPAASS 60
Query: 61 SSSSSNCSRPNATASSSGLPEVPSALPGPTAPTLPPCPDSPPGLVGRLLIEFTSPMPLER 120
SSSSSNCSRPNATASSSGLPEVPSALPGPTAPTLPPCPDSPPGLVGRLLIEFTSPMPLER
Sbjct: 61 SSSSSNCSRPNATASSSGLPEVPSALPGPTAPTLPPCPDSPPGLVGRLLIEFTSPMPLER 120
Query: 121 VQRENPGVLMGGRYTPPDCTPAQTVAVIIPFRHREHHLRYWLHYLHPILRRQRLRYGVYV 180
VQRENPGVLMGGRYTPPDCTPAQTVAVIIPFRHREHHLRYWLHYLHPILRRQRLRYGVYV
Sbjct: 121 VQRENPGVLMGGRYTPPDCTPAQTVAVIIPFRHREHHLRYWLHYLHPILRRQRLRYGVYV 180
Query: 181 INQHGEDTFNRAKLLNVGFLEALKEDAAYDCFIFSDVDLVPMDDRNLYRCGDQPRHFAIA 240
INQHGEDTFNRAKLLNVGFLEALKEDAAYDCFIFSDVDLVPMDDRNLYRCGDQPRHFAIA
Sbjct: 181 INQHGEDTFNRAKLLNVGFLEALKEDAAYDCFIFSDVDLVPMDDRNLYRCGDQPRHFAIA 240
Query: 241 MDKFGFRLPYAGYFGGVSGLSKAQFLRINGFPNEYWGWGGEDDDIFNRISLTGMKISRPD 300
MDKFGFRLPYAGYFGGVSGLSKAQFLRINGFPNEYWGWGGEDDDIFNRISLTGMKISRPD
Sbjct: 241 MDKFGFRLPYAGYFGGVSGLSKAQFLRINGFPNEYWGWGGEDDDIFNRISLTGMKISRPD 300
Query: 301 IRIGRYRMIKHDRDKHNEPNPQRFTKIQNTKLTMKRDGIGSVRYQVLEVSRQPLFTNITV 360
IRIGRYRMIKHDRDKHNEPNPQRFTKIQNTKLTMKRDGIGSVRYQVLEVSRQPLFTNITV
Sbjct: 301 IRIGRYRMIKHDRDKHNEPNPQRFTKIQNTKLTMKRDGIGSVRYQVLEVSRQPLFTNITV 360
Query: 361 DIGRPPSWPPRG 372
DIGRPPSWPPRG
Sbjct: 361 DIGRPPSWPPRG 372
>gi|13929462 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 1,
membrane-bound form [Homo sapiens]
Length = 398
Score = 401 bits (1030), Expect = e-112
Identities = 206/383 (53%), Positives = 249/383 (65%), Gaps = 24/383 (6%)
Query: 6 GGTLERVCKAVLLLCLLHFLVAVILYFD----VYAQHLAFFSRFSARGPAHALHPAASSS 61
G +L+R C+ ++ +C LH V ++ Y L S G A SS
Sbjct: 16 GASLQRACRLLVAVCALHLGVTLVYYLAGRDLSRLPQLVGVSTPLQGGSNSAAAIGQSSG 75
Query: 62 SSSSNCSRPNATASSSGLPE-------VPSALPGP------------TAPTLPPCPDSPP 102
+ +RP +S P V + PGP TA +LP CP+ P
Sbjct: 76 ELRTGGARPPPPLGASSQPRPGGDSSPVVDSGPGPASNLTSVPVPHTTALSLPACPEESP 135
Query: 103 GLVGRLLIEFTSPMPLERVQRENPGVLMGGRYTPPDCTPAQTVAVIIPFRHREHHLRYWL 162
LVG +LIEF P+ LE V ++NP V MGGRY P DC VA+IIPFR+R+ HL+YWL
Sbjct: 136 LLVGPMLIEFNMPVDLELVAKQNPNVKMGGRYAPRDCVSPHKVAIIIPFRNRQEHLKYWL 195
Query: 163 HYLHPILRRQRLRYGVYVINQHGEDTFNRAKLLNVGFLEALKEDAAYDCFIFSDVDLVPM 222
+YLHP+L+RQ+L YG+YVINQ G+ FNRAKLLNVGF EALK D Y CF+FSDVDL+PM
Sbjct: 196 YYLHPVLQRQQLDYGIYVINQAGDTIFNRAKLLNVGFQEALK-DYDYTCFVFSDVDLIPM 254
Query: 223 DDRNLYRCGDQPRHFAIAMDKFGFRLPYAGYFGGVSGLSKAQFLRINGFPNEYWGWGGED 282
+D N YRC QPRH ++AMDKFGF LPY YFGGVS LSK QFL INGFPN YWGWGGED
Sbjct: 255 NDHNAYRCFSQPRHISVAMDKFGFSLPYVQYFGGVSALSKQQFLTINGFPNNYWGWGGED 314
Query: 283 DDIFNRISLTGMKISRPDIRIGRYRMIKHDRDKHNEPNPQRFTKIQNTKLTMKRDGIGSV 342
DDIFNR+ GM ISRP+ +GR RMI+H RDK NEPNPQRF +I +TK TM DG+ S+
Sbjct: 315 DDIFNRLVFRGMSISRPNAVVGRCRMIRHSRDKKNEPNPQRFDRIAHTKETMLSDGLNSL 374
Query: 343 RYQVLEVSRQPLFTNITVDIGRP 365
YQVL+V R PL+T ITVDIG P
