Guide to the Human Genome
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Search of human proteins with 4502347

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4502347 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 2
[Homo sapiens]
         (372 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|53759113 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 2...   775   0.0  
gi|4502347 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 2 ...   775   0.0  
gi|13929462 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 1...   401   e-112
gi|4502349 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 3 ...   318   5e-87
gi|47078258 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 4...   282   4e-76
gi|9994175 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 4 ...   282   4e-76
gi|190570165 beta-1,4-galactosyltransferase 6 [Homo sapiens]          230   2e-60
gi|4757828 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 5 ...   230   2e-60
gi|6005952 xylosylprotein beta 1,4-galactosyltransferase 7 [Homo...   109   3e-24
gi|31542309 chondroitin sulfate synthase 1 [Homo sapiens]              48   1e-05
gi|74271903 chondroitin sulfate synthase 3 [Homo sapiens]              40   0.004
gi|223278403 glutamate receptor, ionotropic, delta 2 (Grid2) int...    39   0.006
gi|6912372 forkhead box D3 [Homo sapiens]                              38   0.013
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]        38   0.017
gi|239754138 PREDICTED: hypothetical protein [Homo sapiens]            37   0.037
gi|239742631 PREDICTED: hypothetical protein XP_002342600 [Homo ...    37   0.037
gi|61743948 abl-interactor 1 isoform d [Homo sapiens]                  36   0.049
gi|61743946 abl-interactor 1 isoform c [Homo sapiens]                  36   0.049
gi|61743944 abl-interactor 1 isoform b [Homo sapiens]                  36   0.049
gi|154146199 sal-like 3 [Homo sapiens]                                 36   0.064
gi|163965366 nascent polypeptide-associated complex alpha subuni...    36   0.064
gi|40789265 beta 1,4-N-acetylgalactosaminyltransferase-transfera...    35   0.083
gi|11067749 bromodomain containing protein 3 [Homo sapiens]            35   0.083
gi|78042577 MAP7 domain containing 1 [Homo sapiens]                    35   0.083
gi|9966803 poly(rC) binding protein 4 isoform a [Homo sapiens]         35   0.11 
gi|14670373 poly(rC) binding protein 4 isoform c [Homo sapiens]        35   0.11 
gi|14670369 poly(rC) binding protein 4 isoform c [Homo sapiens]        35   0.11 
gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor ...    35   0.11 
gi|55750053 atrophin-1 [Homo sapiens]                                  35   0.11 
gi|55750041 atrophin-1 [Homo sapiens]                                  35   0.11 

>gi|53759113 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 2
           [Homo sapiens]
          Length = 372

 Score =  775 bits (2002), Expect = 0.0
 Identities = 372/372 (100%), Positives = 372/372 (100%)

Query: 1   MSRLLGGTLERVCKAVLLLCLLHFLVAVILYFDVYAQHLAFFSRFSARGPAHALHPAASS 60
           MSRLLGGTLERVCKAVLLLCLLHFLVAVILYFDVYAQHLAFFSRFSARGPAHALHPAASS
Sbjct: 1   MSRLLGGTLERVCKAVLLLCLLHFLVAVILYFDVYAQHLAFFSRFSARGPAHALHPAASS 60

Query: 61  SSSSSNCSRPNATASSSGLPEVPSALPGPTAPTLPPCPDSPPGLVGRLLIEFTSPMPLER 120
           SSSSSNCSRPNATASSSGLPEVPSALPGPTAPTLPPCPDSPPGLVGRLLIEFTSPMPLER
Sbjct: 61  SSSSSNCSRPNATASSSGLPEVPSALPGPTAPTLPPCPDSPPGLVGRLLIEFTSPMPLER 120

Query: 121 VQRENPGVLMGGRYTPPDCTPAQTVAVIIPFRHREHHLRYWLHYLHPILRRQRLRYGVYV 180
           VQRENPGVLMGGRYTPPDCTPAQTVAVIIPFRHREHHLRYWLHYLHPILRRQRLRYGVYV
Sbjct: 121 VQRENPGVLMGGRYTPPDCTPAQTVAVIIPFRHREHHLRYWLHYLHPILRRQRLRYGVYV 180

Query: 181 INQHGEDTFNRAKLLNVGFLEALKEDAAYDCFIFSDVDLVPMDDRNLYRCGDQPRHFAIA 240
           INQHGEDTFNRAKLLNVGFLEALKEDAAYDCFIFSDVDLVPMDDRNLYRCGDQPRHFAIA
Sbjct: 181 INQHGEDTFNRAKLLNVGFLEALKEDAAYDCFIFSDVDLVPMDDRNLYRCGDQPRHFAIA 240

Query: 241 MDKFGFRLPYAGYFGGVSGLSKAQFLRINGFPNEYWGWGGEDDDIFNRISLTGMKISRPD 300
           MDKFGFRLPYAGYFGGVSGLSKAQFLRINGFPNEYWGWGGEDDDIFNRISLTGMKISRPD
Sbjct: 241 MDKFGFRLPYAGYFGGVSGLSKAQFLRINGFPNEYWGWGGEDDDIFNRISLTGMKISRPD 300

Query: 301 IRIGRYRMIKHDRDKHNEPNPQRFTKIQNTKLTMKRDGIGSVRYQVLEVSRQPLFTNITV 360
           IRIGRYRMIKHDRDKHNEPNPQRFTKIQNTKLTMKRDGIGSVRYQVLEVSRQPLFTNITV
Sbjct: 301 IRIGRYRMIKHDRDKHNEPNPQRFTKIQNTKLTMKRDGIGSVRYQVLEVSRQPLFTNITV 360

