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Search of human proteins with 42766424
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|42766424 hypothetical protein LOC389119 [Homo sapiens]
(287 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|42766424 hypothetical protein LOC389119 [Homo sapiens] 596 e-171
gi|9506861 hypothetical protein LOC55924 isoform 1 [Homo sapiens] 80 2e-15
gi|39545575 hypothetical protein LOC55924 isoform 2 [Homo sapiens] 80 2e-15
gi|210032580 SET domain containing 1B [Homo sapiens] 41 0.001
gi|31324577 molecule interacting with Rab13 [Homo sapiens] 41 0.001
gi|239755873 PREDICTED: hypothetical protein [Homo sapiens] 36 0.034
gi|239750345 PREDICTED: hypothetical protein XP_002347375 [Homo ... 36 0.034
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 36 0.034
gi|7661690 coiled-coil domain containing 9 [Homo sapiens] 36 0.045
gi|126090909 engrailed homeobox 1 [Homo sapiens] 35 0.058
gi|38372931 brevican isoform 2 [Homo sapiens] 35 0.058
gi|38372935 brevican isoform 1 [Homo sapiens] 35 0.058
gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens] 35 0.099
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 35 0.099
gi|13540559 radial spokehead-like 1 [Homo sapiens] 35 0.099
gi|19913396 smoothelin isoform b [Homo sapiens] 35 0.099
gi|19913394 smoothelin isoform c [Homo sapiens] 35 0.099
gi|19913398 smoothelin isoform a [Homo sapiens] 35 0.099
gi|209870086 F-box protein 28 isoform b [Homo sapiens] 34 0.13
gi|7662158 F-box protein 28 isoform a [Homo sapiens] 34 0.13
gi|124244056 family with sequence similarity 123B [Homo sapiens] 34 0.17
gi|24497513 homeobox A3 isoform a [Homo sapiens] 34 0.17
gi|13562112 homeobox A3 isoform a [Homo sapiens] 34 0.17
gi|114155127 regulator of G-protein signalling 3 isoform 6 [Homo... 34 0.17
gi|10864075 regulator of G-protein signalling 3 isoform 2 [Homo ... 34 0.17
gi|62865651 regulator of G-protein signalling 3 isoform 1 [Homo ... 34 0.17
gi|91199543 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo s... 34 0.17
gi|33636768 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo s... 34 0.17
gi|61744473 melanoma antigen family A, 11 isoform b [Homo sapiens] 33 0.22
gi|65507078 melanoma antigen family A, 11 isoform a [Homo sapiens] 33 0.22
>gi|42766424 hypothetical protein LOC389119 [Homo sapiens]
Length = 287
Score = 596 bits (1536), Expect = e-171
Identities = 287/287 (100%), Positives = 287/287 (100%)
Query: 1 MDMHSARLDSFLSQLRWELLCGRDTGSPSMPGPLQPTSQTGPDVQPSHQLRASGALEEDS 60