Sbjct: 375 TYQVLDVQRYPLYTQITVDIGTP 397
>gi|4502349 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 3
[Homo sapiens]
Length = 393
Score = 318 bits (815), Expect = 5e-87
Identities = 158/295 (53%), Positives = 196/295 (66%), Gaps = 3/295 (1%)
Query: 77 SGLPEVPSALPGPTAPT-LPPCPDSPPGLVGRLLIEFTSPMPLERVQRENPGVLMGGRYT 135
S L +P A GP AP LP CP+ P LVG + + F+ L + NP V GGRY
Sbjct: 56 SNLSHLPGAPGGPPAPQGLPYCPERSPLLVGPVSVSFSPVPSLAEIVERNPRVEPGGRYR 115
Query: 136 PPDCTPAQTVAVIIPFRHREHHLRYWLHYLHPILRRQRLRYGVYVINQHGEDTFNRAKLL 195
P C P A+I+P R REHHLR L++LHP L+RQ+L YG+YVI+Q G TFNRAKLL
Sbjct: 116 PAGCEPRSRTAIIVPHRAREHHLRLLLYHLHPFLQRQQLAYGIYVIHQAGNGTFNRAKLL 175
Query: 196 NVGFLEALKEDAAYDCFIFSDVDLVPMDDRNLYRCGDQ-PRHFAIAMDKFGFRLPYAGYF 254
NVG EAL+ D +DC DVDL+P +D NLY C + PRH A+AM+KFG+ LPY YF
Sbjct: 176 NVGVREALR-DEEWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYF 234
Query: 255 GGVSGLSKAQFLRINGFPNEYWGWGGEDDDIFNRISLTGMKISRPDIRIGRYRMIKHDRD 314
GGVS L+ Q+L++NGFPNEYWGWGGEDDDI R+ L GMKISRP +G Y+M+KH D
Sbjct: 235 GGVSALTPDQYLKMNGFPNEYWGWGGEDDDIATRVRLAGMKISRPPTSVGHYKMVKHRGD 294
Query: 315 KHNEPNPQRFTKIQNTKLTMKRDGIGSVRYQVLEVSRQPLFTNITVDIGRPPSWP 369
K NE NP RF + T+ + +DG+ S+ YQ+L PL+TNIT DIG P P
Sbjct: 295 KGNEENPHRFDLLVRTQNSWTQDGMNSLTYQLLARELGPLYTNITADIGTDPRGP 349
>gi|47078258 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 4
[Homo sapiens]
Length = 344
Score = 282 bits (721), Expect = 4e-76
Identities = 137/268 (51%), Positives = 178/268 (66%), Gaps = 2/268 (0%)
Query: 94 LPPCPDSPPGLVGRLLIEFTSPMPLERVQRENPGVLMGGRYTPPDCTPAQTVAVIIPFRH 153
L CP P L G+ + F + LE VQ ENP V G RY P +C Q VA+++P R+
Sbjct: 74 LDNCPSVSPYLRGQSKLIFKPDLTLEEVQAENPKVSRG-RYRPQECKALQRVAILVPHRN 132
Query: 154 REHHLRYWLHYLHPILRRQRLRYGVYVINQHGEDTFNRAKLLNVGFLEALKEDAAYDCFI 213
RE HL Y L +LHP L+RQ+L YG+YVI+Q FNRAKLLNVG+LEALKE+ +DCFI
Sbjct: 133 REKHLMYLLEHLHPFLQRQQLDYGIYVIHQAEGKKFNRAKLLNVGYLEALKEEN-WDCFI 191
Query: 214 FSDVDLVPMDDRNLYRCGDQPRHFAIAMDKFGFRLPYAGYFGGVSGLSKAQFLRINGFPN 273
F DVDLVP +D NLY+C + P+H + + G+RL Y+GYFGGV+ LS+ QF ++NGF N
Sbjct: 192 FHDVDLVPENDFNLYKCEEHPKHLVVGRNSTGYRLRYSGYFGGVTALSREQFFKVNGFSN 251
Query: 274 EYWGWGGEDDDIFNRISLTGMKISRPDIRIGRYRMIKHDRDKHNEPNPQRFTKIQNTKLT 333
YWGWGGEDDD+ R+ L MKISRP +G+Y M+ H RDK NE N +R +
Sbjct: 252 NYWGWGGEDDDLRLRVELQRMKISRPLPEVGKYTMVFHTRDKGNEVNAERMKLLHQVSRV 311
Query: 334 MKRDGIGSVRYQVLEVSRQPLFTNITVD 361
+ DG+ S Y+++ V PL+ NITVD
Sbjct: 312 WRTDGLSSCSYKLVSVEHNPLYINITVD 339
>gi|9994175 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 4
[Homo sapiens]
Length = 344
Score = 282 bits (721), Expect = 4e-76
Identities = 137/268 (51%), Positives = 178/268 (66%), Gaps = 2/268 (0%)