Query: 361 DIGRPPSWPPRG 372
           DIGRPPSWPPRG
Sbjct: 361 DIGRPPSWPPRG 372


>gi|4502347 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 2
           [Homo sapiens]
          Length = 372

 Score =  775 bits (2002), Expect = 0.0
 Identities = 372/372 (100%), Positives = 372/372 (100%)

Query: 1   MSRLLGGTLERVCKAVLLLCLLHFLVAVILYFDVYAQHLAFFSRFSARGPAHALHPAASS 60
           MSRLLGGTLERVCKAVLLLCLLHFLVAVILYFDVYAQHLAFFSRFSARGPAHALHPAASS
Sbjct: 1   MSRLLGGTLERVCKAVLLLCLLHFLVAVILYFDVYAQHLAFFSRFSARGPAHALHPAASS 60

Query: 61  SSSSSNCSRPNATASSSGLPEVPSALPGPTAPTLPPCPDSPPGLVGRLLIEFTSPMPLER 120
           SSSSSNCSRPNATASSSGLPEVPSALPGPTAPTLPPCPDSPPGLVGRLLIEFTSPMPLER
Sbjct: 61  SSSSSNCSRPNATASSSGLPEVPSALPGPTAPTLPPCPDSPPGLVGRLLIEFTSPMPLER 120

Query: 121 VQRENPGVLMGGRYTPPDCTPAQTVAVIIPFRHREHHLRYWLHYLHPILRRQRLRYGVYV 180
           VQRENPGVLMGGRYTPPDCTPAQTVAVIIPFRHREHHLRYWLHYLHPILRRQRLRYGVYV
Sbjct: 121 VQRENPGVLMGGRYTPPDCTPAQTVAVIIPFRHREHHLRYWLHYLHPILRRQRLRYGVYV 180

Query: 181 INQHGEDTFNRAKLLNVGFLEALKEDAAYDCFIFSDVDLVPMDDRNLYRCGDQPRHFAIA 240
           INQHGEDTFNRAKLLNVGFLEALKEDAAYDCFIFSDVDLVPMDDRNLYRCGDQPRHFAIA
Sbjct: 181 INQHGEDTFNRAKLLNVGFLEALKEDAAYDCFIFSDVDLVPMDDRNLYRCGDQPRHFAIA 240

Query: 241 MDKFGFRLPYAGYFGGVSGLSKAQFLRINGFPNEYWGWGGEDDDIFNRISLTGMKISRPD 300
           MDKFGFRLPYAGYFGGVSGLSKAQFLRINGFPNEYWGWGGEDDDIFNRISLTGMKISRPD
Sbjct: 241 MDKFGFRLPYAGYFGGVSGLSKAQFLRINGFPNEYWGWGGEDDDIFNRISLTGMKISRPD 300

Query: 301 IRIGRYRMIKHDRDKHNEPNPQRFTKIQNTKLTMKRDGIGSVRYQVLEVSRQPLFTNITV 360
           IRIGRYRMIKHDRDKHNEPNPQRFTKIQNTKLTMKRDGIGSVRYQVLEVSRQPLFTNITV
Sbjct: 301 IRIGRYRMIKHDRDKHNEPNPQRFTKIQNTKLTMKRDGIGSVRYQVLEVSRQPLFTNITV 360

Query: 361 DIGRPPSWPPRG 372
           DIGRPPSWPPRG
Sbjct: 361 DIGRPPSWPPRG 372


>gi|13929462 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 1,
           membrane-bound form [Homo sapiens]
          Length = 398

 Score =  401 bits (1030), Expect = e-112
 Identities = 206/383 (53%), Positives = 249/383 (65%), Gaps = 24/383 (6%)

Query: 6   GGTLERVCKAVLLLCLLHFLVAVILYFD----VYAQHLAFFSRFSARGPAHALHPAASSS 61
           G +L+R C+ ++ +C LH  V ++ Y           L   S     G   A     SS 
Sbjct: 16  GASLQRACRLLVAVCALHLGVTLVYYLAGRDLSRLPQLVGVSTPLQGGSNSAAAIGQSSG 75

Query: 62  SSSSNCSRPNATASSSGLPE-------VPSALPGP------------TAPTLPPCPDSPP 102
              +  +RP     +S  P        V  + PGP            TA +LP CP+  P
Sbjct: 76  ELRTGGARPPPPLGASSQPRPGGDSSPVVDSGPGPASNLTSVPVPHTTALSLPACPEESP 135

Query: 103 GLVGRLLIEFTSPMPLERVQRENPGVLMGGRYTPPDCTPAQTVAVIIPFRHREHHLRYWL 162
            LVG +LIEF  P+ LE V ++NP V MGGRY P DC     VA+IIPFR+R+ HL+YWL
Sbjct: 136 LLVGPMLIEFNMPVDLELVAKQNPNVKMGGRYAPRDCVSPHKVAIIIPFRNRQEHLKYWL 195

Query: 163 HYLHPILRRQRLRYGVYVINQHGEDTFNRAKLLNVGFLEALKEDAAYDCFIFSDVDLVPM 222
           +YLHP+L+RQ+L YG+YVINQ G+  FNRAKLLNVGF EALK D  Y CF+FSDVDL+PM
Sbjct: 196 YYLHPVLQRQQLDYGIYVINQAGDTIFNRAKLLNVGFQEALK-DYDYTCFVFSDVDLIPM 254