MDMHSARLDSFLSQLRWELLCGRDTGSPSMPGPLQPTSQTGPDVQPSHQLRASGALEEDS
Sbjct: 1 MDMHSARLDSFLSQLRWELLCGRDTGSPSMPGPLQPTSQTGPDVQPSHQLRASGALEEDS 60
Query: 61 VCCVEEEEEEEEEAVVTEDRDAALGGPREHALDWDSGFSEVSGSTWREEELPVSQRPAPS 120
VCCVEEEEEEEEEAVVTEDRDAALGGPREHALDWDSGFSEVSGSTWREEELPVSQRPAPS
Sbjct: 61 VCCVEEEEEEEEEAVVTEDRDAALGGPREHALDWDSGFSEVSGSTWREEELPVSQRPAPS 120
Query: 121 AQPLRRQCLSVSGLPMPSRAPVASVPPVHHPRPKSTPDACLEHWQGLEAEDWTAALLNRG 180
AQPLRRQCLSVSGLPMPSRAPVASVPPVHHPRPKSTPDACLEHWQGLEAEDWTAALLNRG
Sbjct: 121 AQPLRRQCLSVSGLPMPSRAPVASVPPVHHPRPKSTPDACLEHWQGLEAEDWTAALLNRG 180
Query: 181 RSRQPLVLGDNCFADLVHNWMELPETGSEGGDGGGHRARARPPQFLLGLSEQLRRRLARA 240
RSRQPLVLGDNCFADLVHNWMELPETGSEGGDGGGHRARARPPQFLLGLSEQLRRRLARA
Sbjct: 181 RSRQPLVLGDNCFADLVHNWMELPETGSEGGDGGGHRARARPPQFLLGLSEQLRRRLARA 240
Query: 241 RRTAMAGKRLSCPPRPEPELPADVSRFAALMSCRSRQPIICNDVSYL 287
RRTAMAGKRLSCPPRPEPELPADVSRFAALMSCRSRQPIICNDVSYL
Sbjct: 241 RRTAMAGKRLSCPPRPEPELPADVSRFAALMSCRSRQPIICNDVSYL 287
>gi|9506861 hypothetical protein LOC55924 isoform 1 [Homo sapiens]
Length = 297
Score = 80.5 bits (197), Expect = 2e-15
Identities = 75/243 (30%), Positives = 110/243 (45%), Gaps = 43/243 (17%)
Query: 1 MDMHSARLDSFLSQLRWELLCGRDTGSPSMPGPLQPTSQTGPDVQPSHQLRASGALEEDS 60
M M S +D +L +L+ EL+ ++ G G Q + + GAL+E
Sbjct: 1 MTMESREMDCYLRRLKQELMSMKEVGD-------------GLQDQMNCMM---GALQELK 44
Query: 61 VCCVEEEEEEEEEAVVTEDRDAALGGPREHALDWDSGFSEVSGSTWREEELPVSQRP--- 117
+ V+ E+ E + GGP + + ++ W P RP
Sbjct: 45 LLQVQTALEQLE---------ISGGGPVPGSPEGPR--TQCEHPCWEGGRGPA--RPTVC 91
Query: 118 APSAQPLRRQCLSVSGLPMPSRAPVASVPPVHHPRPKSTPDACLEHWQGLEAEDWTAALL 177
+PS+QP S PS V PR + + + +E +DWT+ L+
Sbjct: 92 SPSSQPSLG-----SSTKFPSHRSVCGRDLAPLPRTQPHQSCAQQGPERVEPDDWTSTLM 146
Query: 178 NRGRSRQPLVLGDNCFADLVHNWMELP--ETGSEGGDGGGHRARARPPQFLLGLSEQLRR 235
+RGR+RQPLVLGDN FADLV NW++LP E G E G+ GG AR P+ G ++L R
Sbjct: 147 SRGRNRQPLVLGDNVFADLVGNWLDLPELEKGGEKGETGG----AREPKGEKGQPQELGR 202
Query: 236 RLA 238
R A
Sbjct: 203 RFA 205
>gi|39545575 hypothetical protein LOC55924 isoform 2 [Homo sapiens]
Length = 282
Score = 80.1 bits (196), Expect = 2e-15
Identities = 50/123 (40%), Positives = 67/123 (54%), Gaps = 11/123 (8%)
Query: 118 APSAQPLRRQCLSVSGLPMPSRAPVASVPPVHHPRPKSTPDACLEHWQGLEAEDWTAALL 177
+PS+QP S PS V PR + + + +E +DWT+ L+
Sbjct: 77 SPSSQPSLG-----SSTKFPSHRSVCGRDLAPLPRTQPHQSCAQQGPERVEPDDWTSTLM 131
Query: 178 NRGRSRQPLVLGDNCFADLVHNWMELP--ETGSEGGDGGGHRARARPPQFLLGLSEQLRR 235
+RGR+RQPLVLGDN FADLV NW++LP E G E G+ GG AR P+ G ++L R
Sbjct: 132 SRGRNRQPLVLGDNVFADLVGNWLDLPELEKGGEKGETGG----AREPKGEKGQPQELGR 187
Query: 236 RLA 238
R A