Query: 94 LPPCPDSPPGLVGRLLIEFTSPMPLERVQRENPGVLMGGRYTPPDCTPAQTVAVIIPFRH 153
L CP P L G+ + F + LE VQ ENP V G RY P +C Q VA+++P R+
Sbjct: 74 LDNCPSVSPYLRGQSKLIFKPDLTLEEVQAENPKVSRG-RYRPQECKALQRVAILVPHRN 132
Query: 154 REHHLRYWLHYLHPILRRQRLRYGVYVINQHGEDTFNRAKLLNVGFLEALKEDAAYDCFI 213
RE HL Y L +LHP L+RQ+L YG+YVI+Q FNRAKLLNVG+LEALKE+ +DCFI
Sbjct: 133 REKHLMYLLEHLHPFLQRQQLDYGIYVIHQAEGKKFNRAKLLNVGYLEALKEEN-WDCFI 191
Query: 214 FSDVDLVPMDDRNLYRCGDQPRHFAIAMDKFGFRLPYAGYFGGVSGLSKAQFLRINGFPN 273
F DVDLVP +D NLY+C + P+H + + G+RL Y+GYFGGV+ LS+ QF ++NGF N
Sbjct: 192 FHDVDLVPENDFNLYKCEEHPKHLVVGRNSTGYRLRYSGYFGGVTALSREQFFKVNGFSN 251
Query: 274 EYWGWGGEDDDIFNRISLTGMKISRPDIRIGRYRMIKHDRDKHNEPNPQRFTKIQNTKLT 333
YWGWGGEDDD+ R+ L MKISRP +G+Y M+ H RDK NE N +R +
Sbjct: 252 NYWGWGGEDDDLRLRVELQRMKISRPLPEVGKYTMVFHTRDKGNEVNAERMKLLHQVSRV 311
Query: 334 MKRDGIGSVRYQVLEVSRQPLFTNITVD 361
+ DG+ S Y+++ V PL+ NITVD
Sbjct: 312 WRTDGLSSCSYKLVSVEHNPLYINITVD 339
>gi|190570165 beta-1,4-galactosyltransferase 6 [Homo sapiens]
Length = 382
Score = 230 bits (586), Expect = 2e-60
Identities = 138/370 (37%), Positives = 205/370 (55%), Gaps = 24/370 (6%)
Query: 11 RVCKAVLLLCLLHF-LVAVILYFDVYAQHLA--FFSRFSARGP---------AHALHPAA 58
RV LL + F L + LYF A +A + ARG H +
Sbjct: 9 RVSNRSLLAFIFFFSLSSSCLYFIYVAPGIANTYLFMVQARGIMLRENVKTIGHMIRLYT 68
Query: 59 SSSSSSSNCSRPNATASSSGLPEVPSALPGP-TAPTLPPCPDSPPGLVGRLLIEFTSPM- 116
+ +S+ + P SS L + + LP T PCP+ P + G L + +
Sbjct: 69 NKNSTLNGTDYPEGNNSSDYLVQTTTYLPENFTYSPYLPCPEKLPYMRGFLNVNVSEVSF 128
Query: 117 -PLERVQRENPGVLMGGRYTPPDCTPAQTVAVIIPFRHREHHLRYWLHYLHPILRRQRLR 175
+ ++ ++ + GG + P DC P VAV+IPFR+R HL + +L P+L++QRL
Sbjct: 129 DEIHQLFSKDLDIEPGGHWRPKDCKPRWKVAVLIPFRNRHEHLPIFFLHLIPMLQKQRLE 188
Query: 176 YGVYVINQHGEDTFNRAKLLNVGFLEALKEDAAYDCFIFSDVDLVPMDDRNLYRCGDQPR 235
+ YVI Q G FNRA L NVGF EA+K D+ +DC IF DVD +P +DRN Y CG+ PR
Sbjct: 189 FAFYVIEQTGTQPFNRAMLFNVGFKEAMK-DSVWDCVIFHDVDHLPENDRNYYGCGEMPR 247
Query: 236 HFAIAMDKFGFRLPYAGYFGGVSGLSKAQFLRINGFPNEYWGWGGEDDDIFNRISLTGMK 295
HFA +DK+ + LPY +FGGVSGL+ QF +INGFPN +WGWGGEDDD++NR+ G
Sbjct: 248 HFAAKLDKYMYILPYKEFFGGVSGLTVEQFRKINGFPNAFWGWGGEDDDLWNRVHYAGYN 307
Query: 296 ISRPDIRIGRYRMIKHDRDKHNEPNPQ---RFTKIQNTKLTMKRDGIGSVRYQVLEVSRQ 352
++RP+ +G+Y+ I H H+ Q R+ ++ +K DG+ ++ Y+ ++
Sbjct: 308 VTRPEGDLGKYKSIPH----HHRGEVQFLGRYKLLRYSKERQYIDGLNNLIYRP-KILVD 362
Query: 353 PLFTNITVDI 362
L+TNI+V++
Sbjct: 363 RLYTNISVNL 372
>gi|4757828 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 5
[Homo sapiens]
Length = 388
Score = 230 bits (586), Expect = 2e-60
Identities = 116/272 (42%), Positives = 167/272 (61%), Gaps = 13/272 (4%)
Query: 97 CPDSPPGLVGRLLIEFTSPMPLERVQR---ENPGVLMGGRYTPPDCTPAQTVAVIIPFRH 153