Query: 223 DDRNLYRCGDQPRHFAIAMDKFGFRLPYAGYFGGVSGLSKAQFLRINGFPNEYWGWGGED 282
           +D N YRC  QPRH ++AMDKFGF LPY  YFGGVS LSK QFL INGFPN YWGWGGED
Sbjct: 255 NDHNAYRCFSQPRHISVAMDKFGFSLPYVQYFGGVSALSKQQFLTINGFPNNYWGWGGED 314

Query: 283 DDIFNRISLTGMKISRPDIRIGRYRMIKHDRDKHNEPNPQRFTKIQNTKLTMKRDGIGSV 342
           DDIFNR+   GM ISRP+  +GR RMI+H RDK NEPNPQRF +I +TK TM  DG+ S+
Sbjct: 315 DDIFNRLVFRGMSISRPNAVVGRCRMIRHSRDKKNEPNPQRFDRIAHTKETMLSDGLNSL 374

Query: 343 RYQVLEVSRQPLFTNITVDIGRP 365
            YQVL+V R PL+T ITVDIG P
Sbjct: 375 TYQVLDVQRYPLYTQITVDIGTP 397


>gi|4502349 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 3
           [Homo sapiens]
          Length = 393

 Score =  318 bits (815), Expect = 5e-87
 Identities = 158/295 (53%), Positives = 196/295 (66%), Gaps = 3/295 (1%)

Query: 77  SGLPEVPSALPGPTAPT-LPPCPDSPPGLVGRLLIEFTSPMPLERVQRENPGVLMGGRYT 135
           S L  +P A  GP AP  LP CP+  P LVG + + F+    L  +   NP V  GGRY 
Sbjct: 56  SNLSHLPGAPGGPPAPQGLPYCPERSPLLVGPVSVSFSPVPSLAEIVERNPRVEPGGRYR 115

Query: 136 PPDCTPAQTVAVIIPFRHREHHLRYWLHYLHPILRRQRLRYGVYVINQHGEDTFNRAKLL 195
           P  C P    A+I+P R REHHLR  L++LHP L+RQ+L YG+YVI+Q G  TFNRAKLL
Sbjct: 116 PAGCEPRSRTAIIVPHRAREHHLRLLLYHLHPFLQRQQLAYGIYVIHQAGNGTFNRAKLL 175

Query: 196 NVGFLEALKEDAAYDCFIFSDVDLVPMDDRNLYRCGDQ-PRHFAIAMDKFGFRLPYAGYF 254
           NVG  EAL+ D  +DC    DVDL+P +D NLY C  + PRH A+AM+KFG+ LPY  YF
Sbjct: 176 NVGVREALR-DEEWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYF 234

Query: 255 GGVSGLSKAQFLRINGFPNEYWGWGGEDDDIFNRISLTGMKISRPDIRIGRYRMIKHDRD 314
           GGVS L+  Q+L++NGFPNEYWGWGGEDDDI  R+ L GMKISRP   +G Y+M+KH  D
Sbjct: 235 GGVSALTPDQYLKMNGFPNEYWGWGGEDDDIATRVRLAGMKISRPPTSVGHYKMVKHRGD 294

Query: 315 KHNEPNPQRFTKIQNTKLTMKRDGIGSVRYQVLEVSRQPLFTNITVDIGRPPSWP 369
           K NE NP RF  +  T+ +  +DG+ S+ YQ+L     PL+TNIT DIG  P  P
Sbjct: 295 KGNEENPHRFDLLVRTQNSWTQDGMNSLTYQLLARELGPLYTNITADIGTDPRGP 349


>gi|47078258 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 4
           [Homo sapiens]
          Length = 344

 Score =  282 bits (721), Expect = 4e-76
 Identities = 137/268 (51%), Positives = 178/268 (66%), Gaps = 2/268 (0%)

Query: 94  LPPCPDSPPGLVGRLLIEFTSPMPLERVQRENPGVLMGGRYTPPDCTPAQTVAVIIPFRH 153
           L  CP   P L G+  + F   + LE VQ ENP V  G RY P +C   Q VA+++P R+
Sbjct: 74  LDNCPSVSPYLRGQSKLIFKPDLTLEEVQAENPKVSRG-RYRPQECKALQRVAILVPHRN 132

Query: 154 REHHLRYWLHYLHPILRRQRLRYGVYVINQHGEDTFNRAKLLNVGFLEALKEDAAYDCFI 213
           RE HL Y L +LHP L+RQ+L YG+YVI+Q     FNRAKLLNVG+LEALKE+  +DCFI
Sbjct: 133 REKHLMYLLEHLHPFLQRQQLDYGIYVIHQAEGKKFNRAKLLNVGYLEALKEEN-WDCFI 191

Query: 214 FSDVDLVPMDDRNLYRCGDQPRHFAIAMDKFGFRLPYAGYFGGVSGLSKAQFLRINGFPN 273
           F DVDLVP +D NLY+C + P+H  +  +  G+RL Y+GYFGGV+ LS+ QF ++NGF N
Sbjct: 192 FHDVDLVPENDFNLYKCEEHPKHLVVGRNSTGYRLRYSGYFGGVTALSREQFFKVNGFSN 251

Query: 274 EYWGWGGEDDDIFNRISLTGMKISRPDIRIGRYRMIKHDRDKHNEPNPQRFTKIQNTKLT 333
            YWGWGGEDDD+  R+ L  MKISRP   +G+Y M+ H RDK NE N +R   +      
Sbjct: 252 NYWGWGGEDDDLRLRVELQRMKISRPLPEVGKYTMVFHTRDKGNEVNAERMKLLHQVSRV 311

Query: 334 MKRDGIGSVRYQVLEVSRQPLFTNITVD 361
            + DG+ S  Y+++ V   PL+ NITVD
Sbjct: 312 WRTDGLSSCSYKLVSVEHNPLYINITVD 339


