Guide to the Human Genome
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Name: AMELX Sequence: fasta or formatted (191aa) NCBI GI: 4502071
Description:

amelogenin (X chromosome) isoform 1 precursor

Referenced in:

Bone and Related Tissues
Gene Families

Other entries for this name:
alt prot [205aa] amelogenin (X chromosome) isoform 3 precursor
alt prot [175aa] amelogenin (X chromosome) isoform 2 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.7          7           2
 C cysteine            0.5          1           1
 D aspartate           1.6          3           1
 E glutamate           2.6          5           2
 F phenylalanine       2.1          4           1
 G glycine             4.2          8           2
 H histidine           7.3         14           3
 I isoleucine          4.2          8           2
 K lysine              1.6          3           1
 L leucine             8.4         16           2
 M methionine          5.8         11           2
 N asparagine          1.0          2           1
 P proline            25.7         49           3
 Q glutamine          12.6         24           2
 R arginine            1.0          2           1
 S serine              3.1          6           1
 T threonine           4.2          8           1
 V valine              4.7          9           2
 W tryptophan          2.1          4           1
 Y tyrosine            3.7          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   amelogenin (X chromosome) isoform 1 precursor 
AMELX                 0.975   amelogenin (X chromosome) isoform 3 precursor 
AMELX                 0.879   amelogenin (X chromosome) isoform 2 precursor 
AMELY                 0.865   amelogenin, Y-linked precursor 
RBM33                 0.133   RNA binding motif protein 33 
ESX1                  0.121   extraembryonic, spermatogenesis, homeobox 1-like [Ho...
GNAS                  0.091   GNAS complex locus alex 
WNK2                  0.086   WNK lysine deficient protein kinase 2 
EP300                 0.086   E1A binding protein p300 
RBM12                 0.084   RNA binding motif protein 12 
RBM12                 0.084   RNA binding motif protein 12 
SF3A2                 0.084   splicing factor 3a, subunit 2 
ADAM29                0.084   ADAM metallopeptidase domain 29 preproprotein [Homo...
ADAM29                0.084   ADAM metallopeptidase domain 29 preproprotein [Homo...
ADAM29                0.084   ADAM metallopeptidase domain 29 preproprotein [Homo...
ADAM29                0.084   ADAM metallopeptidase domain 29 preproprotein 
PRR12                 0.084   proline rich 12 
BRD4                  0.079   bromodomain-containing protein 4 isoform long 
SFPQ                  0.079   splicing factor proline/glutamine rich (polypyrimidin...
ZNF462                0.074   zinc finger protein 462 
ARID1A                0.074   AT rich interactive domain 1A isoform a 
ARID1A                0.074   AT rich interactive domain 1A isoform b 
RERE                  0.071   atrophin-1 like protein isoform b 
RERE                  0.071   atrophin-1 like protein isoform a 
RERE                  0.071   atrophin-1 like protein isoform a 
YLPM1                 0.071   YLP motif containing 1 
CCNK                  0.071   cyclin K isoform 1 
MEF2D                 0.069   myocyte enhancer factor 2D 
IQSEC2                0.069   IQ motif and Sec7 domain 2 isoform1 
SETD1B                0.067   SET domain containing 1B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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