Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: AMELY Sequence: fasta or formatted (192aa) NCBI GI: 4502073
Description:

amelogenin, Y-linked precursor

Referenced in:

Bone and Related Tissues
Gene Families
Y-linked Genes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7          9           2
 C cysteine            0.5          1           1
 D aspartate           1.6          3           1
 E glutamate           2.6          5           2
 F phenylalanine       2.6          5           1
 G glycine             4.2          8           2
 H histidine           6.8         13           3
 I isoleucine          3.6          7           2
 K lysine              1.6          3           1
 L leucine             9.9         19           2
 M methionine          4.7          9           1
 N asparagine          1.0          2           1
 P proline            21.9         42           2
 Q glutamine          13.5         26           2
 R arginine            2.1          4           1
 S serine              3.6          7           2
 T threonine           4.2          8           1
 V valine              5.7         11           2
 W tryptophan          2.1          4           1
 Y tyrosine            3.1          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   amelogenin, Y-linked precursor 
AMELX                 0.882   amelogenin (X chromosome) isoform 1 precursor 
AMELX                 0.859   amelogenin (X chromosome) isoform 3 precursor 
AMELX                 0.761   amelogenin (X chromosome) isoform 2 precursor 
RBM33                 0.095   RNA binding motif protein 33 
WNK2                  0.088   WNK lysine deficient protein kinase 2 
ADAM29                0.085   ADAM metallopeptidase domain 29 preproprotein [Homo...
ADAM29                0.085   ADAM metallopeptidase domain 29 preproprotein [Homo...
ADAM29                0.085   ADAM metallopeptidase domain 29 preproprotein [Homo...
ADAM29                0.085   ADAM metallopeptidase domain 29 preproprotein 
GNAS                  0.085   GNAS complex locus alex 
ESX1                  0.080   extraembryonic, spermatogenesis, homeobox 1-like [Ho...
EP300                 0.070   E1A binding protein p300 
SYNJ1                 0.068   synaptojanin 1 isoform c 
SYNJ1                 0.068   synaptojanin 1 isoform a 
SYNJ1                 0.068   synaptojanin 1 isoform b 
SYNJ1                 0.068   synaptojanin 1 isoform d 
ARID1A                0.065   AT rich interactive domain 1A isoform a 
ARID1A                0.065   AT rich interactive domain 1A isoform b 
MEF2D                 0.065   myocyte enhancer factor 2D 
HTT                   0.063   huntingtin 
PTPN23                0.063   protein tyrosine phosphatase, non-receptor type 23 [...
BRD4                  0.060   bromodomain-containing protein 4 isoform long 
LOC100291797          0.060   PREDICTED: hypothetical protein XP_002345651 
LOC100291443          0.060   PREDICTED: hypothetical protein XP_002346504 
LOC100289394          0.060   PREDICTED: hypothetical protein XP_002342316 
MED15                 0.058   mediator complex subunit 15 isoform a 
MED15                 0.058   mediator complex subunit 15 isoform b 
RBM12                 0.058   RNA binding motif protein 12 
RBM12                 0.058   RNA binding motif protein 12 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press