>gi|9994175 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 4
           [Homo sapiens]
          Length = 344

 Score =  282 bits (721), Expect = 4e-76
 Identities = 137/268 (51%), Positives = 178/268 (66%), Gaps = 2/268 (0%)

Query: 94  LPPCPDSPPGLVGRLLIEFTSPMPLERVQRENPGVLMGGRYTPPDCTPAQTVAVIIPFRH 153
           L  CP   P L G+  + F   + LE VQ ENP V  G RY P +C   Q VA+++P R+
Sbjct: 74  LDNCPSVSPYLRGQSKLIFKPDLTLEEVQAENPKVSRG-RYRPQECKALQRVAILVPHRN 132

Query: 154 REHHLRYWLHYLHPILRRQRLRYGVYVINQHGEDTFNRAKLLNVGFLEALKEDAAYDCFI 213
           RE HL Y L +LHP L+RQ+L YG+YVI+Q     FNRAKLLNVG+LEALKE+  +DCFI
Sbjct: 133 REKHLMYLLEHLHPFLQRQQLDYGIYVIHQAEGKKFNRAKLLNVGYLEALKEEN-WDCFI 191

Query: 214 FSDVDLVPMDDRNLYRCGDQPRHFAIAMDKFGFRLPYAGYFGGVSGLSKAQFLRINGFPN 273
           F DVDLVP +D NLY+C + P+H  +  +  G+RL Y+GYFGGV+ LS+ QF ++NGF N
Sbjct: 192 FHDVDLVPENDFNLYKCEEHPKHLVVGRNSTGYRLRYSGYFGGVTALSREQFFKVNGFSN 251

Query: 274 EYWGWGGEDDDIFNRISLTGMKISRPDIRIGRYRMIKHDRDKHNEPNPQRFTKIQNTKLT 333
            YWGWGGEDDD+  R+ L  MKISRP   +G+Y M+ H RDK NE N +R   +      
Sbjct: 252 NYWGWGGEDDDLRLRVELQRMKISRPLPEVGKYTMVFHTRDKGNEVNAERMKLLHQVSRV 311

Query: 334 MKRDGIGSVRYQVLEVSRQPLFTNITVD 361
            + DG+ S  Y+++ V   PL+ NITVD
Sbjct: 312 WRTDGLSSCSYKLVSVEHNPLYINITVD 339


>gi|190570165 beta-1,4-galactosyltransferase 6 [Homo sapiens]
          Length = 382

 Score =  230 bits (586), Expect = 2e-60
 Identities = 138/370 (37%), Positives = 205/370 (55%), Gaps = 24/370 (6%)

Query: 11  RVCKAVLLLCLLHF-LVAVILYFDVYAQHLA--FFSRFSARGP---------AHALHPAA 58
           RV    LL  +  F L +  LYF   A  +A  +     ARG           H +    
Sbjct: 9   RVSNRSLLAFIFFFSLSSSCLYFIYVAPGIANTYLFMVQARGIMLRENVKTIGHMIRLYT 68

Query: 59  SSSSSSSNCSRPNATASSSGLPEVPSALPGP-TAPTLPPCPDSPPGLVGRLLIEFTSPM- 116
           + +S+ +    P    SS  L +  + LP   T     PCP+  P + G L +  +    
Sbjct: 69  NKNSTLNGTDYPEGNNSSDYLVQTTTYLPENFTYSPYLPCPEKLPYMRGFLNVNVSEVSF 128

Query: 117 -PLERVQRENPGVLMGGRYTPPDCTPAQTVAVIIPFRHREHHLRYWLHYLHPILRRQRLR 175
             + ++  ++  +  GG + P DC P   VAV+IPFR+R  HL  +  +L P+L++QRL 
Sbjct: 129 DEIHQLFSKDLDIEPGGHWRPKDCKPRWKVAVLIPFRNRHEHLPIFFLHLIPMLQKQRLE 188

Query: 176 YGVYVINQHGEDTFNRAKLLNVGFLEALKEDAAYDCFIFSDVDLVPMDDRNLYRCGDQPR 235
           +  YVI Q G   FNRA L NVGF EA+K D+ +DC IF DVD +P +DRN Y CG+ PR
Sbjct: 189 FAFYVIEQTGTQPFNRAMLFNVGFKEAMK-DSVWDCVIFHDVDHLPENDRNYYGCGEMPR 247

Query: 236 HFAIAMDKFGFRLPYAGYFGGVSGLSKAQFLRINGFPNEYWGWGGEDDDIFNRISLTGMK 295
           HFA  +DK+ + LPY  +FGGVSGL+  QF +INGFPN +WGWGGEDDD++NR+   G  
Sbjct: 248 HFAAKLDKYMYILPYKEFFGGVSGLTVEQFRKINGFPNAFWGWGGEDDDLWNRVHYAGYN 307

Query: 296 ISRPDIRIGRYRMIKHDRDKHNEPNPQ---RFTKIQNTKLTMKRDGIGSVRYQVLEVSRQ 352
           ++RP+  +G+Y+ I H    H+    Q   R+  ++ +K     DG+ ++ Y+  ++   
Sbjct: 308 VTRPEGDLGKYKSIPH----HHRGEVQFLGRYKLLRYSKERQYIDGLNNLIYRP-KILVD 362

Query: 353 PLFTNITVDI 362
            L+TNI+V++
Sbjct: 363 RLYTNISVNL 372


>gi|4757828 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 5
           [Homo sapiens]
          Length = 388