Sbjct: 188 RFA 190
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 40.8 bits (94), Expect = 0.001
Identities = 43/158 (27%), Positives = 62/158 (39%), Gaps = 28/158 (17%)
Query: 38 SQTGPDVQPSHQLRASGALEEDSVCCVEEEEEEEEEAVVTEDRDA--------------- 82
S + + S + S + +E+ V EEEEEEEEE +V E+ A
Sbjct: 1115 SSESSEFESSSESSPSSSEDEEEVVAREEEEEEEEEEMVAEESMASAGPEDFEQDGEEAA 1174
Query: 83 ---------ALGGPREHALDWDSGFSEVSGSTWREEELPVS-QRPAPSAQPLRRQCLSVS 132
+LG E ++ ++ E S E LPV + PA S +P LS
Sbjct: 1175 LAPGAPAVDSLGMEEEVDIETEAVAPEERPSMLDEPPLPVGVEEPADSREPPEEPGLSQE 1234
Query: 133 GLPMPSRAPVASVPPVHHPRPKSTPDACLEHWQGLEAE 170
G + S P A RP +P+ EH +E E
Sbjct: 1235 GAMLLSPEPPAKEV---EARPPLSPERAPEHDLEVEPE 1269
>gi|31324577 molecule interacting with Rab13 [Homo sapiens]
Length = 863
Score = 40.8 bits (94), Expect = 0.001
Identities = 45/175 (25%), Positives = 62/175 (35%), Gaps = 14/175 (8%)
Query: 31 PGPLQPTSQTGPDVQPSHQLRASG-----------ALEEDSVCCVEEEEE---EEEEAVV 76
P PL P+S GP Q S Q+ G +LE EEEEE EE A
Sbjct: 383 PAPLPPSSSPGPPSQDSRQVENGGTEEVAQPSPTASLESKPYNPFEEEEEDKEEEAPAAP 442
Query: 77 TEDRDAALGGPREHALDWDSGFSEVSGSTWREEELPVSQRPAPSAQPLRRQCLSVSGLPM 136
+ ALG P + S+ + ++ P + P+ S L LS S P
Sbjct: 443 SLATSPALGHPESTPKSLHPWYGITPTSSPKTKKRPAPRAPSASPLALHASRLSHSEPPS 502
Query: 137 PSRAPVASVPPVHHPRPKSTPDACLEHWQGLEAEDWTAALLNRGRSRQPLVLGDN 191
+ +P SV + T A L + A+ G P+ L N
Sbjct: 503 ATPSPALSVESLSSESASQTAGAELLEPPAVPKSSSEPAVHAPGTPGNPVSLSTN 557
>gi|239755873 PREDICTED: hypothetical protein [Homo sapiens]
Length = 577
Score = 36.2 bits (82), Expect = 0.034
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 12/85 (14%)
Query: 82 AALGGPREHALDWDSGFSEVSGSTWREEELPVSQRPAPSAQP------LRRQCLSVSGLP 135
A L PR+ ++ G + W +EL V P P A P L Q L +SGL
Sbjct: 47 AHLVSPRQEEVNHAVG----DHAAWEADELVVEAAPLPEAVPEAWGAGLHAQQLPISGLA 102
Query: 136 MPSRAPVASVPPVHHPRPKSTPDAC 160
+P R+ A + RP STP +C
Sbjct: 103 VPGRS--APAVALACSRPFSTPTSC 125
>gi|239750345 PREDICTED: hypothetical protein XP_002347375 [Homo
sapiens]
Length = 233
Score = 36.2 bits (82), Expect = 0.034
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 12/85 (14%)
Query: 82 AALGGPREHALDWDSGFSEVSGSTWREEELPVSQRPAPSAQP------LRRQCLSVSGLP 135
A L PR+ ++ G + W +EL V P P A P L Q L +SGL
Sbjct: 47 AHLVSPRQEEVNHAVG----DHAAWEADELVVEAAPLPEAVPEAWGAGLHAQQLPISGLA 102
Query: 136 MPSRAPVASVPPVHHPRPKSTPDAC 160
+P R+ A + RP STP +C
Sbjct: 103 VPGRS--APAVALACSRPFSTPTSC 125
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 36.2 bits (82), Expect = 0.034
Identities = 65/255 (25%), Positives = 90/255 (35%), Gaps = 39/255 (15%)