CP+ P + G + I S + ++ + ++P + +GG + P DC P VA++IPFR+
Sbjct: 114 CPERLPSMKGPIDINM-SEIGMDYIHELFSKDPTIKLGGHWKPSDCMPRWKVAILIPFRN 172
Query: 154 REHHLRYWLHYLHPILRRQRLRYGVYVINQHGEDTFNRAKLLNVGFLEALKEDAAYDCFI 213
R HL +L P+L+RQRL++ YV+ Q G FNRA L NVGF EA+K D +DC I
Sbjct: 173 RHEHLPVLFRHLLPMLQRQRLQFAFYVVEQVGTQPFNRAMLFNVGFQEAMK-DLDWDCLI 231
Query: 214 FSDVDLVPMDDRNLYRCGDQPRHFAIAMDKFGFRLPYAGYFGGVSGLSKAQFLRINGFPN 273
F DVD +P DRN Y CG PRHFA +DK+ + LPY +FGGVSGL+ QF +INGFPN
Sbjct: 232 FHDVDHIPESDRNYYGCGQMPRHFATKLDKYMYLLPYTEFFGGVSGLTVEQFRKINGFPN 291
Query: 274 EYWGWGGEDDDIFNRISLTGMKISRPDIRIGRYRMIKHDRDKHNEPNPQ---RFTKIQNT 330
+WGWGGEDDD++NR+ G +SRP+ G+Y+ I H H+ Q R+ ++ +
Sbjct: 292 AFWGWGGEDDDLWNRVQNAGYSVSRPEGDTGKYKSIPH----HHRGEVQFLGRYALLRKS 347
Query: 331 KLTMKRDGIGSVRYQVLEVSRQPLFTNITVDI 362
K DG+ ++ Y ++ L+ NITV++
Sbjct: 348 KERQGLDGLNNLNY-FANITYDALYKNITVNL 378
>gi|6005952 xylosylprotein beta 1,4-galactosyltransferase 7 [Homo
sapiens]
Length = 327
Score = 109 bits (273), Expect = 3e-24
Identities = 65/204 (31%), Positives = 107/204 (52%), Gaps = 6/204 (2%)
Query: 145 VAVIIPFRHREHHLRYWLHYLHPILRRQRLRYGVYVINQHGEDTFNRAKLLNVGFLEALK 204
+AV++PFR R L ++ ++ L R+++R+ +YV+NQ FNRA L+NVGFLE+
Sbjct: 95 LAVLVPFRERFEELLVFVPHMRRFLSRKKIRHHIYVLNQVDHFRFNRAALINVGFLESSN 154
Query: 205 EDAAYDCFIFSDVDLVPMDDRNLYRCGDQPRHFAIAMDKFGFRLPYAGYFGGVSGLSKAQ 264
D DVDL+P+++ Y + F +A + Y Y GG+ LSK
Sbjct: 155 ST---DYIAMHDVDLLPLNEELDYGF-PEAGPFHVASPELHPLYHYKTYVGGILLLSKQH 210
Query: 265 FLRINGFPNEYWGWGGEDDDIFNRISLTGMKISRPDIRIGRYRMIKHDRD-KHNEPNPQR 323
+ NG N +WGWG EDD+ + RI G+++ RP Y+ +H D + + +R
Sbjct: 211 YRLCNGMSNRFWGWGREDDEFYRRIKGAGLQLFRPSGITTGYKTFRHLHDPAWRKRDQKR 270
Query: 324 FTKIQNTKLTMKRD-GIGSVRYQV 346
+ + + R+ G+ +V+Y V
Sbjct: 271 IAAQKQEQFKVDREGGLNTVKYHV 294
>gi|31542309 chondroitin sulfate synthase 1 [Homo sapiens]
Length = 802
Score = 48.1 bits (113), Expect = 1e-05
Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 34/158 (21%)
Query: 168 ILRRQRLRY---GVYVINQHGEDTFNRAKLLNVGFLEALKEDAAYDCFIFSDVDLVPMDD 224
++R R++Y + ++ GE F+RA L VG + E + C DVDLV
Sbjct: 586 LMRDYRIKYPKADMQILPVSGE--FSRALALEVGSSQFNNESLLFFC----DVDLV-FTT 638
Query: 225 RNLYRCG-----DQPRHFAIAMDKFGFRLPYAG-------------------YFGGVSGL 260
L RC Q +F I ++ ++ Y+G Y G++ +
Sbjct: 639 EFLQRCRANTVLGQQIYFPIIFSQYDPKIVYSGKVPSDNHFAFTQKTGFWRNYGFGITCI 698
Query: 261 SKAQFLRINGFPNEYWGWGGEDDDIFNRISLTGMKISR 298
K +R+ GF GWG ED D+FN++ G+K R
Sbjct: 699 YKGDLVRVGGFDVSIQGWGLEDVDLFNKVVQAGLKTFR 736
>gi|74271903 chondroitin sulfate synthase 3 [Homo sapiens]
Length = 882
Score = 39.7 bits (91), Expect = 0.004
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 25/107 (23%)
Query: 213 IFSDVDLVPMDDRNLYRCGD-----QPRHFAIAMDKFGFRLPYAG--------------- 252