 Score =  230 bits (586), Expect = 2e-60
 Identities = 116/272 (42%), Positives = 167/272 (61%), Gaps = 13/272 (4%)

Query: 97  CPDSPPGLVGRLLIEFTSPMPLERVQR---ENPGVLMGGRYTPPDCTPAQTVAVIIPFRH 153
           CP+  P + G + I   S + ++ +     ++P + +GG + P DC P   VA++IPFR+
Sbjct: 114 CPERLPSMKGPIDINM-SEIGMDYIHELFSKDPTIKLGGHWKPSDCMPRWKVAILIPFRN 172

Query: 154 REHHLRYWLHYLHPILRRQRLRYGVYVINQHGEDTFNRAKLLNVGFLEALKEDAAYDCFI 213
           R  HL     +L P+L+RQRL++  YV+ Q G   FNRA L NVGF EA+K D  +DC I
Sbjct: 173 RHEHLPVLFRHLLPMLQRQRLQFAFYVVEQVGTQPFNRAMLFNVGFQEAMK-DLDWDCLI 231

Query: 214 FSDVDLVPMDDRNLYRCGDQPRHFAIAMDKFGFRLPYAGYFGGVSGLSKAQFLRINGFPN 273
           F DVD +P  DRN Y CG  PRHFA  +DK+ + LPY  +FGGVSGL+  QF +INGFPN
Sbjct: 232 FHDVDHIPESDRNYYGCGQMPRHFATKLDKYMYLLPYTEFFGGVSGLTVEQFRKINGFPN 291

Query: 274 EYWGWGGEDDDIFNRISLTGMKISRPDIRIGRYRMIKHDRDKHNEPNPQ---RFTKIQNT 330
            +WGWGGEDDD++NR+   G  +SRP+   G+Y+ I H    H+    Q   R+  ++ +
Sbjct: 292 AFWGWGGEDDDLWNRVQNAGYSVSRPEGDTGKYKSIPH----HHRGEVQFLGRYALLRKS 347

Query: 331 KLTMKRDGIGSVRYQVLEVSRQPLFTNITVDI 362
           K     DG+ ++ Y    ++   L+ NITV++
Sbjct: 348 KERQGLDGLNNLNY-FANITYDALYKNITVNL 378


>gi|6005952 xylosylprotein beta 1,4-galactosyltransferase 7 [Homo
           sapiens]
          Length = 327

 Score =  109 bits (273), Expect = 3e-24
 Identities = 65/204 (31%), Positives = 107/204 (52%), Gaps = 6/204 (2%)

Query: 145 VAVIIPFRHREHHLRYWLHYLHPILRRQRLRYGVYVINQHGEDTFNRAKLLNVGFLEALK 204
           +AV++PFR R   L  ++ ++   L R+++R+ +YV+NQ     FNRA L+NVGFLE+  
Sbjct: 95  LAVLVPFRERFEELLVFVPHMRRFLSRKKIRHHIYVLNQVDHFRFNRAALINVGFLESSN 154

Query: 205 EDAAYDCFIFSDVDLVPMDDRNLYRCGDQPRHFAIAMDKFGFRLPYAGYFGGVSGLSKAQ 264
                D     DVDL+P+++   Y    +   F +A  +      Y  Y GG+  LSK  
Sbjct: 155 ST---DYIAMHDVDLLPLNEELDYGF-PEAGPFHVASPELHPLYHYKTYVGGILLLSKQH 210

Query: 265 FLRINGFPNEYWGWGGEDDDIFNRISLTGMKISRPDIRIGRYRMIKHDRD-KHNEPNPQR 323
           +   NG  N +WGWG EDD+ + RI   G+++ RP      Y+  +H  D    + + +R
Sbjct: 211 YRLCNGMSNRFWGWGREDDEFYRRIKGAGLQLFRPSGITTGYKTFRHLHDPAWRKRDQKR 270

Query: 324 FTKIQNTKLTMKRD-GIGSVRYQV 346
               +  +  + R+ G+ +V+Y V
Sbjct: 271 IAAQKQEQFKVDREGGLNTVKYHV 294


>gi|31542309 chondroitin sulfate synthase 1 [Homo sapiens]
          Length = 802

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 34/158 (21%)

Query: 168 ILRRQRLRY---GVYVINQHGEDTFNRAKLLNVGFLEALKEDAAYDCFIFSDVDLVPMDD 224
           ++R  R++Y    + ++   GE  F+RA  L VG  +   E   + C    DVDLV    
Sbjct: 586 LMRDYRIKYPKADMQILPVSGE--FSRALALEVGSSQFNNESLLFFC----DVDLV-FTT 638

Query: 225 RNLYRCG-----DQPRHFAIAMDKFGFRLPYAG-------------------YFGGVSGL 260
             L RC       Q  +F I   ++  ++ Y+G                   Y  G++ +
Sbjct: 639 EFLQRCRANTVLGQQIYFPIIFSQYDPKIVYSGKVPSDNHFAFTQKTGFWRNYGFGITCI 698

Query: 261 SKAQFLRINGFPNEYWGWGGEDDDIFNRISLTGMKISR 298
            K   +R+ GF     GWG ED D+FN++   G+K  R
Sbjct: 699 YKGDLVRVGGFDVSIQGWGLEDVDLFNKVVQAGLKTFR 736


>gi|74271903 chondroitin sulfate synthase 3 [Homo sapiens]
          Length = 882

 Score = 39.7 bits (91), Expect = 0.004
 Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 25/107 (23%)