Query: 25 TGSPSMPGPLQ---PTSQTGPDVQPSHQLRASGALEEDSVCCVEEEEEEEEEAVVTEDRD 81
+G + PGP P GPD + + A + D + E +EE V
Sbjct: 1955 SGELAPPGPAPSPPPPEDLGPDFEDMEVVSGLSAADLDFAASLLGTEPFQEEIVAAGAMG 2014
Query: 82 AALGGPREHALDWDSGFSEVSGSTWREEELPVS--QRP--APSAQPLRRQCLSVSGLPMP 137
++ GGP + + E S T R PV+ P APSA P + + G+
Sbjct: 2015 SSHGGPGDSS-------EEESSPTSRYIHFPVTVVSAPGLAPSATPGAPRIEQLDGV--- 2064
Query: 138 SRAPVASVPPVHHPRPKSTPDACLEHWQGLEAEDWTAALLNRGRSRQPLVLGDNCFADLV 197
+ V PR + TP + G+ A +R R + L + D V
Sbjct: 2065 DDGTDSEAEAVQQPRGQGTPPS----GPGVVRAGVLGAAGDRARPPEDL---PSEIVDFV 2117
Query: 198 HNWMELPETGSEGGDGGGHRARARPPQFLLGLSEQLRRRL----ARARRT------AMAG 247
L G G G G R + PP L Q + L A RT A
Sbjct: 2118 -----LKNLGGPGDGGAGPREESLPPAPPLANGSQPSQGLTASPADPTRTFAWLPGAPGV 2172
Query: 248 KRLSCPPRPEPELPA 262
+ LS P PEP PA
Sbjct: 2173 RVLSLGPAPEPPKPA 2187
>gi|7661690 coiled-coil domain containing 9 [Homo sapiens]
Length = 531
Score = 35.8 bits (81), Expect = 0.045
Identities = 40/162 (24%), Positives = 62/162 (38%), Gaps = 31/162 (19%)
Query: 16 RWELLCGRDTGSPSMPGPLQP-TSQTGPDVQPSHQLRASGALEEDSVCCVEEEEEEEEEA 74
RWE G + +P P P P TS +QP ++ A + E EE+EE
Sbjct: 367 RWETKEGAASPAPETPQPTSPETSPKETPMQPP-EIPAPAHRPPEDEGEENEGEEDEEWE 425
Query: 75 VVTEDRDAALGGPREHALDWDSGFSEVSGSTWREEELPVSQRPAPSAQPLRRQCLSVSGL 134
++ED + E ++ + G +EE P AP A P +G+
Sbjct: 426 DISEDEE-------EEEIEVEEG----------DEEEPAQDHQAPEAAP--------TGI 460
Query: 135 PMPSRA---PVASVPPVHHPRPKSTPDACLEHWQGLE-AEDW 172
P +A P + P+ P+ TP + G + DW
Sbjct: 461 PCSEQAHGVPFSPEEPLLEPQAPGTPSSPFSPPSGHQPVSDW 502
>gi|126090909 engrailed homeobox 1 [Homo sapiens]
Length = 392
Score = 35.4 bits (80), Expect = 0.058
Identities = 36/117 (30%), Positives = 48/117 (41%), Gaps = 24/117 (20%)
Query: 70 EEEEAVVTEDRDAALGG-----PREHALDWDSGFSEVSGSTWREEELPVSQRPAPSAQPL 124
EE++ RD+ALG P +L G S SGS + +PVS +PAP
Sbjct: 2 EEQQPEPKSQRDSALGAAAAATPGGLSLSLSPGASGSSGSGSDGDSVPVSPQPAP----- 56
Query: 125 RRQCLSVSGLPMPSRAPVASVPPV-HHPR-PKSTPDACLEHWQGLEAEDWTAALLNR 179
P P AP +PP+ HHP P P +H + AA L+R
Sbjct: 57 ----------PSPPAAP--CLPPLAHHPHLPPHPPPPPPQHLAAPAHQPQPAAQLHR 101
>gi|38372931 brevican isoform 2 [Homo sapiens]
Length = 671
Score = 35.4 bits (80), Expect = 0.058
Identities = 35/104 (33%), Positives = 42/104 (40%), Gaps = 12/104 (11%)
Query: 55 ALEEDSVCCVEEEEEEEEEAVVTEDRDAALGGPREHALDWDSGFSEVSGSTWREEELPVS 114
ALEE+ EEE+EEEEE ED E W S S E P +
Sbjct: 452 ALEEEEKYEDEEEKEEEEEEEEVED---------EALWAWPSELSSPGPEASLPTE-PAA 501
Query: 115 QRPAPSAQPLRRQCLSVSGLPMPSRAPVASVPP-VHHPRPKSTP 157
Q + S P R L P+P AS PP VH P ++ P