+F DVDL+ +D L RC D Q ++ I ++ ++ G
Sbjct: 715 LFCDVDLIFREDF-LQRCRDNTIQGQQVYYPIIFSQYDPKVTNGGNPPTDDYFIFSKKTG 773
Query: 253 ----YFGGVSGLSKAQFLRINGFPNEYWGWGGEDDDIFNRISLTGMK 295
Y G++ + K+ L GF GWG ED D++N++ L+G++
Sbjct: 774 FWRDYGYGITCIYKSDLLGAGGFDTSIQGWGLEDVDLYNKVILSGLR 820
>gi|223278403 glutamate receptor, ionotropic, delta 2 (Grid2)
interacting protein [Homo sapiens]
Length = 1211
Score = 39.3 bits (90), Expect = 0.006
Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 50 PAHALHPAASS--SSSSSNCSRPNATASSSGLPEVPSALPGPTAPTLPPCPDSPPGLVGR 107
P+ HP S +S SS+ S P A+ SS P P PGP P PP PD R
Sbjct: 607 PSPCYHPLCSGGLASPSSSESHPYASLDSSRAPS-PQPGPGPICPDSPPSPDPTRPPSRR 665
Query: 108 LLIEFTSPM 116
L F+ P+
Sbjct: 666 KLFTFSHPV 674
Score = 32.3 bits (72), Expect = 0.70
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 58 ASSSSSSSNCSRPNATASSSGLPEVPSALPGPTAPTL-PPCPDSPPGL---VGRLLIEFT 113
A SS SS+ SR A A + L ++ +P P P L PP P +PP L +G E T
Sbjct: 767 AKPSSRSSDGSRGPAQALAKPLTQLSHPVPPPPPPPLPPPVPCAPPMLSRGLGHRRSE-T 825
Query: 114 SPMPLERVQRE 124
S M ++R++ E
Sbjct: 826 SHMSVKRLRWE 836
>gi|6912372 forkhead box D3 [Homo sapiens]
Length = 478
Score = 38.1 bits (87), Expect = 0.013
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 49 GPAHALHPAASSSSSSSNCSRPNATASSSGLPEVPSALPGPTAPTLPPC-PDSPPGLVGR 107
G + LHPAA++ + S + A A+++ + P ALP P AP LPP P P G +GR
Sbjct: 272 GRPYGLHPAAAAGAYSHPAAA--AAAAAAAALQYPYALP-PVAPVLPPAVPLLPSGELGR 328
Query: 108 LLIEFTSPM 116
F S +
Sbjct: 329 KAAAFGSQL 337
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 37.7 bits (86), Expect = 0.017
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 43 SRFSARGPAHALHPAASSSSSSSNCSRPNATASSSGLPEVPSALPGPTAPTLPPCPDSPP 102
S S+ + + ++SSSSSSS+ S ++++SSS A PGP A P P PP
Sbjct: 2610 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPP 2669
Score = 30.0 bits (66), Expect = 3.5
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 17/101 (16%)
Query: 43 SRFSARGPAHALHPAASSSSSSSNCSRPNATASSSGLPEVPSALPGPTAPTLPPCPDSPP 102
S +A PA ++SSSSSSS+ S ++++SSS S+ +LP P+
Sbjct: 2519 SALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSS--SSGSSSSDSEGSSLPVQPE--- 2573
Query: 103 GLVGRLLIEFTSPMPLERVQRENPGVLMGGRYTPPDCTPAQ 143
V + +P P E V+ GR PP+ TPA+
Sbjct: 2574 --VALKRVPSPTPAPKEAVRE--------GR--PPEPTPAK 2602
>gi|239754138 PREDICTED: hypothetical protein [Homo sapiens]
Length = 274
Score = 36.6 bits (83), Expect = 0.037
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 50 PAHALHPAASSSSSSSNC-------SRPNATASSSGLP-EVPSALPGPTAPTLPPCPDSP 101
P+ +HPA S+ S C SR + +S LP + P ALPG P PP P +P
Sbjct: 21 PSSLIHPARSNQPPSRTCPPLPGPPSRSRSPSSRLKLPADPPRALPGSPEPPPPPPPAAP 80