Query: 213 IFSDVDLVPMDDRNLYRCGD-----QPRHFAIAMDKFGFRLPYAG--------------- 252
           +F DVDL+  +D  L RC D     Q  ++ I   ++  ++   G               
Sbjct: 715 LFCDVDLIFREDF-LQRCRDNTIQGQQVYYPIIFSQYDPKVTNGGNPPTDDYFIFSKKTG 773

Query: 253 ----YFGGVSGLSKAQFLRINGFPNEYWGWGGEDDDIFNRISLTGMK 295
               Y  G++ + K+  L   GF     GWG ED D++N++ L+G++
Sbjct: 774 FWRDYGYGITCIYKSDLLGAGGFDTSIQGWGLEDVDLYNKVILSGLR 820


>gi|223278403 glutamate receptor, ionotropic, delta 2 (Grid2)
           interacting protein [Homo sapiens]
          Length = 1211

 Score = 39.3 bits (90), Expect = 0.006
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 50  PAHALHPAASS--SSSSSNCSRPNATASSSGLPEVPSALPGPTAPTLPPCPDSPPGLVGR 107
           P+   HP  S   +S SS+ S P A+  SS  P  P   PGP  P  PP PD       R
Sbjct: 607 PSPCYHPLCSGGLASPSSSESHPYASLDSSRAPS-PQPGPGPICPDSPPSPDPTRPPSRR 665

Query: 108 LLIEFTSPM 116
            L  F+ P+
Sbjct: 666 KLFTFSHPV 674



 Score = 32.3 bits (72), Expect = 0.70
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 5/71 (7%)

Query: 58  ASSSSSSSNCSRPNATASSSGLPEVPSALPGPTAPTL-PPCPDSPPGL---VGRLLIEFT 113
           A  SS SS+ SR  A A +  L ++   +P P  P L PP P +PP L   +G    E T
Sbjct: 767 AKPSSRSSDGSRGPAQALAKPLTQLSHPVPPPPPPPLPPPVPCAPPMLSRGLGHRRSE-T 825

Query: 114 SPMPLERVQRE 124
           S M ++R++ E
Sbjct: 826 SHMSVKRLRWE 836


>gi|6912372 forkhead box D3 [Homo sapiens]
          Length = 478

 Score = 38.1 bits (87), Expect = 0.013
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 4/69 (5%)

Query: 49  GPAHALHPAASSSSSSSNCSRPNATASSSGLPEVPSALPGPTAPTLPPC-PDSPPGLVGR 107
           G  + LHPAA++ + S   +   A A+++   + P ALP P AP LPP  P  P G +GR
Sbjct: 272 GRPYGLHPAAAAGAYSHPAAA--AAAAAAAALQYPYALP-PVAPVLPPAVPLLPSGELGR 328

Query: 108 LLIEFTSPM 116
               F S +
Sbjct: 329 KAAAFGSQL 337


>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2752

 Score = 37.7 bits (86), Expect = 0.017
 Identities = 22/60 (36%), Positives = 32/60 (53%)

Query: 43   SRFSARGPAHALHPAASSSSSSSNCSRPNATASSSGLPEVPSALPGPTAPTLPPCPDSPP 102
            S  S+   + +   ++SSSSSSS+ S  ++++SSS       A PGP A   P  P  PP
Sbjct: 2610 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPP 2669



 Score = 30.0 bits (66), Expect = 3.5
 Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 17/101 (16%)

Query: 43   SRFSARGPAHALHPAASSSSSSSNCSRPNATASSSGLPEVPSALPGPTAPTLPPCPDSPP 102
            S  +A  PA     ++SSSSSSS+ S  ++++SSS      S+       +LP  P+   
Sbjct: 2519 SALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSS--SSGSSSSDSEGSSLPVQPE--- 2573

Query: 103  GLVGRLLIEFTSPMPLERVQRENPGVLMGGRYTPPDCTPAQ 143
              V    +   +P P E V+         GR  PP+ TPA+
Sbjct: 2574 --VALKRVPSPTPAPKEAVRE--------GR--PPEPTPAK 2602


>gi|239754138 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 274

 Score = 36.6 bits (83), Expect = 0.037
 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 8/67 (11%)

Query: 50  PAHALHPAASSSSSSSNC-------SRPNATASSSGLP-EVPSALPGPTAPTLPPCPDSP 101
           P+  +HPA S+   S  C       SR  + +S   LP + P ALPG   P  PP P +P
Sbjct: 21  PSSLIHPARSNQPPSRTCPPLPGPPSRSRSPSSRLKLPADPPRALPGSPEPPPPPPPAAP 80

Query: 102 PGLVGRL 108
             L  R+
Sbjct: 81  HVLGARV 87


>gi|239742631 PREDICTED: hypothetical protein XP_002342600 [Homo
           sapiens]
          Length = 274

 Score = 36.6 bits (83), Expect = 0.037
 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 8/67 (11%)

Query: 50  PAHALHPAASSSSSSSNC-------SRPNATASSSGLP-EVPSALPGPTAPTLPPCPDSP 101
           P+  +HPA S+   S  C       SR  + +S   LP + P ALPG   P  PP P +P
Sbjct: 21  PSSLIHPARSNQPPSRTCPPLPGPPSRSRSPSSRLKLPADPPRALPGSPEPPPPPPPAAP 80

Query: 102 PGLVGRL 108
             L  R+
Sbjct: 81  HVLGARV 87


>gi|61743948 abl-interactor 1 isoform d [Homo sapiens]
          Length = 476

 Score = 36.2 bits (82), Expect = 0.049
 Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 56  PAASSSSSSSNCSRPNATASSSGLPEVPSALPGPTAPTL-PPCPDSPPG 103
           P   S SS  + SR N+ +SS G   +P A+P P+ PT+ P  P S PG
Sbjct: 231 PRTHSGSSGGSGSRENSGSSSIG---IPIAVPTPSPPTIGPAAPGSAPG 276