Sbjct: 502 QEESLSQAP-ARAVLQPGASPLPDGESEASRPPRVHGPPTETLP 544
>gi|38372935 brevican isoform 1 [Homo sapiens]
Length = 911
Score = 35.4 bits (80), Expect = 0.058
Identities = 35/104 (33%), Positives = 42/104 (40%), Gaps = 12/104 (11%)
Query: 55 ALEEDSVCCVEEEEEEEEEAVVTEDRDAALGGPREHALDWDSGFSEVSGSTWREEELPVS 114
ALEE+ EEE+EEEEE ED E W S S E P +
Sbjct: 452 ALEEEEKYEDEEEKEEEEEEEEVED---------EALWAWPSELSSPGPEASLPTE-PAA 501
Query: 115 QRPAPSAQPLRRQCLSVSGLPMPSRAPVASVPP-VHHPRPKSTP 157
Q + S P R L P+P AS PP VH P ++ P
Sbjct: 502 QEESLSQAP-ARAVLQPGASPLPDGESEASRPPRVHGPPTETLP 544
>gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens]
Length = 1759
Score = 34.7 bits (78), Expect = 0.099
Identities = 32/124 (25%), Positives = 46/124 (37%), Gaps = 9/124 (7%)
Query: 24 DTGSPSMPGPLQPTSQTGPDVQPSHQLRASGALEEDSVCCVEEEEEEEEEAVVTEDRDAA 83
D G P P P + G + +S EE+ + EEE E++E+ ED D
Sbjct: 1645 DAGDPGPPDAAAPGPREGAAAAAAAAGESSQEDEEEELELPEEEAEDDEDEDDDEDDDDE 1704
Query: 84 LGGPREHALDWDSGFSEVSGSTWREEELPVSQRPAPSAQPLRRQCLSVSGLPMPSRAPVA 143
D D + T EE LP + A A +++ L P AP A
Sbjct: 1705 ---------DDDEDDDDEDLRTDSEESLPEAAAEAAGAGARTPALAALAALGAPGPAPTA 1755
Query: 144 SVPP 147
+ P
Sbjct: 1756 ASSP 1759
>gi|155030232 proline, glutamic acid and leucine rich protein 1 [Homo
sapiens]
Length = 1130
Score = 34.7 bits (78), Expect = 0.099
Identities = 42/168 (25%), Positives = 55/168 (32%), Gaps = 37/168 (22%)
Query: 28 PSMPGPLQPTSQT-----GPDVQPSHQLRASG--------ALEEDSVCC----------- 63
P+ PGPL P GP P QL G ALEED
Sbjct: 833 PAAPGPLPPPPPPPPPVPGPVTLPPPQLVPEGTPGGGGPPALEEDLTVININSSDEEEEE 892
Query: 64 --------VEEEEEEEEEAVVTEDRDAALGGPREHALDWDSGFSEVSGSTWREEELPVSQ 115
EEEEEEE+ ED + E +++ F E G EEE +
Sbjct: 893 EEEEEEEEEEEEEEEEDFEEEEEDEEEYFEEEEEEEEEFEEEFEEEEGELEEEEEEEDEE 952
Query: 116 RPAPSAQPLRRQCLSV-----SGLPMPSRAPVASVPPVHHPRPKSTPD 158
+ + + G P P P A PP P+ + P+
Sbjct: 953 EEEELEEVEDLEFGTAGGEVEEGAPPPPTLPPALPPPESPPKVQPEPE 1000
>gi|13540559 radial spokehead-like 1 [Homo sapiens]
Length = 717
Score = 34.7 bits (78), Expect = 0.099
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 27 SPSMPGPLQPTSQTGPDVQPS-----HQLRASGALEEDSVCCVEEEE--EEEEEAVVTED 79
+P++P P+Q +GP++ + +A A +E ++ EEEE EEEEE T+D
Sbjct: 658 NPALPAPIQQEYPSGPEIMEMSDPTVEEEQALKAAQEQALGATEEEEEGEEEEEGEETDD 717
>gi|19913396 smoothelin isoform b [Homo sapiens]
Length = 915
Score = 34.7 bits (78), Expect = 0.099
Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 9/101 (8%)
Query: 62 CCVEEEEEEEEEAVVTEDRDAALGGPREHA---LDWDSGFSEVSGSTWREEELPVSQRPA 118
C V E EE+E++A V++ G ++ L + S S P P