Query: 102 PGLVGRL 108
L R+
Sbjct: 81 HVLGARV 87
>gi|239742631 PREDICTED: hypothetical protein XP_002342600 [Homo
sapiens]
Length = 274
Score = 36.6 bits (83), Expect = 0.037
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 50 PAHALHPAASSSSSSSNC-------SRPNATASSSGLP-EVPSALPGPTAPTLPPCPDSP 101
P+ +HPA S+ S C SR + +S LP + P ALPG P PP P +P
Sbjct: 21 PSSLIHPARSNQPPSRTCPPLPGPPSRSRSPSSRLKLPADPPRALPGSPEPPPPPPPAAP 80
Query: 102 PGLVGRL 108
L R+
Sbjct: 81 HVLGARV 87
>gi|61743948 abl-interactor 1 isoform d [Homo sapiens]
Length = 476
Score = 36.2 bits (82), Expect = 0.049
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 56 PAASSSSSSSNCSRPNATASSSGLPEVPSALPGPTAPTL-PPCPDSPPG 103
P S SS + SR N+ +SS G +P A+P P+ PT+ P P S PG
Sbjct: 231 PRTHSGSSGGSGSRENSGSSSIG---IPIAVPTPSPPTIGPAAPGSAPG 276
>gi|61743946 abl-interactor 1 isoform c [Homo sapiens]
Length = 452
Score = 36.2 bits (82), Expect = 0.049
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 56 PAASSSSSSSNCSRPNATASSSGLPEVPSALPGPTAPTL-PPCPDSPPG 103
P S SS + SR N+ +SS G +P A+P P+ PT+ P P S PG
Sbjct: 236 PRTHSGSSGGSGSRENSGSSSIG---IPIAVPTPSPPTIGPAAPGSAPG 281
>gi|61743944 abl-interactor 1 isoform b [Homo sapiens]
Length = 481
Score = 36.2 bits (82), Expect = 0.049
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 56 PAASSSSSSSNCSRPNATASSSGLPEVPSALPGPTAPTL-PPCPDSPPG 103
P S SS + SR N+ +SS G +P A+P P+ PT+ P P S PG
Sbjct: 236 PRTHSGSSGGSGSRENSGSSSIG---IPIAVPTPSPPTIGPAAPGSAPG 281
>gi|154146199 sal-like 3 [Homo sapiens]
Length = 1300
Score = 35.8 bits (81), Expect = 0.064
Identities = 36/111 (32%), Positives = 46/111 (41%), Gaps = 9/111 (8%)
Query: 46 SARGPAHALH---PAASSSSSSSN-CSRPNATASSSGLPEVPSALPGPTAPTLPPCPDSP 101
SA PA A+ PAA ++ + SRP + AS+ G P PSA P AP+ P P +P
Sbjct: 267 SAGAPAAAIAGSGPAAPAAFEGAQPLSRPESGASTPGGPAEPSA---PAAPSAAPAPAAP 323
Query: 102 PGLVGRLLIEFTSPMPLERVQRENPGVLMGGRYTPPDCTPAQTVA--VIIP 150
+ P PG L+G P QT A VI P
Sbjct: 324 APAPAPQSAASSQPQSASTPPALAPGSLLGAAPGLPSPLLPQTSASGVIFP 374
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 35.8 bits (81), Expect = 0.064
Identities = 33/105 (31%), Positives = 37/105 (35%), Gaps = 19/105 (18%)
Query: 56 PAASSSSSSSNCSRPNATASSSGLPEVPSALPGPTAPT-----------LPPCP------ 98
PA + S + P T SS G P PS+ GPT P PP P
Sbjct: 1336 PAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPAI 1395
Query: 99 DSPPGLVGRLLIEFTSP--MPLERVQRENPGVLMGGRYTPPDCTP 141
SP G + SP P V RE G TPP TP
Sbjct: 1396 PSPKGDPTSPAVIPLSPKKAPATPVTREGAATPSKGDLTPPAVTP 1440
Score = 33.1 bits (74), Expect = 0.41
Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 50 PAHALHPAASSSSSSSNCSRPNATASSSGLPEVPSALPGPTAP-TLPPCPDSPP 102
PA PA S +SSS +R AT + G+P PS PT P PP P P