>gi|61743946 abl-interactor 1 isoform c [Homo sapiens]
          Length = 452

 Score = 36.2 bits (82), Expect = 0.049
 Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 56  PAASSSSSSSNCSRPNATASSSGLPEVPSALPGPTAPTL-PPCPDSPPG 103
           P   S SS  + SR N+ +SS G   +P A+P P+ PT+ P  P S PG
Sbjct: 236 PRTHSGSSGGSGSRENSGSSSIG---IPIAVPTPSPPTIGPAAPGSAPG 281


>gi|61743944 abl-interactor 1 isoform b [Homo sapiens]
          Length = 481

 Score = 36.2 bits (82), Expect = 0.049
 Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 56  PAASSSSSSSNCSRPNATASSSGLPEVPSALPGPTAPTL-PPCPDSPPG 103
           P   S SS  + SR N+ +SS G   +P A+P P+ PT+ P  P S PG
Sbjct: 236 PRTHSGSSGGSGSRENSGSSSIG---IPIAVPTPSPPTIGPAAPGSAPG 281


>gi|154146199 sal-like 3 [Homo sapiens]
          Length = 1300

 Score = 35.8 bits (81), Expect = 0.064
 Identities = 36/111 (32%), Positives = 46/111 (41%), Gaps = 9/111 (8%)

Query: 46  SARGPAHALH---PAASSSSSSSN-CSRPNATASSSGLPEVPSALPGPTAPTLPPCPDSP 101
           SA  PA A+    PAA ++   +   SRP + AS+ G P  PSA   P AP+  P P +P
Sbjct: 267 SAGAPAAAIAGSGPAAPAAFEGAQPLSRPESGASTPGGPAEPSA---PAAPSAAPAPAAP 323

Query: 102 PGLVGRLLIEFTSPMPLERVQRENPGVLMGGRYTPPDCTPAQTVA--VIIP 150
                      + P          PG L+G     P     QT A  VI P
Sbjct: 324 APAPAPQSAASSQPQSASTPPALAPGSLLGAAPGLPSPLLPQTSASGVIFP 374


>gi|163965366 nascent polypeptide-associated complex alpha subunit
            isoform a [Homo sapiens]
          Length = 2078

 Score = 35.8 bits (81), Expect = 0.064
 Identities = 33/105 (31%), Positives = 37/105 (35%), Gaps = 19/105 (18%)

Query: 56   PAASSSSSSSNCSRPNATASSSGLPEVPSALPGPTAPT-----------LPPCP------ 98
            PA +  S     + P  T SS G P  PS+  GPT P             PP P      
Sbjct: 1336 PAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPAI 1395

Query: 99   DSPPGLVGRLLIEFTSP--MPLERVQRENPGVLMGGRYTPPDCTP 141
             SP G      +   SP   P   V RE       G  TPP  TP
Sbjct: 1396 PSPKGDPTSPAVIPLSPKKAPATPVTREGAATPSKGDLTPPAVTP 1440



 Score = 33.1 bits (74), Expect = 0.41
 Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 50  PAHALHPAASSSSSSSNCSRPNATASSSGLPEVPSALPGPTAP-TLPPCPDSPP 102
           PA    PA S +SSS   +R  AT +  G+P  PS    PT P   PP P   P
Sbjct: 903 PAPKQAPALSMTSSSPKKAR--ATPAPKGIPASPSPKGAPTPPAATPPSPKGGP 954



 Score = 29.6 bits (65), Expect = 4.6
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 72   ATASSSGLPEVPSALPGPTAPTL-PPCPDSPP 102
            AT++  G P  PS+   PT P + PP P  PP
Sbjct: 1448 ATSAPKGGPATPSSKGDPTLPAVTPPSPKEPP 1479


>gi|40789265 beta 1,4-N-acetylgalactosaminyltransferase-transferase 4
            [Homo sapiens]
          Length = 1039

 Score = 35.4 bits (80), Expect = 0.083
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 11/75 (14%)

Query: 230  CGDQPRHFAIAMDKFGFRLPYAGYFGGVSGLSKAQFLRINGFPNEYWG--WGGEDDDIFN 287
            CG  PR      +  GF         G+ G+ K+ F R+ G   E +   WGGED ++ +
Sbjct: 948  CGSSPRDPHGYWEVNGF---------GLFGIYKSDFDRVGGMNTEEFRDQWGGEDWELLD 998

Query: 288  RISLTGMKISRPDIR 302
            R+   G+++ R  +R
Sbjct: 999  RVLQAGLEVERLRLR 1013


>gi|11067749 bromodomain containing protein 3 [Homo sapiens]
          Length = 726

 Score = 35.4 bits (80), Expect = 0.083
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 37  QHLAFFSRFSARGPAHALHPAASSSSSSSNCSRPNATASSSGLPEVPSALPGPTA-PTLP 95
           Q +A  S  S   P  ++ P  S +   +    P  TA+ + +P  P+A P P A P +P
Sbjct: 169 QQVAAVSSVSPATPFQSVPPTVSQTPVIAATPVPTITANVTSVPVPPAAAPPPPATPIVP 228

Query: 96  PCPDSPP 102
             P +PP
Sbjct: 229 VVPPTPP 235


>gi|78042577 MAP7 domain containing 1 [Homo sapiens]
          Length = 841

 Score = 35.4 bits (80), Expect = 0.083
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 10/75 (13%)

