Guide to the Human Genome
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Name: AMELX Sequence: fasta or formatted (205aa) NCBI GI: 33356556
Description:

amelogenin (X chromosome) isoform 3 precursor

Referenced in:

Bone and Related Tissues

Other entries for this name:
alt prot [175aa] amelogenin (X chromosome) isoform 2 precursor
alt prot [191aa] amelogenin (X chromosome) isoform 1 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4          9           2
 C cysteine            0.5          1           1
 D aspartate           2.0          4           1
 E glutamate           2.4          5           2
 F phenylalanine       2.0          4           1
 G glycine             3.9          8           2
 H histidine           7.3         15           3
 I isoleucine          4.4          9           2
 K lysine              1.5          3           1
 L leucine             8.3         17           2
 M methionine          5.4         11           2
 N asparagine          2.0          4           1
 P proline            23.9         49           3
 Q glutamine          12.2         25           2
 R arginine            1.5          3           1
 S serine              3.9          8           1
 T threonine           4.4          9           1
 V valine              4.9         10           2
 W tryptophan          2.0          4           1
 Y tyrosine            3.4          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   amelogenin (X chromosome) isoform 3 precursor 
AMELX                 0.917   amelogenin (X chromosome) isoform 1 precursor 
AMELX                 0.815   amelogenin (X chromosome) isoform 2 precursor 
AMELY                 0.792   amelogenin, Y-linked precursor 
RBM33                 0.111   RNA binding motif protein 33 
ESX1                  0.111   extraembryonic, spermatogenesis, homeobox 1-like [Ho...
GNAS                  0.086   GNAS complex locus alex 
WNK2                  0.081   WNK lysine deficient protein kinase 2 
EP300                 0.081   E1A binding protein p300 
RBM12                 0.079   RNA binding motif protein 12 
RBM12                 0.079   RNA binding motif protein 12 
ADAM29                0.079   ADAM metallopeptidase domain 29 preproprotein [Homo...
ADAM29                0.079   ADAM metallopeptidase domain 29 preproprotein [Homo...
ADAM29                0.079   ADAM metallopeptidase domain 29 preproprotein [Homo...
ADAM29                0.079   ADAM metallopeptidase domain 29 preproprotein 
PRR12                 0.079   proline rich 12 
SF3A2                 0.076   splicing factor 3a, subunit 2 
BRD4                  0.076   bromodomain-containing protein 4 isoform long 
SFPQ                  0.074   splicing factor proline/glutamine rich (polypyrimidin...
ZNF462                0.069   zinc finger protein 462 
ARID1A                0.069   AT rich interactive domain 1A isoform a 
ARID1A                0.069   AT rich interactive domain 1A isoform b 
RERE                  0.067   atrophin-1 like protein isoform b 
RERE                  0.067   atrophin-1 like protein isoform a 
RERE                  0.067   atrophin-1 like protein isoform a 
YLPM1                 0.067   YLP motif containing 1 
CCNK                  0.065   cyclin K isoform 1 
MEF2D                 0.065   myocyte enhancer factor 2D 
SETD1B                0.062   SET domain containing 1B 
POU6F2                0.062   POU domain, class 6, transcription factor 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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