Sbjct: 156 CEVPEREEQEQQAEVSKPTPTPEGTSQDVTTVTLLLRAPPGSTSSSPASPSSSPTPASPE 215
Query: 119 PSAQPLRRQCLS--VSGLPMPSRAPVASVPPVHHPRPKSTP 157
P +P QCL+ V G P P +P P P P+ +P
Sbjct: 216 PPLEPAEAQCLTAEVPGSPEPPPSP----PKTTSPEPQESP 252
>gi|19913394 smoothelin isoform c [Homo sapiens]
Length = 917
Score = 34.7 bits (78), Expect = 0.099
Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 9/101 (8%)
Query: 62 CCVEEEEEEEEEAVVTEDRDAALGGPREHA---LDWDSGFSEVSGSTWREEELPVSQRPA 118
C V E EE+E++A V++ G ++ L + S S P P
Sbjct: 156 CEVPEREEQEQQAEVSKPTPTPEGTSQDVTTVTLLLRAPPGSTSSSPASPSSSPTPASPE 215
Query: 119 PSAQPLRRQCLS--VSGLPMPSRAPVASVPPVHHPRPKSTP 157
P +P QCL+ V G P P +P P P P+ +P
Sbjct: 216 PPLEPAEAQCLTAEVPGSPEPPPSP----PKTTSPEPQESP 252
>gi|19913398 smoothelin isoform a [Homo sapiens]
Length = 940
Score = 34.7 bits (78), Expect = 0.099
Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 9/101 (8%)
Query: 62 CCVEEEEEEEEEAVVTEDRDAALGGPREHA---LDWDSGFSEVSGSTWREEELPVSQRPA 118
C V E EE+E++A V++ G ++ L + S S P P
Sbjct: 156 CEVPEREEQEQQAEVSKPTPTPEGTSQDVTTVTLLLRAPPGSTSSSPASPSSSPTPASPE 215
Query: 119 PSAQPLRRQCLS--VSGLPMPSRAPVASVPPVHHPRPKSTP 157
P +P QCL+ V G P P +P P P P+ +P
Sbjct: 216 PPLEPAEAQCLTAEVPGSPEPPPSP----PKTTSPEPQESP 252
>gi|209870086 F-box protein 28 isoform b [Homo sapiens]
Length = 179
Score = 34.3 bits (77), Expect = 0.13
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 74 AVVTEDRDAALGGPREHALDWDSGFSEVSGSTWREEELPVSQRPAPSAQPLRRQCLSVSG 133
A E+R A GG + D G S SGST R+ P Q P P +Q L L+
Sbjct: 2 AAAAEERMAEEGGGGQG----DGGSSLASGSTQRQPPPPAPQHPQPGSQALPAPALAPDQ 57
Query: 134 LP 135
LP
Sbjct: 58 LP 59
>gi|7662158 F-box protein 28 isoform a [Homo sapiens]
Length = 368
Score = 34.3 bits (77), Expect = 0.13
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 74 AVVTEDRDAALGGPREHALDWDSGFSEVSGSTWREEELPVSQRPAPSAQPLRRQCLSVSG 133
A E+R A GG + D G S SGST R+ P Q P P +Q L L+
Sbjct: 2 AAAAEERMAEEGGGGQG----DGGSSLASGSTQRQPPPPAPQHPQPGSQALPAPALAPDQ 57
Query: 134 LP 135
LP
Sbjct: 58 LP 59
>gi|124244056 family with sequence similarity 123B [Homo sapiens]
Length = 1135
Score = 33.9 bits (76), Expect = 0.17
Identities = 36/114 (31%), Positives = 46/114 (40%), Gaps = 30/114 (26%)
Query: 55 ALEEDSVCCVEEEEEEEEEAVVTEDRDAALGGPREHALDWDSGFSEVSGSTWREEELPVS 114
A +EDS +EE+EEEEE + D +L A DW + W LPV
Sbjct: 923 AQQEDS----DEEDEEEEEGEWSRDSPLSLYTEPPGAYDWPA---------WAPCPLPVG 969
Query: 115 QRPA---------PSAQPLRRQC--------LSVSGLPMPSRAPVASVPPVHHP 151
PA PS+Q RQ +S+S SRAP S P + P
Sbjct: 970 PGPAWISPNQLDRPSSQSPYRQATCCIPPMTMSISLSVPESRAPGESGPQLARP 1023