Query: 50  PAHALHPAASSSSSSSNCSRPNATASSSGLPEVPSALPGPTAPTLPPCPDSPPGLVGRLL 109
           P   L  + +S  S  + +RP++ ++S   P  P   PGP   TLPP P SP G      
Sbjct: 447 PRARLSASTASELSPKSKARPSSPSTSWHRPASPCPSPGP-GHTLPPKPPSPRG------ 499

Query: 110 IEFTSPMPLERVQRE 124
              T+  P  RV+R+
Sbjct: 500 ---TTASPKGRVRRK 511



 Score = 30.4 bits (67), Expect = 2.7
 Identities = 16/60 (26%), Positives = 22/60 (36%)

Query: 56  PAASSSSSSSNCSRPNATASSSGLPEVPSALPGPTAPTLPPCPDSPPGLVGRLLIEFTSP 115
           P+A+     S   R  +    S  P  P+  P P+    PP  + PP          TSP
Sbjct: 518 PSAAGPEDKSQSKRRASNEKESAAPASPAPSPAPSPTPAPPQKEQPPAETPTDAAVLTSP 577


>gi|9966803 poly(rC) binding protein 4 isoform a [Homo sapiens]
          Length = 424

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 7/63 (11%)

Query: 72  ATASSSGLPE-VPSALPGPTAPTLPPCPDSPPGLVGR----LLIEF--TSPMPLERVQRE 124
           A ++S G P   P+ LP P +P L   P +PPGL+G      L  F    PMP   +   
Sbjct: 333 AKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGTPYAISLSNFIGLKPMPFLALPPA 392

Query: 125 NPG 127
           +PG
Sbjct: 393 SPG 395


>gi|14670373 poly(rC) binding protein 4 isoform c [Homo sapiens]
          Length = 403

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 7/63 (11%)

Query: 72  ATASSSGLPE-VPSALPGPTAPTLPPCPDSPPGLVGR----LLIEF--TSPMPLERVQRE 124
           A ++S G P   P+ LP P +P L   P +PPGL+G      L  F    PMP   +   
Sbjct: 312 AKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGTPYAISLSNFIGLKPMPFLALPPA 371

Query: 125 NPG 127
           +PG
Sbjct: 372 SPG 374


>gi|14670369 poly(rC) binding protein 4 isoform c [Homo sapiens]
          Length = 403

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 7/63 (11%)

Query: 72  ATASSSGLPE-VPSALPGPTAPTLPPCPDSPPGLVGR----LLIEF--TSPMPLERVQRE 124
           A ++S G P   P+ LP P +P L   P +PPGL+G      L  F    PMP   +   
Sbjct: 312 AKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGTPYAISLSNFIGLKPMPFLALPPA 371

Query: 125 NPG 127
           +PG
Sbjct: 372 SPG 374


>gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor
           [Homo sapiens]
          Length = 1336

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 1/79 (1%)

Query: 25  LVAVILYFDVYA-QHLAFFSRFSARGPAHALHPAASSSSSSSNCSRPNATASSSGLPEVP 83
           LVA+ L   V+A +HL ++      GP H +    + S    +C    A    +  P  P
Sbjct: 853 LVAMGLSLLVFAWEHLVYWRLRHCLGPTHRMDFLLAFSRGMYSCCSAEAAPPPAKPPPPP 912

Query: 84  SALPGPTAPTLPPCPDSPP 102
             LP P  P   P P   P
Sbjct: 913 QPLPSPAYPAPRPAPGPAP 931


>gi|55750053 atrophin-1 [Homo sapiens]
          Length = 1190

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 22/112 (19%)

Query: 57  AASSSSSSSNCSRPNATASSSGLPEVPSALPGPTAPTLPPCPDSPPGLVGRLLIEFTSP- 115
           AA+SSSSSS+ S  +   +S  LP  P + P PT+ ++    + PP        ++T P 
Sbjct: 383 AAASSSSSSSSSSASPFPASQALPSYPHSFPPPTSLSV---SNQPP--------KYTQPS 431

Query: 116 MPLERVQRENP-------GVLMGGRYTP---PDCTPAQTVAVIIPFRHREHH 157
           +P + V  + P        +L      P   P  T AQ+ A      H  HH
Sbjct: 432 LPSQAVWSQGPPPPPPYGRLLANSNAHPGPFPPSTGAQSTAHPPVSTHHHHH 483


>gi|55750041 atrophin-1 [Homo sapiens]
          Length = 1190

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 22/112 (19%)

Query: 57  AASSSSSSSNCSRPNATASSSGLPEVPSALPGPTAPTLPPCPDSPPGLVGRLLIEFTSP- 115
           AA+SSSSSS+ S  +   +S  LP  P + P PT+ ++    + PP        ++T P 
Sbjct: 383 AAASSSSSSSSSSASPFPASQALPSYPHSFPPPTSLSV---SNQPP--------KYTQPS 431

Query: 116 MPLERVQRENP-------GVLMGGRYTP---PDCTPAQTVAVIIPFRHREHH 157
           +P + V  + P        +L      P   P  T AQ+ A      H  HH
Sbjct: 432 LPSQAVWSQGPPPPPPYGRLLANSNAHPGPFPPSTGAQSTAHPPVSTHHHHH 483


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.141    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,409,058
Number of Sequences: 37866
Number of extensions: 873281
Number of successful extensions: 8493
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 222
Number of HSP's that attempted gapping in prelim test: 7033
Number of HSP's gapped (non-prelim): 1451
length of query: 372
length of database: 18,247,518
effective HSP length: 104
effective length of query: 268
effective length of database: 14,309,454
effective search space: 3834933672
effective search space used: 3834933672
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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