Sbjct: 903 PAPKQAPALSMTSSSPKKAR--ATPAPKGIPASPSPKGAPTPPAATPPSPKGGP 954
Score = 29.6 bits (65), Expect = 4.6
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 72 ATASSSGLPEVPSALPGPTAPTL-PPCPDSPP 102
AT++ G P PS+ PT P + PP P PP
Sbjct: 1448 ATSAPKGGPATPSSKGDPTLPAVTPPSPKEPP 1479
>gi|40789265 beta 1,4-N-acetylgalactosaminyltransferase-transferase 4
[Homo sapiens]
Length = 1039
Score = 35.4 bits (80), Expect = 0.083
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 11/75 (14%)
Query: 230 CGDQPRHFAIAMDKFGFRLPYAGYFGGVSGLSKAQFLRINGFPNEYWG--WGGEDDDIFN 287
CG PR + GF G+ G+ K+ F R+ G E + WGGED ++ +
Sbjct: 948 CGSSPRDPHGYWEVNGF---------GLFGIYKSDFDRVGGMNTEEFRDQWGGEDWELLD 998
Query: 288 RISLTGMKISRPDIR 302
R+ G+++ R +R
Sbjct: 999 RVLQAGLEVERLRLR 1013
>gi|11067749 bromodomain containing protein 3 [Homo sapiens]
Length = 726
Score = 35.4 bits (80), Expect = 0.083
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 37 QHLAFFSRFSARGPAHALHPAASSSSSSSNCSRPNATASSSGLPEVPSALPGPTA-PTLP 95
Q +A S S P ++ P S + + P TA+ + +P P+A P P A P +P
Sbjct: 169 QQVAAVSSVSPATPFQSVPPTVSQTPVIAATPVPTITANVTSVPVPPAAAPPPPATPIVP 228
Query: 96 PCPDSPP 102
P +PP
Sbjct: 229 VVPPTPP 235
>gi|78042577 MAP7 domain containing 1 [Homo sapiens]
Length = 841
Score = 35.4 bits (80), Expect = 0.083
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 10/75 (13%)
Query: 50 PAHALHPAASSSSSSSNCSRPNATASSSGLPEVPSALPGPTAPTLPPCPDSPPGLVGRLL 109
P L + +S S + +RP++ ++S P P PGP TLPP P SP G
Sbjct: 447 PRARLSASTASELSPKSKARPSSPSTSWHRPASPCPSPGP-GHTLPPKPPSPRG------ 499
Query: 110 IEFTSPMPLERVQRE 124
T+ P RV+R+
Sbjct: 500 ---TTASPKGRVRRK 511
Score = 30.4 bits (67), Expect = 2.7
Identities = 16/60 (26%), Positives = 22/60 (36%)
Query: 56 PAASSSSSSSNCSRPNATASSSGLPEVPSALPGPTAPTLPPCPDSPPGLVGRLLIEFTSP 115
P+A+ S R + S P P+ P P+ PP + PP TSP
Sbjct: 518 PSAAGPEDKSQSKRRASNEKESAAPASPAPSPAPSPTPAPPQKEQPPAETPTDAAVLTSP 577
>gi|9966803 poly(rC) binding protein 4 isoform a [Homo sapiens]
Length = 424
Score = 35.0 bits (79), Expect = 0.11
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 72 ATASSSGLPE-VPSALPGPTAPTLPPCPDSPPGLVGR----LLIEF--TSPMPLERVQRE 124
A ++S G P P+ LP P +P L P +PPGL+G L F PMP +
Sbjct: 333 AKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGTPYAISLSNFIGLKPMPFLALPPA 392
Query: 125 NPG 127
+PG
Sbjct: 393 SPG 395
>gi|14670373 poly(rC) binding protein 4 isoform c [Homo sapiens]
Length = 403
Score = 35.0 bits (79), Expect = 0.11
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 72 ATASSSGLPE-VPSALPGPTAPTLPPCPDSPPGLVGR----LLIEF--TSPMPLERVQRE 124
A ++S G P P+ LP P +P L P +PPGL+G L F PMP +
Sbjct: 312 AKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGTPYAISLSNFIGLKPMPFLALPPA 371