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 33.9 bits (76), Expect = 0.17
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 112 PVSQRPAPSAQPLRRQCLSVSGLPMPSRAPVASVPPVHHPRPKSTPDA 159
P S P A L CL P PS+ P PP+H P P++ P A
Sbjct: 55 PSSAGGHPKAHELSEACLRTLSAP-PSQPPSLGEPPLHPPPPQAAPPA 101
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 33.9 bits (76), Expect = 0.17
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 112 PVSQRPAPSAQPLRRQCLSVSGLPMPSRAPVASVPPVHHPRPKSTPDA 159
P S P A L CL P PS+ P PP+H P P++ P A
Sbjct: 55 PSSAGGHPKAHELSEACLRTLSAP-PSQPPSLGEPPLHPPPPQAAPPA 101
>gi|114155127 regulator of G-protein signalling 3 isoform 6 [Homo
sapiens]
Length = 1198
Score = 33.9 bits (76), Expect = 0.17
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 109 EELPVSQRPAPSAQPL--RRQCLSVSGLPMPSRAPVASVPPVHHPRPKSTPDACLEHWQG 166
++ P Q PAPS +PL + S P P P VPP P P C + G
Sbjct: 726 KDSPSGQEPAPSQEPLSSKDSATSEGSPPGPDAPPSKDVPPCQEPPPAQDLSPCQDLPAG 785
Query: 167 LE 168
E
Sbjct: 786 QE 787
>gi|10864075 regulator of G-protein signalling 3 isoform 2 [Homo
sapiens]
Length = 519
Score = 33.9 bits (76), Expect = 0.17
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 109 EELPVSQRPAPSAQPL--RRQCLSVSGLPMPSRAPVASVPPVHHPRPKSTPDACLEHWQG 166
++ P Q PAPS +PL + S P P P VPP P P C + G
Sbjct: 47 KDSPSGQEPAPSQEPLSSKDSATSEGSPPGPDAPPSKDVPPCQEPPPAQDLSPCQDLPAG 106
Query: 167 LE 168
E
Sbjct: 107 QE 108
>gi|62865651 regulator of G-protein signalling 3 isoform 1 [Homo
sapiens]
Length = 917
Score = 33.9 bits (76), Expect = 0.17
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 109 EELPVSQRPAPSAQPL--RRQCLSVSGLPMPSRAPVASVPPVHHPRPKSTPDACLEHWQG 166
++ P Q PAPS +PL + S P P P VPP P P C + G
Sbjct: 445 KDSPSGQEPAPSQEPLSSKDSATSEGSPPGPDAPPSKDVPPCQEPPPAQDLSPCQDLPAG 504
Query: 167 LE 168
E
Sbjct: 505 QE 506
>gi|91199543 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo
sapiens]
Length = 1858
Score = 33.9 bits (76), Expect = 0.17
Identities = 47/206 (22%), Positives = 84/206 (40%), Gaps = 40/206 (19%)
Query: 29 SMPGPLQPTSQTGPDVQPSHQLRASGALEEDSVCCVEEEEEEEEEAVVTEDRDAALGG-- 86
SM +QP+S PD++ + Q E++V +E E E ++TE AL
Sbjct: 672 SMCSDIQPSS---PDIEVTSQQNDI----ENTVLTIEPETETALAEIITETEVPALNKCP 724
Query: 87 -----PREHAL-DWDSGFSEVSGSTWREEELPVSQRPAPSAQPLRRQCLSVSGLPMPSRA 140
++H + +W S +E +G + +S+RP ++ LP + +
Sbjct: 725 TKYPKTKKHLVNEWLSEKNEKTG----KPSDGLSERPLRITTDPEVLATQLNSLPGLTYS 780
Query: 141 PVASVPPVHHPR---------------PKSTPDACLEHWQGLEAEDWTAALLNR------ 179
P P H+ R ++ +C + W E+ +A+L+R
Sbjct: 781 PHVYSTPKHYIRFTSPFLSEKRRRKEPTENISGSCKKRWLKQALEEENSAILHRFNSPCQ 840
Query: 180 GRSRQPLVLGDNCFADLVHNWMELPE 205
RSR P V G+N L+++ LP+
Sbjct: 841 ERSRSPAVNGENKSPLLLNDSCSLPD 866
>gi|33636768 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo
sapiens]
Length = 1858
Score = 33.9 bits (76), Expect = 0.17
Identities = 47/206 (22%), Positives = 84/206 (40%), Gaps = 40/206 (19%)
Query: 29 SMPGPLQPTSQTGPDVQPSHQLRASGALEEDSVCCVEEEEEEEEEAVVTEDRDAALGG-- 86
SM +QP+S PD++ + Q E++V +E E E ++TE AL
Sbjct: 672 SMCSDIQPSS---PDIEVTSQQNDI----ENTVLTIEPETETALAEIITETEVPALNKCP 724
Query: 87 -----PREHAL-DWDSGFSEVSGSTWREEELPVSQRPAPSAQPLRRQCLSVSGLPMPSRA 140
++H + +W S +E +G + +S+RP ++ LP + +
Sbjct: 725 TKYPKTKKHLVNEWLSEKNEKTG----KPSDGLSERPLRITTDPEVLATQLNSLPGLTYS 780
Query: 141 PVASVPPVHHPR---------------PKSTPDACLEHWQGLEAEDWTAALLNR------ 179
P P H+ R ++ +C + W E+ +A+L+R
Sbjct: 781 PHVYSTPKHYIRFTSPFLSEKRRRKEPTENISGSCKKRWLKQALEEENSAILHRFNSPCQ 840
Query: 180 GRSRQPLVLGDNCFADLVHNWMELPE 205
RSR P V G+N L+++ LP+
Sbjct: 841 ERSRSPAVNGENKSPLLLNDSCSLPD 866
>gi|61744473 melanoma antigen family A, 11 isoform b [Homo sapiens]
Length = 400
Score = 33.5 bits (75), Expect = 0.22
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 36 PTSQTGPDVQPSHQLRASGALEEDSVCCVEEEEEEEEEAVVTEDRDAALGGPRE-HALDW 94
P +Q P V+P+ R LE+ S C + EE + ++ D L G + A +
Sbjct: 64 PITQIFPTVRPADLTRVIMPLEQRSQHC------KPEEGLQAQEEDLGLVGAQALQAEEQ 117
Query: 95 DSGFSEVSGSTWREEELPVSQRPAPSAQP 123
++ F + + EELP ++ P+P P
Sbjct: 118 EAAFFSSTLNVGTLEELPAAESPSPPQSP 146
>gi|65507078 melanoma antigen family A, 11 isoform a [Homo sapiens]
Length = 429
Score = 33.5 bits (75), Expect = 0.22
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 36 PTSQTGPDVQPSHQLRASGALEEDSVCCVEEEEEEEEEAVVTEDRDAALGGPRE-HALDW 94
P +Q P V+P+ R LE+ S C + EE + ++ D L G + A +
Sbjct: 93 PITQIFPTVRPADLTRVIMPLEQRSQHC------KPEEGLQAQEEDLGLVGAQALQAEEQ 146
Query: 95 DSGFSEVSGSTWREEELPVSQRPAPSAQP 123
++ F + + EELP ++ P+P P
Sbjct: 147 EAAFFSSTLNVGTLEELPAAESPSPPQSP 175
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,219,345
Number of Sequences: 37866
Number of extensions: 921216
Number of successful extensions: 9078
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 230
Number of HSP's that attempted gapping in prelim test: 8106
Number of HSP's gapped (non-prelim): 780
length of query: 287
length of database: 18,247,518
effective HSP length: 101
effective length of query: 186
effective length of database: 14,423,052
effective search space: 2682687672
effective search space used: 2682687672
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.