Query: 125 NPG 127
+PG
Sbjct: 372 SPG 374
>gi|14670369 poly(rC) binding protein 4 isoform c [Homo sapiens]
Length = 403
Score = 35.0 bits (79), Expect = 0.11
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 72 ATASSSGLPE-VPSALPGPTAPTLPPCPDSPPGLVGR----LLIEF--TSPMPLERVQRE 124
A ++S G P P+ LP P +P L P +PPGL+G L F PMP +
Sbjct: 312 AKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGTPYAISLSNFIGLKPMPFLALPPA 371
Query: 125 NPG 127
+PG
Sbjct: 372 SPG 374
>gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor
[Homo sapiens]
Length = 1336
Score = 35.0 bits (79), Expect = 0.11
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Query: 25 LVAVILYFDVYA-QHLAFFSRFSARGPAHALHPAASSSSSSSNCSRPNATASSSGLPEVP 83
LVA+ L V+A +HL ++ GP H + + S +C A + P P
Sbjct: 853 LVAMGLSLLVFAWEHLVYWRLRHCLGPTHRMDFLLAFSRGMYSCCSAEAAPPPAKPPPPP 912
Query: 84 SALPGPTAPTLPPCPDSPP 102
LP P P P P P
Sbjct: 913 QPLPSPAYPAPRPAPGPAP 931
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 35.0 bits (79), Expect = 0.11
Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 22/112 (19%)
Query: 57 AASSSSSSSNCSRPNATASSSGLPEVPSALPGPTAPTLPPCPDSPPGLVGRLLIEFTSP- 115
AA+SSSSSS+ S + +S LP P + P PT+ ++ + PP ++T P
Sbjct: 383 AAASSSSSSSSSSASPFPASQALPSYPHSFPPPTSLSV---SNQPP--------KYTQPS 431
Query: 116 MPLERVQRENP-------GVLMGGRYTP---PDCTPAQTVAVIIPFRHREHH 157
+P + V + P +L P P T AQ+ A H HH
Sbjct: 432 LPSQAVWSQGPPPPPPYGRLLANSNAHPGPFPPSTGAQSTAHPPVSTHHHHH 483
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 35.0 bits (79), Expect = 0.11
Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 22/112 (19%)
Query: 57 AASSSSSSSNCSRPNATASSSGLPEVPSALPGPTAPTLPPCPDSPPGLVGRLLIEFTSP- 115
AA+SSSSSS+ S + +S LP P + P PT+ ++ + PP ++T P
Sbjct: 383 AAASSSSSSSSSSASPFPASQALPSYPHSFPPPTSLSV---SNQPP--------KYTQPS 431
Query: 116 MPLERVQRENP-------GVLMGGRYTP---PDCTPAQTVAVIIPFRHREHH 157
+P + V + P +L P P T AQ+ A H HH
Sbjct: 432 LPSQAVWSQGPPPPPPYGRLLANSNAHPGPFPPSTGAQSTAHPPVSTHHHHH 483
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.141 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,409,058
Number of Sequences: 37866
Number of extensions: 873281
Number of successful extensions: 8493
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 222
Number of HSP's that attempted gapping in prelim test: 7033
Number of HSP's gapped (non-prelim): 1451
length of query: 372
length of database: 18,247,518
effective HSP length: 104
effective length of query: 268
effective length of database: 14,309,454
effective search space: 3834933672
effective search space used: 3834933672
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.